Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00204 * 2 1 4 4 O 1.20825 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00277 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.62607 * 59.61459 * 5 3 2 7 7 C 1.52891 * 109.79288 * 299.12794 * 5 3 2 8 8 C 1.50713 * 109.97038 * 189.84773 * 7 5 3 9 9 C 1.38678 * 118.49059 * 196.84631 * 8 7 5 10 10 C 1.38038 * 120.34881 * 180.20248 * 9 8 7 11 11 C 1.38261 * 119.82691 * 0.02562 * 10 9 8 12 12 C 1.38014 * 119.86746 * 359.91730 * 11 10 9 13 13 C 1.37831 * 121.65912 * 16.89911 * 8 7 5 14 14 C 1.50615 * 121.85147 * 359.46328 * 13 8 7 15 15 N 1.46633 * 110.47856 * 17.65495 * 14 13 8 16 16 C 1.46906 * 111.00123 * 70.82452 * 15 14 13 17 17 C 1.53005 * 109.47004 * 53.34684 * 16 15 14 18 18 C 1.50701 * 109.46847 * 174.43584 * 17 16 15 19 19 H 1.08005 * 120.00018 * 359.97438 * 18 17 16 20 20 C 1.37870 * 119.99852 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99924 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00067 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47026 * 90.00452 * 22 20 18 24 24 H 1.48504 * 109.47226 * 209.99849 * 22 20 18 25 25 H 1.48495 * 109.47278 * 330.00113 * 22 20 18 26 26 H 1.09005 * 109.47060 * 299.99680 * 1 2 3 27 27 H 1.08995 * 109.47486 * 59.99654 * 1 2 3 28 28 H 1.09000 * 109.47381 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.38583 * 310.00724 * 7 5 3 30 30 H 1.09005 * 109.38753 * 69.69211 * 7 5 3 31 31 H 1.08000 * 119.82765 * 0.17509 * 9 8 7 32 32 H 1.08000 * 120.08075 * 180.02562 * 10 9 8 33 33 H 1.08002 * 120.06046 * 179.97438 * 11 10 9 34 34 H 1.08004 * 119.81120 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.30375 * 257.34373 * 14 13 8 36 36 H 1.09003 * 109.30234 * 137.96549 * 14 13 8 37 37 H 1.08999 * 109.46669 * 293.35225 * 16 15 14 38 38 H 1.08993 * 109.47407 * 173.34880 * 16 15 14 39 39 H 1.08999 * 109.46757 * 294.43144 * 17 16 15 40 40 H 1.08994 * 109.47198 * 54.43387 * 17 16 15 41 41 H 0.97007 * 120.00075 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9595 0.7752 -0.8848 7 6 4.1195 0.6029 1.2576 8 6 5.5941 0.8864 1.3863 9 6 6.3479 0.0949 2.2398 10 6 7.7009 0.3235 2.3901 11 6 8.3077 1.3473 1.6863 12 6 7.5586 2.1348 0.8357 13 6 6.1992 1.9048 0.6817 14 6 5.4261 2.7847 -0.2653 15 7 3.9875 2.6848 0.0005 16 6 3.6399 3.3382 1.2695 17 6 4.1732 4.7723 1.2676 18 6 3.7008 5.4855 2.5082 19 1 3.0817 4.9679 3.2260 20 6 4.0580 6.7992 2.7264 21 7 3.6452 7.4218 3.8088 22 14 5.1281 7.6947 1.4845 23 1 4.2649 8.3571 0.4738 24 1 5.9467 8.7180 2.1832 25 1 6.0233 6.7212 0.8093 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5987 0.9897 2.1336 30 1 3.9624 -0.4737 1.1913 31 1 5.8738 -0.7042 2.7903 32 1 8.2839 -0.2958 3.0557 33 1 9.3660 1.5297 1.8013 34 1 8.0335 2.9345 0.2867 35 1 5.6256 2.4732 -1.2906 36 1 5.7452 3.8191 -0.1377 37 1 4.0860 2.7858 2.0965 38 1 2.5563 3.3537 1.3853 39 1 5.2630 4.7546 1.2514 40 1 3.8052 5.2956 0.3852 41 1 3.8968 8.3459 3.9625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176841667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = -68.381779 kcal Electronic energy + Delta-G solvation = -23609.279590 eV Core-core repulsion = 20260.469852 eV Total energy + Delta-G solvation = -3348.809739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18321 -40.83905 -38.50973 -37.29817 -35.42578 -34.03577 -32.76490 -31.73100 -30.44981 -28.58607 -27.37757 -25.66009 -24.82971 -23.14174 -22.54272 -22.05755 -20.06454 -19.12365 -18.59732 -17.85553 -17.43261 -17.17054 -16.58609 -16.53022 -15.99906 -15.80826 -15.63337 -15.31907 -14.76798 -14.62890 -14.34229 -14.13566 -14.00256 -13.78275 -13.45288 -13.33940 -12.99921 -12.81280 -12.68016 -12.50983 -12.33994 -11.97532 -11.87863 -11.81894 -11.75749 -11.61171 -11.53008 -11.07210 -10.77656 -9.64898 -9.48381 -9.37539 -8.31756 -6.36107 0.43955 0.49159 1.14987 1.33546 1.36110 1.47595 1.58604 2.34507 2.83094 2.88929 3.03484 3.57039 3.71686 3.81306 3.92687 4.03883 4.11643 4.24279 4.29367 4.33557 4.33807 4.37519 4.53789 4.60936 4.63050 4.70083 4.71012 4.77288 4.87444 4.91636 5.13907 5.15023 5.22655 5.33748 5.39877 5.56276 5.59204 5.63720 5.68244 5.92448 6.02674 6.13795 6.25971 6.69824 6.77383 7.27714 8.85416 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.006944 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.091036 B = 4031.327743 C = 5880.219468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.519 6.519 5 C 0.095 3.905 6 H 0.149 0.851 7 C -0.098 4.098 8 C -0.092 4.092 9 C -0.122 4.122 10 C -0.126 4.126 11 C -0.125 4.125 12 C -0.125 4.125 13 C -0.122 4.122 14 C 0.086 3.914 15 N -0.522 5.522 16 C 0.078 3.922 17 C 0.003 3.997 18 C -0.532 4.532 19 H 0.024 0.976 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.952 3.048 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.242 1.242 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.139 0.861 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.027 0.973 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.017 0.983 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -20.361 -9.682 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.308 3.692 4 O -0.406 6.406 5 C -0.014 4.014 6 H 0.166 0.834 7 C -0.136 4.136 8 C -0.092 4.092 9 C -0.140 4.140 10 C -0.143 4.143 11 C -0.143 4.143 12 C -0.143 4.143 13 C -0.123 4.123 14 C -0.041 4.041 15 N -0.244 5.244 16 C -0.049 4.049 17 C -0.034 4.034 18 C -0.570 4.570 19 H 0.043 0.957 20 C -0.190 4.190 21 N -0.591 5.591 22 Si 0.775 3.225 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.165 1.165 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.157 0.843 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.035 0.965 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.478 -19.660 -9.988 22.722 hybrid contribution 0.063 0.719 0.825 1.096 sum 5.541 -18.941 -9.163 21.759 Atomic orbital electron populations 1.23540 0.74901 1.05792 1.02206 1.86462 1.24785 1.32059 1.83963 1.23788 0.92037 0.81447 0.71962 1.90711 1.67433 1.37526 1.44930 1.21375 0.87042 0.90895 1.02129 0.83375 1.20932 0.92320 1.03319 0.97076 1.19506 0.94873 0.96386 0.98423 1.21300 0.94594 0.99928 0.98158 1.21410 0.94821 0.98350 0.99751 1.21411 1.00970 0.95522 0.96429 1.21301 0.93185 1.00178 0.99668 1.20470 0.95475 0.96867 0.99532 1.21345 0.84176 0.99737 0.98885 1.62401 1.15661 1.11784 1.34562 1.21926 0.99726 0.94856 0.88385 1.19451 0.96055 0.92844 0.95062 1.21335 1.31851 0.97562 1.06252 0.95729 1.25995 0.97320 0.98198 0.97511 1.70072 1.47761 1.12433 1.28875 0.85631 0.79385 0.78580 0.78913 1.19422 1.20565 1.16481 0.92903 0.92047 0.84292 0.91734 0.86206 0.84217 0.83583 0.83900 0.85009 0.86781 0.89491 0.95511 0.92630 0.95578 0.96469 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.74 16 2 O -0.36 -8.67 10.51 -51.38 -0.54 -9.21 16 3 C 0.47 14.39 7.01 71.24 0.50 14.89 16 4 O -0.52 -20.71 14.22 21.97 0.31 -20.39 16 5 C 0.10 2.65 2.70 44.08 0.12 2.77 16 6 H 0.15 3.18 8.05 -2.39 -0.02 3.16 16 7 C -0.10 -2.51 4.41 29.82 0.13 -2.38 16 8 C -0.09 -2.46 5.08 -19.85 -0.10 -2.56 16 9 C -0.12 -2.80 9.66 22.33 0.22 -2.59 16 10 C -0.13 -2.64 10.05 22.23 0.22 -2.42 16 11 C -0.13 -2.77 10.05 22.22 0.22 -2.55 16 12 C -0.12 -3.19 9.65 22.33 0.22 -2.98 16 13 C -0.12 -3.46 5.35 -19.87 -0.11 -3.57 16 14 C 0.09 2.56 5.26 85.58 0.45 3.01 16 15 N -0.52 -18.25 4.58 -880.34 -4.03 -22.28 16 16 C 0.08 3.47 3.96 86.30 0.34 3.81 16 17 C 0.00 0.17 3.41 29.85 0.10 0.28 16 18 C -0.53 -32.72 9.66 25.60 0.25 -32.47 16 19 H 0.02 1.67 7.99 -2.91 -0.02 1.65 16 20 C 0.01 0.40 5.47 84.65 0.46 0.86 16 21 N -0.95 -61.89 13.96 21.44 0.30 -61.59 16 22 Si 0.95 45.97 27.47 68.60 1.88 47.86 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 26 H 0.05 1.13 8.13 -2.38 -0.02 1.11 16 27 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 28 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.96 6.74 -2.38 -0.02 1.94 16 30 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.09 2.91 5.71 -2.39 -0.01 2.90 16 37 H 0.03 1.20 5.42 -2.39 -0.01 1.19 16 38 H 0.06 2.77 6.12 -2.39 -0.01 2.75 16 39 H 0.03 1.26 5.50 -2.39 -0.01 1.25 16 40 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 41 H 0.27 16.11 8.31 -92.70 -0.77 15.34 16 Total: -1.00 -77.42 328.09 3.12 -74.31 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.97 Total: 15.47 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 4.22 Total: -24.15 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -3.73 Total: -83.87 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.23 Total: -29.61 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.86 kcal Total: -77.42 3.12 -74.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176841667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.925 kcal (2) G-P(sol) polarization free energy of solvation -77.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds