Wall clock time and date at job start Tue Mar 31 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 108.57642 * 2 1 4 4 O 1.42101 * 108.57652 * 228.98379 * 2 1 3 5 5 C 1.81397 * 101.92465 * 114.48914 * 2 1 3 6 6 C 1.53002 * 109.47057 * 179.97438 * 5 2 1 7 7 C 1.53002 * 109.46936 * 180.02562 * 6 5 2 8 8 C 1.53002 * 109.46936 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47016 * 181.72507 * 8 7 6 10 10 C 1.46900 * 110.99732 * 76.25164 * 9 8 7 11 11 C 1.50697 * 109.46877 * 190.00135 * 10 9 8 12 12 H 1.07998 * 120.00274 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99676 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00337 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47195 * 89.99696 * 15 13 11 17 17 H 1.48497 * 109.47212 * 210.00324 * 15 13 11 18 18 H 1.48502 * 109.46718 * 329.99800 * 15 13 11 19 19 C 1.46896 * 110.99861 * 200.19952 * 9 8 7 20 20 C 1.53006 * 109.46731 * 76.57782 * 19 9 8 21 21 C 1.53001 * 117.49923 * 244.79051 * 20 19 9 22 22 C 1.53001 * 60.00107 * 252.51401 * 21 20 19 23 23 H 1.09007 * 109.46844 * 305.50549 * 1 2 3 24 24 H 1.08994 * 109.47363 * 65.50470 * 1 2 3 25 25 H 1.08993 * 109.47035 * 185.51140 * 1 2 3 26 26 H 1.09001 * 109.46706 * 60.00436 * 5 2 1 27 27 H 1.08997 * 109.47152 * 300.00086 * 5 2 1 28 28 H 1.08997 * 109.46860 * 59.99978 * 6 5 2 29 29 H 1.09001 * 109.46931 * 300.00145 * 6 5 2 30 30 H 1.09004 * 109.47265 * 60.00010 * 7 6 5 31 31 H 1.08997 * 109.46900 * 300.00092 * 7 6 5 32 32 H 1.09000 * 109.46832 * 61.72781 * 8 7 6 33 33 H 1.08997 * 109.47410 * 301.72524 * 8 7 6 34 34 H 1.09009 * 109.47183 * 309.99507 * 10 9 8 35 35 H 1.09001 * 109.47421 * 69.99889 * 10 9 8 36 36 H 0.97012 * 120.00062 * 180.02562 * 14 13 11 37 37 H 1.09006 * 109.47142 * 196.57037 * 19 9 8 38 38 H 1.08997 * 109.47495 * 316.57842 * 19 9 8 39 39 H 1.09001 * 115.55425 * 30.50360 * 20 19 9 40 40 H 1.09007 * 117.49622 * 0.02562 * 21 20 19 41 41 H 1.08993 * 117.50106 * 145.01976 * 21 20 19 42 42 H 1.08998 * 117.49722 * 252.50559 * 22 21 20 43 43 H 1.08997 * 117.49587 * 107.49199 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1888 -0.7357 1.6152 6 6 3.7056 -0.8196 1.7977 7 6 4.0217 -1.4407 3.1598 8 6 5.5384 -1.5252 3.3421 9 7 5.8420 -2.1592 4.6320 10 6 5.6361 -3.6122 4.5658 11 6 5.7160 -4.1946 5.9534 12 1 5.9016 -3.5500 6.7997 13 6 5.5521 -5.5505 6.1424 14 7 5.3255 -6.3354 5.1118 15 14 5.6518 -6.2726 7.8623 16 1 4.3001 -6.2751 8.4772 17 1 6.1635 -7.6645 7.7858 18 1 6.5712 -5.4521 8.6910 19 6 7.2086 -1.8406 5.0665 20 6 7.2502 -0.4114 5.6113 21 6 8.0935 0.6115 4.8475 22 6 8.5735 0.0818 6.2002 23 1 -0.3633 0.5969 0.8366 24 1 -0.3634 0.4261 -0.9351 25 1 -0.3633 -1.0229 0.0987 26 1 1.7612 -1.7370 1.6663 27 1 1.7611 -0.1172 2.4042 28 1 4.1336 0.1815 1.7463 29 1 4.1328 -1.4384 1.0086 30 1 3.5937 -2.4419 3.2108 31 1 3.5943 -0.8223 3.9491 32 1 5.9632 -0.5216 3.3217 33 1 5.9689 -2.1184 2.5354 34 1 4.6545 -3.8210 4.1401 35 1 6.4069 -4.0602 3.9387 36 1 5.2098 -7.2894 5.2448 37 1 7.5128 -2.5364 5.8485 38 1 7.8886 -1.9263 4.2191 39 1 6.3298 -0.0585 6.0765 40 1 8.6183 0.2664 3.9565 41 1 7.7278 1.6376 4.8097 42 1 8.5236 0.7595 7.0525 43 1 9.4143 -0.6117 6.1995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163575983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:48 Heat of formation + Delta-G solvation = -81.582300 kcal Electronic energy + Delta-G solvation = -21093.553517 eV Core-core repulsion = 17879.615312 eV Total energy + Delta-G solvation = -3213.938205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.42797 -37.93389 -37.37566 -36.98097 -35.74450 -34.42186 -30.78828 -30.15309 -29.26401 -26.80664 -24.80245 -23.17862 -22.78208 -21.69326 -21.07445 -19.70730 -18.59999 -17.46104 -17.23422 -16.94530 -16.83300 -16.63428 -16.16757 -15.57095 -15.43990 -15.15836 -14.50461 -14.07391 -14.04388 -13.86901 -13.70040 -13.60210 -13.37435 -13.07813 -13.01568 -12.97418 -12.81227 -12.53248 -12.39175 -12.31122 -12.26720 -12.13035 -11.91680 -11.82196 -11.47724 -11.32393 -11.17515 -10.97965 -10.67759 -10.55058 -9.00542 -8.19460 -6.28831 -0.85511 1.41384 1.42283 1.53558 1.95492 2.40803 2.77255 2.96795 3.12658 3.19257 3.27020 3.70794 3.87751 3.98577 4.12636 4.14805 4.16366 4.19787 4.30854 4.37156 4.48836 4.51473 4.68160 4.77031 4.80050 4.81949 4.89886 4.93079 5.01103 5.04474 5.08162 5.18319 5.29912 5.31564 5.34672 5.39188 5.47037 5.67718 6.09048 6.39137 6.68213 6.88092 7.40753 8.91641 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.003812 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.899838 B = 7343.737114 C = 9065.626159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.427 3.573 3 O -0.985 6.985 4 O -0.993 6.993 5 C -0.602 4.602 6 C -0.115 4.115 7 C -0.097 4.097 8 C 0.051 3.949 9 N -0.536 5.536 10 C 0.207 3.793 11 C -0.521 4.521 12 H 0.062 0.938 13 C 0.003 3.997 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.094 3.906 20 C -0.151 4.151 21 C -0.173 4.173 22 C -0.174 4.174 23 H 0.155 0.845 24 H 0.137 0.863 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.161 0.839 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.010 0.990 34 H 0.013 0.987 35 H -0.047 1.047 36 H 0.264 0.736 37 H 0.059 0.941 38 H 0.017 0.983 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 15.118 -5.400 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.615 3.385 3 O -0.982 6.982 4 O -0.990 6.990 5 C -0.731 4.731 6 C -0.154 4.154 7 C -0.136 4.136 8 C -0.077 4.077 9 N -0.260 5.260 10 C 0.081 3.919 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.195 4.195 14 N -0.576 5.576 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.034 4.034 20 C -0.169 4.169 21 C -0.210 4.210 22 C -0.211 4.211 23 H 0.173 0.827 24 H 0.156 0.844 25 H 0.168 0.832 26 H 0.166 0.834 27 H 0.179 0.821 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.029 0.971 34 H 0.031 0.969 35 H -0.029 1.029 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.450 15.433 -5.784 18.087 hybrid contribution 0.208 -1.654 0.514 1.744 sum -7.241 13.779 -5.271 16.434 Atomic orbital electron populations 1.30067 1.21562 1.13763 1.13434 1.07321 0.79997 0.74074 0.77138 1.93533 1.81145 1.36384 1.87151 1.93538 1.81245 1.67793 1.56420 1.30264 1.04471 1.15568 1.22828 1.21300 0.92760 1.02768 0.98611 1.21412 0.94969 1.00804 0.96447 1.22197 0.97052 0.98994 0.89500 1.61998 1.24772 1.11339 1.27897 1.19417 0.93928 0.82989 0.95605 1.21467 1.48101 0.92530 0.93802 0.91977 1.25875 0.94905 0.97528 1.01177 1.70092 1.50380 1.05006 1.32076 0.85428 0.78715 0.77351 0.79412 1.19704 1.20932 1.18963 1.21509 0.88718 0.95310 0.97862 1.22195 0.95968 0.93881 1.04892 1.23089 1.03422 0.99150 0.95320 1.22999 0.97047 1.03616 0.97466 0.82688 0.84420 0.83233 0.83434 0.82064 0.89532 0.91542 0.93398 0.90292 0.89702 0.97128 0.96899 1.02892 0.92755 0.92227 0.96461 0.87784 0.89338 0.87332 0.87303 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.09 10.62 113.37 1.20 -2.89 16 2 S 2.43 39.81 5.36 -56.49 -0.30 39.51 16 3 O -0.98 -23.65 18.10 -127.37 -2.31 -25.95 16 4 O -0.99 -26.00 18.10 -127.37 -2.31 -28.31 16 5 C -0.60 -9.37 5.81 71.98 0.42 -8.95 16 6 C -0.12 -2.78 5.22 30.60 0.16 -2.62 16 7 C -0.10 -2.99 5.35 30.60 0.16 -2.83 16 8 C 0.05 1.82 4.81 86.30 0.41 2.23 16 9 N -0.54 -23.07 4.35 -900.78 -3.92 -26.99 16 10 C 0.21 11.05 4.54 85.56 0.39 11.44 16 11 C -0.52 -29.47 8.22 25.60 0.21 -29.26 16 12 H 0.06 3.46 7.32 -2.91 -0.02 3.44 16 13 C 0.00 0.17 5.46 84.66 0.46 0.64 16 14 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 15 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 C 0.09 3.71 5.06 86.31 0.44 4.15 16 20 C -0.15 -4.64 5.22 -10.79 -0.06 -4.70 16 21 C -0.17 -4.21 10.04 30.59 0.31 -3.91 16 22 C -0.17 -4.37 10.25 30.60 0.31 -4.05 16 23 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 24 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.70 6.77 -2.39 -0.02 1.68 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 2.64 7.21 -2.39 -0.02 2.62 16 33 H 0.01 0.40 7.99 -2.39 -0.02 0.38 16 34 H 0.01 0.73 6.64 -2.38 -0.02 0.72 16 35 H -0.05 -2.76 8.12 -2.39 -0.02 -2.78 16 36 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 37 H 0.06 2.67 6.58 -2.38 -0.02 2.65 16 38 H 0.02 0.67 7.72 -2.39 -0.02 0.65 16 39 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.09 2.16 8.04 -2.38 -0.02 2.15 16 41 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -79.02 363.05 -1.14 -80.16 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.95 Total: 12.14 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 4.42 Total: -40.74 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -3.63 Total: -82.98 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -4.61 Total: -54.26 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 39.81 SS G_CDS: -0.30 Total: 39.51 kcal Total: -79.02 -1.14 -80.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163575983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.419 kcal (2) G-P(sol) polarization free energy of solvation -79.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds