Wall clock time and date at job start Tue Mar 31 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 117.00085 * 2 1 4 4 O 1.20826 * 120.00307 * 359.72506 * 3 2 1 5 5 C 1.50699 * 120.00073 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.62947 * 300.39825 * 5 3 2 7 7 C 1.52900 * 109.63216 * 60.98910 * 5 3 2 8 8 C 1.50717 * 109.95430 * 170.12580 * 7 5 3 9 9 C 1.38680 * 118.48388 * 163.30127 * 8 7 5 10 10 C 1.38034 * 120.34232 * 179.55285 * 9 8 7 11 11 C 1.38254 * 119.83032 * 0.03268 * 10 9 8 12 12 C 1.38011 * 119.87114 * 0.07780 * 11 10 9 13 13 C 1.37831 * 121.65964 * 343.02554 * 8 7 5 14 14 C 1.50623 * 121.84977 * 0.53317 * 13 8 7 15 15 N 1.46631 * 110.49571 * 342.42608 * 14 13 8 16 16 C 1.46908 * 110.99629 * 289.09845 * 15 14 13 17 17 C 1.52996 * 109.46923 * 306.66518 * 16 15 14 18 18 C 1.50699 * 109.46756 * 185.56994 * 17 16 15 19 19 H 1.08002 * 120.00401 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99985 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00004 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00202 * 180.02562 * 20 18 17 23 23 H 1.48512 * 109.47152 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47131 * 120.00053 * 22 20 18 25 25 H 1.48494 * 109.47162 * 240.00353 * 22 20 18 26 26 H 1.09007 * 109.46879 * 59.99722 * 1 2 3 27 27 H 1.08991 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47066 * 299.99996 * 1 2 3 29 29 H 1.08997 * 109.38621 * 290.26948 * 7 5 3 30 30 H 1.08998 * 109.38851 * 49.97088 * 7 5 3 31 31 H 1.07994 * 119.82776 * 359.56847 * 9 8 7 32 32 H 1.08003 * 120.07972 * 180.02562 * 10 9 8 33 33 H 1.08004 * 120.06481 * 180.02562 * 11 10 9 34 34 H 1.08007 * 119.81285 * 179.97438 * 12 11 10 35 35 H 1.08991 * 109.27522 * 222.15949 * 14 13 8 36 36 H 1.09006 * 109.26729 * 102.67961 * 14 13 8 37 37 H 1.08993 * 109.46884 * 66.66536 * 16 15 14 38 38 H 1.09000 * 109.47032 * 186.66613 * 16 15 14 39 39 H 1.08995 * 109.47455 * 305.57191 * 17 16 15 40 40 H 1.08999 * 109.46991 * 65.57649 * 17 16 15 41 41 H 0.96993 * 120.00457 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0050 5 6 3.5664 1.2748 -0.0006 6 1 3.9596 0.7750 0.8847 7 6 4.1154 0.6045 -1.2604 8 6 5.5900 0.8870 -1.3923 9 6 6.3402 0.0983 -2.2516 10 6 7.6920 0.3293 -2.4087 11 6 8.3013 1.3518 -1.7054 12 6 7.5560 2.1357 -0.8483 13 6 6.1974 1.9046 -0.6885 14 6 5.4271 2.7846 0.2606 15 7 3.9876 2.6848 -0.0004 16 6 3.6358 3.3395 -1.2675 17 6 4.1691 4.7735 -1.2659 18 6 3.6924 5.4881 -2.5041 19 1 3.0708 4.9713 -3.2203 20 6 4.0489 6.8021 -2.7221 21 7 4.8054 7.4316 -1.8497 22 14 3.4574 7.6881 -4.2564 23 1 2.6261 6.7659 -5.0712 24 1 2.6467 8.8690 -3.8646 25 1 4.6286 8.1340 -5.0530 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9576 -0.4721 -1.1954 30 1 3.5927 0.9933 -2.1342 31 1 5.8643 -0.7005 -2.8008 32 1 8.2721 -0.2873 -3.0794 33 1 9.3587 1.5361 -1.8258 34 1 8.0331 2.9340 -0.2989 35 1 5.7453 3.8189 0.1309 36 1 5.6293 2.4722 1.2852 37 1 4.0789 2.7880 -2.0967 38 1 2.5517 3.3552 -1.3796 39 1 3.8042 5.2959 -0.3816 40 1 5.2589 4.7558 -1.2535 41 1 5.0565 8.3558 -2.0031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176841684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:19 Heat of formation + Delta-G solvation = -49.729521 kcal Electronic energy + Delta-G solvation = -23541.358855 eV Core-core repulsion = 20193.357939 eV Total energy + Delta-G solvation = -3348.000916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91199 -39.65861 -37.26214 -36.01135 -33.49271 -32.53905 -31.14567 -30.22309 -28.80385 -27.60899 -25.44198 -24.47879 -23.37207 -22.02791 -21.16412 -20.76666 -18.65747 -17.37659 -16.91127 -16.39209 -16.09991 -16.02956 -15.25311 -14.95550 -14.70616 -14.32903 -14.27005 -13.92985 -13.53237 -13.18522 -12.92109 -12.61892 -12.59039 -12.14184 -12.10308 -11.95653 -11.43942 -11.33239 -11.19927 -11.00419 -10.89645 -10.86213 -10.66931 -10.50669 -10.06722 -9.74638 -9.32260 -9.03309 -8.58957 -8.39225 -8.28015 -7.86623 -5.96025 -3.96836 1.51326 1.55277 2.41311 2.70785 3.34025 3.41142 3.45706 3.90393 4.28310 4.53174 4.68768 4.87959 5.00620 5.06081 5.10940 5.12524 5.17772 5.19843 5.21195 5.40512 5.51495 5.53343 5.65403 5.70226 5.80320 5.86297 6.05479 6.16723 6.26211 6.41396 6.45536 6.49823 6.60156 6.66647 6.77739 7.05694 7.17217 7.34093 7.44322 7.75944 7.91902 8.01619 8.08791 8.48056 9.08968 9.66090 11.15710 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.006506 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.856877 B = 4302.575787 C = 6159.620813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.472 6.472 5 C 0.094 3.906 6 H 0.115 0.885 7 C -0.105 4.105 8 C -0.076 4.076 9 C -0.117 4.117 10 C -0.126 4.126 11 C -0.122 4.122 12 C -0.108 4.108 13 C -0.097 4.097 14 C 0.084 3.916 15 N -0.508 5.508 16 C 0.049 3.951 17 C 0.028 3.972 18 C -0.515 4.515 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.890 3.110 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.027 0.973 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.017 0.983 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 -18.131 3.600 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.302 3.698 4 O -0.356 6.356 5 C -0.016 4.016 6 H 0.133 0.867 7 C -0.144 4.144 8 C -0.077 4.077 9 C -0.135 4.135 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.127 4.127 13 C -0.098 4.098 14 C -0.043 4.043 15 N -0.230 5.230 16 C -0.077 4.077 17 C -0.009 4.009 18 C -0.554 4.554 19 H 0.071 0.929 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.879 -17.382 4.023 17.863 hybrid contribution -0.021 0.231 -1.613 1.629 sum 0.858 -17.152 2.411 17.341 Atomic orbital electron populations 1.23209 0.76695 1.03220 1.02648 1.86478 1.23126 1.33883 1.84802 1.23559 0.91609 0.81350 0.73259 1.90715 1.66427 1.35874 1.42537 1.21243 0.87473 0.92952 0.99969 0.86678 1.20983 0.92886 1.01647 0.98855 1.19347 0.94577 0.95983 0.97761 1.20970 0.94153 0.99743 0.98647 1.20991 0.94801 0.98524 1.00101 1.21056 0.99740 0.95971 0.97204 1.21097 0.93442 0.99323 0.98797 1.20478 0.94802 0.96025 0.98531 1.21365 0.85466 1.00846 0.96644 1.62559 1.13897 1.09065 1.37512 1.22630 1.01435 0.97590 0.86087 1.19133 0.95818 0.88382 0.97536 1.21178 1.31284 0.96746 1.06168 0.92875 1.24962 0.95234 0.97489 0.96561 1.69967 1.36764 1.11312 1.35332 0.86561 0.78527 0.79743 0.83337 1.19818 1.20973 1.21066 0.91948 0.88420 0.91970 0.89396 0.89536 0.86401 0.86419 0.86305 0.85831 0.86886 0.89859 0.95522 0.90356 0.95550 0.96475 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -4.83 10.51 -39.24 -0.41 -5.24 16 3 C 0.46 7.43 7.00 36.01 0.25 7.69 16 4 O -0.47 -9.36 14.19 -18.75 -0.27 -9.62 16 5 C 0.09 1.43 2.71 -68.78 -0.19 1.24 16 6 H 0.12 1.49 8.05 -51.93 -0.42 1.07 16 7 C -0.11 -1.47 4.41 -27.93 -0.12 -1.59 16 8 C -0.08 -1.14 5.09 -104.60 -0.53 -1.67 16 9 C -0.12 -1.55 9.66 -39.49 -0.38 -1.93 16 10 C -0.13 -1.58 10.05 -39.65 -0.40 -1.98 16 11 C -0.12 -1.59 10.05 -39.66 -0.40 -1.99 16 12 C -0.11 -1.58 9.65 -39.48 -0.38 -1.96 16 13 C -0.10 -1.53 5.36 -104.63 -0.56 -2.09 16 14 C 0.08 1.41 5.26 -5.16 -0.03 1.38 16 15 N -0.51 -9.45 4.58 -229.60 -1.05 -10.51 16 16 C 0.05 1.08 3.96 -3.82 -0.02 1.06 16 17 C 0.03 0.76 4.34 -27.89 -0.12 0.64 16 18 C -0.51 -15.05 9.11 -34.44 -0.31 -15.36 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 22 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.33 6.73 -51.93 -0.35 0.98 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 35 H 0.11 2.15 5.70 -51.93 -0.30 1.86 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.59 5.42 -51.93 -0.28 0.31 16 38 H 0.08 1.88 6.09 -51.93 -0.32 1.56 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.47 6.44 -51.93 -0.33 0.13 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -33.43 331.63 -9.00 -42.43 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.76 Total: 0.68 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.22 Total: -13.50 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.32 Total: -36.97 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.68 Total: -14.87 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.43 -9.00 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176841684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.300 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds