Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00204 * 2 1 4 4 O 1.20825 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00277 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.62607 * 59.61459 * 5 3 2 7 7 C 1.52891 * 109.79288 * 299.12794 * 5 3 2 8 8 C 1.50713 * 109.97038 * 189.84773 * 7 5 3 9 9 C 1.38678 * 118.49059 * 196.84631 * 8 7 5 10 10 C 1.38038 * 120.34881 * 180.20248 * 9 8 7 11 11 C 1.38261 * 119.82691 * 0.02562 * 10 9 8 12 12 C 1.38014 * 119.86746 * 359.91730 * 11 10 9 13 13 C 1.37831 * 121.65912 * 16.89911 * 8 7 5 14 14 C 1.50615 * 121.85147 * 359.46328 * 13 8 7 15 15 N 1.46633 * 110.47856 * 17.65495 * 14 13 8 16 16 C 1.46906 * 111.00123 * 70.82452 * 15 14 13 17 17 C 1.53005 * 109.47004 * 53.34684 * 16 15 14 18 18 C 1.50701 * 109.46847 * 174.43584 * 17 16 15 19 19 H 1.08005 * 120.00018 * 359.97438 * 18 17 16 20 20 C 1.37870 * 119.99852 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99924 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00067 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47026 * 90.00452 * 22 20 18 24 24 H 1.48504 * 109.47226 * 209.99849 * 22 20 18 25 25 H 1.48495 * 109.47278 * 330.00113 * 22 20 18 26 26 H 1.09005 * 109.47060 * 299.99680 * 1 2 3 27 27 H 1.08995 * 109.47486 * 59.99654 * 1 2 3 28 28 H 1.09000 * 109.47381 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.38583 * 310.00724 * 7 5 3 30 30 H 1.09005 * 109.38753 * 69.69211 * 7 5 3 31 31 H 1.08000 * 119.82765 * 0.17509 * 9 8 7 32 32 H 1.08000 * 120.08075 * 180.02562 * 10 9 8 33 33 H 1.08002 * 120.06046 * 179.97438 * 11 10 9 34 34 H 1.08004 * 119.81120 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.30375 * 257.34373 * 14 13 8 36 36 H 1.09003 * 109.30234 * 137.96549 * 14 13 8 37 37 H 1.08999 * 109.46669 * 293.35225 * 16 15 14 38 38 H 1.08993 * 109.47407 * 173.34880 * 16 15 14 39 39 H 1.08999 * 109.46757 * 294.43144 * 17 16 15 40 40 H 1.08994 * 109.47198 * 54.43387 * 17 16 15 41 41 H 0.97007 * 120.00075 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9595 0.7752 -0.8848 7 6 4.1195 0.6029 1.2576 8 6 5.5941 0.8864 1.3863 9 6 6.3479 0.0949 2.2398 10 6 7.7009 0.3235 2.3901 11 6 8.3077 1.3473 1.6863 12 6 7.5586 2.1348 0.8357 13 6 6.1992 1.9048 0.6817 14 6 5.4261 2.7847 -0.2653 15 7 3.9875 2.6848 0.0005 16 6 3.6399 3.3382 1.2695 17 6 4.1732 4.7723 1.2676 18 6 3.7008 5.4855 2.5082 19 1 3.0817 4.9679 3.2260 20 6 4.0580 6.7992 2.7264 21 7 3.6452 7.4218 3.8088 22 14 5.1281 7.6947 1.4845 23 1 4.2649 8.3571 0.4738 24 1 5.9467 8.7180 2.1832 25 1 6.0233 6.7212 0.8093 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5987 0.9897 2.1336 30 1 3.9624 -0.4737 1.1913 31 1 5.8738 -0.7042 2.7903 32 1 8.2839 -0.2958 3.0557 33 1 9.3660 1.5297 1.8013 34 1 8.0335 2.9345 0.2867 35 1 5.6256 2.4732 -1.2906 36 1 5.7452 3.8191 -0.1377 37 1 4.0860 2.7858 2.0965 38 1 2.5563 3.3537 1.3853 39 1 5.2630 4.7546 1.2514 40 1 3.8052 5.2956 0.3852 41 1 3.8968 8.3459 3.9625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176841667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = -46.249303 kcal Electronic energy + Delta-G solvation = -23608.319854 eV Core-core repulsion = 20260.469852 eV Total energy + Delta-G solvation = -3347.850002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98990 -39.72560 -37.35525 -36.06877 -33.54020 -32.57642 -31.29297 -30.42660 -29.10700 -27.65103 -25.71135 -24.55279 -23.28274 -22.11767 -21.16401 -20.63725 -18.75339 -17.47553 -17.07717 -16.54255 -16.26624 -16.09398 -15.33888 -15.07901 -14.84781 -14.43990 -14.06632 -13.90757 -13.60880 -13.24046 -12.99055 -12.77100 -12.68581 -12.53971 -12.23905 -12.02719 -11.54084 -11.42792 -11.34595 -11.23488 -10.96148 -10.88359 -10.69109 -10.14304 -10.07737 -9.76073 -9.62341 -9.11341 -8.66825 -8.50371 -8.44039 -8.00538 -5.99697 -3.96979 1.43548 1.47145 2.36354 2.65725 3.34981 3.41262 3.43880 3.82440 4.19292 4.49316 4.62091 4.80071 4.90316 4.98592 5.05317 5.09063 5.11995 5.13171 5.18532 5.34510 5.45259 5.49578 5.55463 5.61421 5.71938 5.77014 5.92656 6.08506 6.15271 6.28975 6.29527 6.41265 6.52010 6.58627 6.67788 6.84607 7.06012 7.09124 7.23726 7.46896 7.58963 7.86322 7.95712 8.58357 9.04549 9.62509 11.13942 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.006944 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.091036 B = 4031.327743 C = 5880.219468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.472 6.472 5 C 0.095 3.905 6 H 0.116 0.884 7 C -0.106 4.106 8 C -0.075 4.075 9 C -0.115 4.115 10 C -0.124 4.124 11 C -0.121 4.121 12 C -0.110 4.110 13 C -0.100 4.100 14 C 0.084 3.916 15 N -0.511 5.511 16 C 0.057 3.943 17 C -0.007 4.007 18 C -0.515 4.515 19 H 0.070 0.930 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.033 0.967 38 H 0.084 0.916 39 H 0.015 0.985 40 H 0.022 0.978 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -18.511 -8.090 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.302 3.698 4 O -0.355 6.355 5 C -0.015 4.015 6 H 0.134 0.866 7 C -0.145 4.145 8 C -0.075 4.075 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.139 4.139 12 C -0.129 4.129 13 C -0.102 4.102 14 C -0.043 4.043 15 N -0.233 5.233 16 C -0.069 4.069 17 C -0.044 4.044 18 C -0.554 4.554 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.544 5.544 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.398 -17.758 -8.387 19.931 hybrid contribution 0.784 0.259 0.250 0.863 sum 4.183 -17.500 -8.136 19.747 Atomic orbital electron populations 1.23221 0.76560 1.03284 1.02711 1.86471 1.23224 1.33773 1.84756 1.23500 0.91528 0.81417 0.73319 1.90721 1.66404 1.35884 1.42520 1.21213 0.87623 0.92547 1.00124 0.86588 1.20997 0.92803 1.01803 0.98893 1.19348 0.94612 0.95853 0.97675 1.20994 0.94105 0.99687 0.98550 1.21016 0.94817 0.98421 0.99950 1.21059 0.99751 0.95931 0.97181 1.21072 0.93390 0.99437 0.98973 1.20436 0.94803 0.96289 0.98680 1.21335 0.85609 1.00444 0.96938 1.62558 1.13904 1.09584 1.37300 1.22432 1.01886 0.96308 0.86315 1.19611 0.95654 0.91298 0.97879 1.21023 1.32220 0.96896 1.05213 0.91208 1.24978 0.95773 0.97335 0.95266 1.69918 1.46114 1.11760 1.26568 0.86764 0.81072 0.79611 0.81730 1.20201 1.21512 1.19086 0.91847 0.91961 0.88369 0.89344 0.89216 0.86246 0.86292 0.86252 0.85979 0.89659 0.87544 0.94863 0.89750 0.96672 0.95989 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.70 10.51 -39.25 -0.41 -5.11 16 3 C 0.46 7.21 7.01 36.01 0.25 7.46 16 4 O -0.47 -9.13 14.22 -18.75 -0.27 -9.40 16 5 C 0.10 1.38 2.70 -68.78 -0.19 1.20 16 6 H 0.12 1.41 8.05 -51.93 -0.42 0.99 16 7 C -0.11 -1.43 4.41 -27.93 -0.12 -1.55 16 8 C -0.07 -1.06 5.08 -104.60 -0.53 -1.60 16 9 C -0.12 -1.47 9.66 -39.49 -0.38 -1.85 16 10 C -0.12 -1.49 10.05 -39.65 -0.40 -1.89 16 11 C -0.12 -1.51 10.05 -39.65 -0.40 -1.91 16 12 C -0.11 -1.52 9.65 -39.48 -0.38 -1.90 16 13 C -0.10 -1.51 5.35 -104.63 -0.56 -2.07 16 14 C 0.08 1.32 5.26 -5.16 -0.03 1.29 16 15 N -0.51 -9.04 4.58 -229.61 -1.05 -10.09 16 16 C 0.06 1.21 3.96 -3.82 -0.02 1.20 16 17 C -0.01 -0.17 3.41 -27.88 -0.10 -0.27 16 18 C -0.51 -15.21 9.66 -34.44 -0.33 -15.55 16 19 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 20 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 21 N -0.90 -28.57 13.96 55.43 0.77 -27.80 16 22 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 26 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.33 6.74 -51.93 -0.35 0.98 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.11 1.84 5.71 -51.93 -0.30 1.55 16 37 H 0.03 0.71 5.42 -51.93 -0.28 0.43 16 38 H 0.08 1.98 6.12 -51.93 -0.32 1.66 16 39 H 0.02 0.37 5.50 -51.93 -0.29 0.09 16 40 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -34.21 328.09 -8.62 -42.83 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.73 Total: 1.08 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -2.21 Total: -14.08 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.28 Total: -37.88 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.68 Total: -14.51 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.21 -8.62 -42.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176841667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.420 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds