Wall clock time and date at job start Tue Mar 31 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34232 * 116.99425 * 2 1 4 4 O 1.20826 * 120.00427 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99534 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47131 * 299.99795 * 5 3 2 7 7 N 1.46904 * 109.47336 * 179.97438 * 5 3 2 8 8 C 1.46904 * 110.99787 * 84.99776 * 7 5 3 9 9 C 1.52999 * 109.46733 * 185.17411 * 8 7 5 10 10 C 1.50707 * 115.54837 * 297.25217 * 9 8 7 11 11 H 1.07998 * 119.99633 * 95.21800 * 10 9 8 12 12 C 1.37874 * 120.00085 * 275.21180 * 10 9 8 13 13 N 1.31515 * 119.99847 * 7.11118 * 12 10 9 14 14 Si 1.86798 * 119.99945 * 187.10105 * 12 10 9 15 15 H 1.48496 * 109.47077 * 270.00204 * 14 12 10 16 16 H 1.48498 * 109.47008 * 30.00574 * 14 12 10 17 17 H 1.48500 * 109.46965 * 150.00801 * 14 12 10 18 18 C 1.52995 * 117.49899 * 82.92507 * 9 8 7 19 19 C 1.53001 * 117.49738 * 151.58711 * 9 8 7 20 20 C 1.50704 * 109.47458 * 59.99799 * 5 3 2 21 21 C 1.38229 * 119.99621 * 79.72520 * 20 5 3 22 22 C 1.38237 * 120.00039 * 179.81172 * 21 20 5 23 23 C 1.38243 * 119.99618 * 0.39879 * 22 21 20 24 24 C 1.38233 * 119.99892 * 359.85247 * 23 22 21 25 25 C 1.38228 * 120.00199 * 359.96200 * 24 23 22 26 26 H 1.09000 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47285 * 300.00203 * 1 2 3 28 28 H 1.08997 * 109.46936 * 60.00413 * 1 2 3 29 29 H 1.00891 * 111.00013 * 208.95555 * 7 5 3 30 30 H 1.09001 * 109.47103 * 65.17721 * 8 7 5 31 31 H 1.09002 * 109.46926 * 305.16959 * 8 7 5 32 32 H 0.97001 * 119.99988 * 355.38746 * 13 12 10 33 33 H 1.09013 * 117.49732 * 214.99824 * 18 9 8 34 34 H 1.08994 * 117.50312 * 0.02562 * 18 9 8 35 35 H 1.08999 * 117.49850 * 359.97061 * 19 9 8 36 36 H 1.09002 * 117.49741 * 144.97676 * 19 9 8 37 37 H 1.08007 * 120.00271 * 359.97438 * 21 20 5 38 38 H 1.07994 * 120.00363 * 180.22803 * 22 21 20 39 39 H 1.07998 * 119.99940 * 179.83172 * 23 22 21 40 40 H 1.07998 * 119.99933 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00404 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7811 0.8909 7 7 3.9828 2.6837 -0.0002 8 6 4.0168 3.2233 1.3658 9 6 4.3279 4.7205 1.3150 10 6 5.6717 5.0859 0.7388 11 1 5.7581 5.3489 -0.3051 12 6 6.7907 5.0846 1.5443 13 7 6.7132 4.6315 2.7765 14 14 8.4166 5.7260 0.8854 15 1 9.1712 4.6110 0.2589 16 1 8.1587 6.7803 -0.1281 17 1 9.2126 6.2965 2.0017 18 6 3.1624 5.6756 1.0504 19 6 3.7836 5.5939 2.4471 20 6 4.1057 0.5916 -1.2295 21 6 4.1007 1.2507 -2.4445 22 6 4.5991 0.6253 -3.5721 23 6 5.0948 -0.6623 -3.4862 24 6 5.0950 -1.3233 -2.2722 25 6 4.6002 -0.6965 -1.1439 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.8759 2.7965 -0.4559 30 1 4.7890 2.7110 1.9397 31 1 3.0482 3.0694 1.8414 32 1 5.8559 4.3608 3.1408 33 1 3.3675 6.5685 0.4595 34 1 2.1739 5.2375 0.9129 35 1 3.2034 5.1020 3.2278 36 1 4.3974 6.4327 2.7753 37 1 3.7099 2.2552 -2.5124 38 1 4.5986 1.1415 -4.5207 39 1 5.4817 -1.1519 -4.3677 40 1 5.4819 -2.3294 -2.2051 41 1 4.6007 -1.2127 -0.1952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:21 Heat of formation + Delta-G solvation = -32.605660 kcal Electronic energy + Delta-G solvation = -23253.941141 eV Core-core repulsion = 19906.682771 eV Total energy + Delta-G solvation = -3347.258370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.45482 -39.02934 -37.26060 -36.20785 -34.73973 -31.83322 -31.14277 -30.77736 -28.28599 -26.57553 -24.86616 -23.94130 -22.41889 -22.08104 -21.08898 -20.15972 -19.34886 -17.64058 -16.95677 -16.49345 -16.25030 -16.03384 -15.12195 -15.04744 -14.39580 -14.07140 -13.78531 -13.72622 -13.47828 -13.28258 -12.88455 -12.64526 -12.62603 -12.40793 -12.04697 -11.97643 -11.44063 -11.07710 -10.92330 -10.81264 -10.69173 -10.61271 -10.31652 -10.23601 -10.11573 -9.47497 -8.85205 -8.72009 -8.47429 -8.33083 -8.26342 -7.81615 -6.32654 -4.06179 1.31208 1.47216 2.49781 2.81944 3.42279 3.47116 3.62309 3.82901 4.51017 4.56895 4.72264 4.98280 5.01926 5.08410 5.12604 5.18415 5.19524 5.35035 5.36582 5.44955 5.51465 5.56096 5.68334 5.95799 6.00353 6.11547 6.32277 6.37282 6.46555 6.51639 6.54290 6.56327 6.63882 6.68457 6.80232 7.00876 7.02796 7.26398 7.40345 7.65597 7.99562 8.08510 8.34939 8.47088 8.91788 9.69118 11.06204 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.005767 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.467150 B = 4853.973470 C = 6269.230907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.476 6.476 5 C 0.139 3.861 6 H 0.082 0.918 7 N -0.651 5.651 8 C 0.102 3.898 9 C 0.029 3.971 10 C -0.569 4.569 11 H 0.053 0.947 12 C 0.026 3.974 13 N -0.908 5.908 14 Si 1.067 2.933 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.286 1.286 18 C -0.181 4.181 19 C -0.185 4.185 20 C -0.088 4.088 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.098 4.098 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.366 0.634 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.274 0.726 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 -12.834 -8.426 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.360 6.360 5 C 0.027 3.973 6 H 0.100 0.900 7 N -0.287 5.287 8 C -0.026 4.026 9 C 0.028 3.972 10 C -0.607 4.607 11 H 0.072 0.928 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.895 3.105 15 H -0.216 1.216 16 H -0.215 1.215 17 H -0.211 1.211 18 C -0.218 4.218 19 C -0.223 4.223 20 C -0.089 4.089 21 C -0.110 4.110 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.116 4.116 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.189 0.811 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.153 0.847 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.919 -12.063 -8.156 15.719 hybrid contribution -1.136 -0.513 0.073 1.248 sum -7.055 -12.576 -8.083 16.531 Atomic orbital electron populations 1.23172 0.77082 1.03123 1.02343 1.86512 1.22786 1.34066 1.84723 1.23808 0.91747 0.81194 0.72881 1.90660 1.66251 1.36114 1.42973 1.19825 0.87612 0.92883 0.96967 0.90004 1.59993 1.37359 1.10462 1.20841 1.21619 0.97402 0.96956 0.86643 1.18941 0.93456 0.87057 0.97740 1.21315 0.91268 1.50840 0.97264 0.92834 1.25750 1.02724 0.94357 0.95136 1.70707 1.28920 1.38682 1.15978 0.83578 0.75130 0.76474 0.75278 1.21571 1.21456 1.21132 1.22756 0.97482 1.02793 0.98784 1.22776 1.04223 1.04298 0.90981 1.19530 1.00658 0.94752 0.93944 1.21199 0.97733 1.00417 0.91607 1.21157 0.99211 0.95209 0.98527 1.21170 0.99561 0.95135 0.97661 1.21056 1.00529 0.99956 0.92739 1.21024 0.97697 0.93959 0.98928 0.88506 0.92178 0.92158 0.81094 0.95171 0.93880 0.91421 0.90668 0.91068 0.91934 0.90042 0.84722 0.85950 0.86251 0.86049 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.33 10.48 -39.26 -0.41 -5.75 16 3 C 0.46 8.02 7.06 36.00 0.25 8.27 16 4 O -0.48 -9.62 15.71 -18.75 -0.29 -9.92 16 5 C 0.14 2.34 2.72 -70.01 -0.19 2.15 16 6 H 0.08 1.32 7.72 -51.93 -0.40 0.92 16 7 N -0.65 -12.97 5.20 -109.18 -0.57 -13.54 16 8 C 0.10 2.30 5.12 -3.82 -0.02 2.28 16 9 C 0.03 0.71 1.14 -155.66 -0.18 0.54 16 10 C -0.57 -15.36 8.23 -34.44 -0.28 -15.64 16 11 H 0.05 1.47 7.82 -52.49 -0.41 1.06 16 12 C 0.03 0.71 5.39 -17.82 -0.10 0.61 16 13 N -0.91 -26.32 13.57 55.43 0.75 -25.57 16 14 Si 1.07 24.67 29.91 -169.99 -5.08 19.59 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 C -0.18 -4.23 9.96 -26.69 -0.27 -4.50 16 19 C -0.18 -4.42 8.74 -26.69 -0.23 -4.66 16 20 C -0.09 -1.32 4.63 -104.62 -0.48 -1.80 16 21 C -0.09 -1.33 9.01 -39.59 -0.36 -1.69 16 22 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 25 C -0.10 -1.26 9.67 -39.59 -0.38 -1.64 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 29 H 0.37 7.54 7.48 -39.30 -0.29 7.25 16 30 H 0.03 0.72 7.83 -51.93 -0.41 0.31 16 31 H 0.04 0.96 7.56 -51.93 -0.39 0.57 16 32 H 0.27 7.93 6.20 -40.82 -0.25 7.68 16 33 H 0.07 1.75 8.14 -51.92 -0.42 1.33 16 34 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 37 H 0.13 2.11 7.73 -52.48 -0.41 1.70 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.39 8.04 -52.48 -0.42 0.97 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -31.06 350.07 -8.70 -39.76 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.01 Total: 10.18 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.36 Total: -20.02 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.18 Total: -39.11 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.71 Total: -15.66 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.06 -8.70 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.151 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds