Wall clock time and date at job start Tue Mar 31 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 108.57642 * 2 1 4 4 O 1.42101 * 108.57652 * 228.98379 * 2 1 3 5 5 C 1.81397 * 101.92465 * 114.48914 * 2 1 3 6 6 C 1.53002 * 109.47057 * 179.97438 * 5 2 1 7 7 C 1.53002 * 109.46936 * 180.02562 * 6 5 2 8 8 C 1.53002 * 109.46936 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47016 * 181.72507 * 8 7 6 10 10 C 1.46900 * 110.99732 * 76.25164 * 9 8 7 11 11 C 1.50697 * 109.46877 * 190.00135 * 10 9 8 12 12 H 1.07998 * 120.00274 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99676 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00337 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47195 * 89.99696 * 15 13 11 17 17 H 1.48497 * 109.47212 * 210.00324 * 15 13 11 18 18 H 1.48502 * 109.46718 * 329.99800 * 15 13 11 19 19 C 1.46896 * 110.99861 * 200.19952 * 9 8 7 20 20 C 1.53006 * 109.46731 * 76.57782 * 19 9 8 21 21 C 1.53001 * 117.49923 * 244.79051 * 20 19 9 22 22 C 1.53001 * 60.00107 * 252.51401 * 21 20 19 23 23 H 1.09007 * 109.46844 * 305.50549 * 1 2 3 24 24 H 1.08994 * 109.47363 * 65.50470 * 1 2 3 25 25 H 1.08993 * 109.47035 * 185.51140 * 1 2 3 26 26 H 1.09001 * 109.46706 * 60.00436 * 5 2 1 27 27 H 1.08997 * 109.47152 * 300.00086 * 5 2 1 28 28 H 1.08997 * 109.46860 * 59.99978 * 6 5 2 29 29 H 1.09001 * 109.46931 * 300.00145 * 6 5 2 30 30 H 1.09004 * 109.47265 * 60.00010 * 7 6 5 31 31 H 1.08997 * 109.46900 * 300.00092 * 7 6 5 32 32 H 1.09000 * 109.46832 * 61.72781 * 8 7 6 33 33 H 1.08997 * 109.47410 * 301.72524 * 8 7 6 34 34 H 1.09009 * 109.47183 * 309.99507 * 10 9 8 35 35 H 1.09001 * 109.47421 * 69.99889 * 10 9 8 36 36 H 0.97012 * 120.00062 * 180.02562 * 14 13 11 37 37 H 1.09006 * 109.47142 * 196.57037 * 19 9 8 38 38 H 1.08997 * 109.47495 * 316.57842 * 19 9 8 39 39 H 1.09001 * 115.55425 * 30.50360 * 20 19 9 40 40 H 1.09007 * 117.49622 * 0.02562 * 21 20 19 41 41 H 1.08993 * 117.50106 * 145.01976 * 21 20 19 42 42 H 1.08998 * 117.49722 * 252.50559 * 22 21 20 43 43 H 1.08997 * 117.49587 * 107.49199 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1888 -0.7357 1.6152 6 6 3.7056 -0.8196 1.7977 7 6 4.0217 -1.4407 3.1598 8 6 5.5384 -1.5252 3.3421 9 7 5.8420 -2.1592 4.6320 10 6 5.6361 -3.6122 4.5658 11 6 5.7160 -4.1946 5.9534 12 1 5.9016 -3.5500 6.7997 13 6 5.5521 -5.5505 6.1424 14 7 5.3255 -6.3354 5.1118 15 14 5.6518 -6.2726 7.8623 16 1 4.3001 -6.2751 8.4772 17 1 6.1635 -7.6645 7.7858 18 1 6.5712 -5.4521 8.6910 19 6 7.2086 -1.8406 5.0665 20 6 7.2502 -0.4114 5.6113 21 6 8.0935 0.6115 4.8475 22 6 8.5735 0.0818 6.2002 23 1 -0.3633 0.5969 0.8366 24 1 -0.3634 0.4261 -0.9351 25 1 -0.3633 -1.0229 0.0987 26 1 1.7612 -1.7370 1.6663 27 1 1.7611 -0.1172 2.4042 28 1 4.1336 0.1815 1.7463 29 1 4.1328 -1.4384 1.0086 30 1 3.5937 -2.4419 3.2108 31 1 3.5943 -0.8223 3.9491 32 1 5.9632 -0.5216 3.3217 33 1 5.9689 -2.1184 2.5354 34 1 4.6545 -3.8210 4.1401 35 1 6.4069 -4.0602 3.9387 36 1 5.2098 -7.2894 5.2448 37 1 7.5128 -2.5364 5.8485 38 1 7.8886 -1.9263 4.2191 39 1 6.3298 -0.0585 6.0765 40 1 8.6183 0.2664 3.9565 41 1 7.7278 1.6376 4.8097 42 1 8.5236 0.7595 7.0525 43 1 9.4143 -0.6117 6.1995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163575983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:48 Heat of formation + Delta-G solvation = -56.407298 kcal Electronic energy + Delta-G solvation = -21092.461847 eV Core-core repulsion = 17879.615312 eV Total energy + Delta-G solvation = -3212.846535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -37.96844 -37.10418 -36.23282 -36.03876 -34.40731 -32.43927 -30.01242 -29.19049 -27.39143 -25.31483 -23.17258 -22.10837 -21.44110 -20.29486 -19.62677 -18.96600 -16.71036 -16.59622 -16.38081 -16.11460 -15.35465 -15.26633 -14.75399 -14.11512 -13.92558 -13.78526 -13.54869 -13.47503 -13.19142 -12.67203 -12.43642 -12.20935 -12.11891 -11.99111 -11.73850 -11.63294 -11.32078 -11.25117 -11.18927 -11.01269 -10.91141 -10.65048 -10.57931 -10.33311 -10.22758 -10.05996 -9.56341 -9.45717 -9.13395 -8.43864 -7.24369 -6.03871 -4.04857 -0.18834 2.57841 3.30781 3.37042 3.40705 3.45670 3.82836 4.14982 4.40717 4.48535 4.51781 4.52897 4.80345 4.81589 5.14532 5.26503 5.28788 5.32016 5.34932 5.39188 5.47140 5.70883 5.80929 5.83827 5.87823 5.94029 6.04172 6.14382 6.19501 6.35355 6.36417 6.50073 6.57837 6.71251 6.84076 7.29684 7.36277 7.81303 8.10629 8.22658 8.55906 9.03621 9.59435 11.06908 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.003812 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.899838 B = 7343.737114 C = 9065.626159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.419 3.581 3 O -0.944 6.944 4 O -0.941 6.941 5 C -0.602 4.602 6 C -0.111 4.111 7 C -0.104 4.104 8 C 0.054 3.946 9 N -0.535 5.535 10 C 0.191 3.809 11 C -0.507 4.507 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.091 3.909 20 C -0.131 4.131 21 C -0.192 4.192 22 C -0.185 4.185 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.025 0.975 34 H 0.033 0.967 35 H -0.011 1.011 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.020 0.980 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 13.397 -6.595 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.602 3.398 3 O -0.941 6.941 4 O -0.938 6.938 5 C -0.732 4.732 6 C -0.150 4.150 7 C -0.143 4.143 8 C -0.075 4.075 9 N -0.259 5.259 10 C 0.066 3.934 11 C -0.546 4.546 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.037 4.037 20 C -0.149 4.149 21 C -0.229 4.229 22 C -0.222 4.222 23 H 0.146 0.854 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.007 0.993 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.038 0.962 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.259 13.687 -6.975 16.588 hybrid contribution -0.146 -1.142 0.911 1.469 sum -6.405 12.545 -6.064 15.335 Atomic orbital electron populations 1.30291 1.27460 1.11533 1.11492 1.07885 0.78036 0.75805 0.78123 1.93589 1.78925 1.34772 1.86800 1.93602 1.78839 1.66930 1.54472 1.30291 1.07012 1.13991 1.21920 1.21335 0.89741 1.02837 1.01051 1.21498 0.96941 1.01719 0.94134 1.22050 0.95125 0.98673 0.91683 1.61995 1.23598 1.14322 1.25972 1.19772 0.96312 0.80145 0.97162 1.21189 1.48223 0.92028 0.93147 0.91808 1.24982 0.95493 0.97139 0.96951 1.69962 1.49514 1.04643 1.29722 0.86529 0.78302 0.78227 0.84539 1.20683 1.21366 1.19839 1.21572 0.89799 0.93457 0.98906 1.22455 0.94653 0.95504 1.02321 1.23017 1.05360 0.99051 0.95437 1.22891 0.98980 1.03898 0.96456 0.85440 0.85551 0.85342 0.84780 0.84955 0.90507 0.90415 0.90938 0.91215 0.91934 0.95680 0.94907 0.99299 0.92959 0.89198 0.96154 0.87419 0.89414 0.89523 0.89344 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.30 10.62 101.05 1.07 -2.23 16 2 S 2.42 21.08 5.36 -107.50 -0.58 20.50 16 3 O -0.94 -11.62 18.10 -57.83 -1.05 -12.67 16 4 O -0.94 -12.15 18.10 -57.83 -1.05 -13.20 16 5 C -0.60 -5.14 5.81 37.16 0.22 -4.93 16 6 C -0.11 -1.34 5.22 -26.73 -0.14 -1.48 16 7 C -0.10 -1.58 5.35 -26.73 -0.14 -1.72 16 8 C 0.05 0.93 4.81 -3.82 -0.02 0.91 16 9 N -0.53 -11.12 4.35 -236.07 -1.03 -12.14 16 10 C 0.19 4.84 4.54 -4.98 -0.02 4.82 16 11 C -0.51 -13.92 8.22 -34.44 -0.28 -14.21 16 12 H 0.06 1.74 7.32 -52.49 -0.38 1.36 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 15 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.09 1.74 5.06 -3.82 -0.02 1.72 16 20 C -0.13 -2.07 5.22 -90.61 -0.47 -2.55 16 21 C -0.19 -2.56 10.04 -26.73 -0.27 -2.83 16 22 C -0.18 -2.51 10.25 -26.73 -0.27 -2.79 16 23 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 24 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.13 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.23 6.77 -51.93 -0.35 0.88 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.99 7.21 -51.93 -0.37 0.61 16 33 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 34 H 0.03 0.88 6.64 -51.92 -0.34 0.53 16 35 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 36 H 0.26 7.24 8.31 -40.81 -0.34 6.90 16 37 H 0.09 1.93 6.58 -51.93 -0.34 1.59 16 38 H 0.02 0.38 7.72 -51.93 -0.40 -0.02 16 39 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -35.07 363.05 -10.62 -45.68 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.66 Total: -0.58 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -0.45 Total: -23.81 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.29 Total: -37.73 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -2.09 Total: -25.86 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 21.08 SS G_CDS: -0.58 Total: 20.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.07 -10.62 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163575983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.722 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds