Wall clock time and date at job start Tue Mar 31 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34232 * 116.99425 * 2 1 4 4 O 1.20826 * 120.00427 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99534 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47131 * 299.99795 * 5 3 2 7 7 N 1.46904 * 109.47336 * 179.97438 * 5 3 2 8 8 C 1.46904 * 110.99787 * 84.99776 * 7 5 3 9 9 C 1.52999 * 109.46733 * 185.17411 * 8 7 5 10 10 C 1.50707 * 115.54837 * 297.25217 * 9 8 7 11 11 H 1.07998 * 119.99633 * 95.21800 * 10 9 8 12 12 C 1.37874 * 120.00085 * 275.21180 * 10 9 8 13 13 N 1.31515 * 119.99847 * 7.11118 * 12 10 9 14 14 Si 1.86798 * 119.99945 * 187.10105 * 12 10 9 15 15 H 1.48496 * 109.47077 * 270.00204 * 14 12 10 16 16 H 1.48498 * 109.47008 * 30.00574 * 14 12 10 17 17 H 1.48500 * 109.46965 * 150.00801 * 14 12 10 18 18 C 1.52995 * 117.49899 * 82.92507 * 9 8 7 19 19 C 1.53001 * 117.49738 * 151.58711 * 9 8 7 20 20 C 1.50704 * 109.47458 * 59.99799 * 5 3 2 21 21 C 1.38229 * 119.99621 * 79.72520 * 20 5 3 22 22 C 1.38237 * 120.00039 * 179.81172 * 21 20 5 23 23 C 1.38243 * 119.99618 * 0.39879 * 22 21 20 24 24 C 1.38233 * 119.99892 * 359.85247 * 23 22 21 25 25 C 1.38228 * 120.00199 * 359.96200 * 24 23 22 26 26 H 1.09000 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47285 * 300.00203 * 1 2 3 28 28 H 1.08997 * 109.46936 * 60.00413 * 1 2 3 29 29 H 1.00891 * 111.00013 * 208.95555 * 7 5 3 30 30 H 1.09001 * 109.47103 * 65.17721 * 8 7 5 31 31 H 1.09002 * 109.46926 * 305.16959 * 8 7 5 32 32 H 0.97001 * 119.99988 * 355.38746 * 13 12 10 33 33 H 1.09013 * 117.49732 * 214.99824 * 18 9 8 34 34 H 1.08994 * 117.50312 * 0.02562 * 18 9 8 35 35 H 1.08999 * 117.49850 * 359.97061 * 19 9 8 36 36 H 1.09002 * 117.49741 * 144.97676 * 19 9 8 37 37 H 1.08007 * 120.00271 * 359.97438 * 21 20 5 38 38 H 1.07994 * 120.00363 * 180.22803 * 22 21 20 39 39 H 1.07998 * 119.99940 * 179.83172 * 23 22 21 40 40 H 1.07998 * 119.99933 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00404 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7811 0.8909 7 7 3.9828 2.6837 -0.0002 8 6 4.0168 3.2233 1.3658 9 6 4.3279 4.7205 1.3150 10 6 5.6717 5.0859 0.7388 11 1 5.7581 5.3489 -0.3051 12 6 6.7907 5.0846 1.5443 13 7 6.7132 4.6315 2.7765 14 14 8.4166 5.7260 0.8854 15 1 9.1712 4.6110 0.2589 16 1 8.1587 6.7803 -0.1281 17 1 9.2126 6.2965 2.0017 18 6 3.1624 5.6756 1.0504 19 6 3.7836 5.5939 2.4471 20 6 4.1057 0.5916 -1.2295 21 6 4.1007 1.2507 -2.4445 22 6 4.5991 0.6253 -3.5721 23 6 5.0948 -0.6623 -3.4862 24 6 5.0950 -1.3233 -2.2722 25 6 4.6002 -0.6965 -1.1439 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.8759 2.7965 -0.4559 30 1 4.7890 2.7110 1.9397 31 1 3.0482 3.0694 1.8414 32 1 5.8559 4.3608 3.1408 33 1 3.3675 6.5685 0.4595 34 1 2.1739 5.2375 0.9129 35 1 3.2034 5.1020 3.2278 36 1 4.3974 6.4327 2.7753 37 1 3.7099 2.2552 -2.5124 38 1 4.5986 1.1415 -4.5207 39 1 5.4817 -1.1519 -4.3677 40 1 5.4819 -2.3294 -2.2051 41 1 4.6007 -1.2127 -0.1952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:21 Heat of formation + Delta-G solvation = -49.574012 kcal Electronic energy + Delta-G solvation = -23254.676944 eV Core-core repulsion = 19906.682771 eV Total energy + Delta-G solvation = -3347.994173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74419 -40.09108 -39.03994 -37.58504 -36.20160 -33.92970 -32.38872 -31.77317 -29.37651 -27.91961 -26.89155 -25.51903 -23.43870 -23.18742 -23.00658 -21.48458 -21.24061 -18.89377 -18.58663 -17.89271 -17.65278 -17.14076 -16.39139 -16.33562 -15.85662 -15.66557 -15.58411 -15.10287 -14.67513 -14.38040 -14.28889 -14.25214 -14.05026 -13.83740 -13.58913 -13.06778 -12.94145 -12.72479 -12.57803 -12.23070 -12.08708 -11.94226 -11.92040 -11.81416 -11.62888 -11.38226 -10.47734 -10.38348 -10.26059 -9.81613 -9.72562 -9.45682 -8.50905 -6.24596 0.31261 0.50653 1.15691 1.55766 1.61775 1.63826 1.81189 2.59137 2.80709 3.07778 3.25965 3.49807 3.54055 3.85986 3.91818 4.10962 4.18159 4.19681 4.27522 4.27878 4.31439 4.41287 4.47686 4.62370 4.63716 4.65463 4.72941 4.76659 4.84990 5.00841 5.05986 5.16524 5.27417 5.37186 5.45618 5.53644 5.60277 5.61722 5.98073 6.09921 6.21889 6.27350 6.37914 6.75494 6.76527 7.56783 8.88380 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.005767 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.467150 B = 4853.973470 C = 6269.230907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.514 6.514 5 C 0.139 3.861 6 H 0.088 0.912 7 N -0.654 5.654 8 C 0.120 3.880 9 C 0.008 3.992 10 C -0.573 4.573 11 H 0.043 0.957 12 C -0.016 4.016 13 N -0.931 5.931 14 Si 1.110 2.890 15 H -0.274 1.274 16 H -0.277 1.277 17 H -0.288 1.288 18 C -0.167 4.167 19 C -0.182 4.182 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.127 4.127 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.105 4.105 26 H 0.137 0.863 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.359 0.641 30 H 0.011 0.989 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 -14.845 -9.918 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.401 6.401 5 C 0.027 3.973 6 H 0.105 0.895 7 N -0.288 5.288 8 C -0.009 4.009 9 C 0.007 3.993 10 C -0.611 4.611 11 H 0.061 0.939 12 C -0.216 4.216 13 N -0.567 5.567 14 Si 0.934 3.066 15 H -0.200 1.200 16 H -0.202 1.202 17 H -0.213 1.213 18 C -0.204 4.204 19 C -0.220 4.220 20 C -0.107 4.107 21 C -0.131 4.131 22 C -0.145 4.145 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.124 4.124 26 H 0.155 0.845 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.182 0.818 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.534 -14.106 -9.661 17.971 hybrid contribution -1.355 0.023 0.476 1.436 sum -6.889 -14.083 -9.185 18.170 Atomic orbital electron populations 1.23531 0.74936 1.05726 1.02206 1.86491 1.24815 1.32371 1.83982 1.23838 0.91858 0.81398 0.71839 1.90637 1.67032 1.37383 1.45012 1.19856 0.87736 0.91152 0.98544 0.89463 1.59889 1.36874 1.13047 1.19021 1.21299 0.96374 0.95386 0.87840 1.19102 0.93244 0.88572 0.98364 1.21480 0.92486 1.50323 0.96800 0.93861 1.26964 1.05908 0.93958 0.94811 1.70814 1.28423 1.40532 1.16945 0.82998 0.71946 0.76681 0.74999 1.19990 1.20211 1.21346 1.22684 0.97294 1.02243 0.98206 1.22701 1.04156 1.03679 0.91499 1.19444 1.02422 0.95841 0.92984 1.21144 0.99315 0.99933 0.92705 1.21411 0.98669 0.96013 0.98412 1.21584 0.98084 0.94401 0.98871 1.21458 0.99205 1.01162 0.92036 1.21246 0.97523 0.93198 1.00395 0.84505 0.92377 0.92333 0.81832 0.97130 0.94036 0.92510 0.90780 0.90415 0.90563 0.91750 0.86918 0.84159 0.82971 0.82904 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -10.24 10.48 -51.44 -0.54 -10.78 16 3 C 0.47 16.33 7.06 71.23 0.50 16.83 16 4 O -0.51 -21.15 15.71 21.96 0.35 -20.80 16 5 C 0.14 4.73 2.72 43.42 0.12 4.85 16 6 H 0.09 2.85 7.72 -2.39 -0.02 2.83 16 7 N -0.65 -26.83 5.20 -499.33 -2.59 -29.42 16 8 C 0.12 5.54 5.12 86.30 0.44 5.99 16 9 C 0.01 0.40 1.14 -52.93 -0.06 0.34 16 10 C -0.57 -31.41 8.23 25.60 0.21 -31.20 16 11 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 12 C -0.02 -0.90 5.39 84.65 0.46 -0.45 16 13 N -0.93 -54.73 13.57 21.45 0.29 -54.44 16 14 Si 1.11 49.60 29.91 68.60 2.05 51.65 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 18 C -0.17 -7.89 9.96 30.62 0.30 -7.59 16 19 C -0.18 -8.87 8.74 30.62 0.27 -8.60 16 20 C -0.11 -3.14 4.63 -19.87 -0.09 -3.23 16 21 C -0.11 -3.29 9.01 22.27 0.20 -3.09 16 22 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 23 C -0.11 -2.10 10.05 22.27 0.22 -1.88 16 24 C -0.12 -2.33 10.05 22.27 0.22 -2.10 16 25 C -0.11 -2.52 9.67 22.27 0.22 -2.31 16 26 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 28 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.36 15.36 7.48 -89.70 -0.67 14.69 16 30 H 0.01 0.52 7.83 -2.39 -0.02 0.50 16 31 H 0.04 1.90 7.56 -2.39 -0.02 1.88 16 32 H 0.26 15.67 6.20 -92.71 -0.57 15.09 16 33 H 0.07 3.48 8.14 -2.38 -0.02 3.46 16 34 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.06 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.11 3.70 7.73 -2.91 -0.02 3.68 16 38 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.14 2.81 8.04 -2.91 -0.02 2.79 16 Total: -1.00 -67.48 350.07 4.53 -62.95 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.54 Total: 34.15 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 4.43 Total: -33.31 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.30 Total: -83.86 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.19 Total: -31.58 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Total: -67.48 4.53 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.377 kcal (2) G-P(sol) polarization free energy of solvation -67.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds