Wall clock time and date at job start Tue Mar 31 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 117.00085 * 2 1 4 4 O 1.20826 * 120.00307 * 359.72506 * 3 2 1 5 5 C 1.50699 * 120.00073 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.62947 * 300.39825 * 5 3 2 7 7 C 1.52900 * 109.63216 * 60.98910 * 5 3 2 8 8 C 1.50717 * 109.95430 * 170.12580 * 7 5 3 9 9 C 1.38680 * 118.48388 * 163.30127 * 8 7 5 10 10 C 1.38034 * 120.34232 * 179.55285 * 9 8 7 11 11 C 1.38254 * 119.83032 * 0.03268 * 10 9 8 12 12 C 1.38011 * 119.87114 * 0.07780 * 11 10 9 13 13 C 1.37831 * 121.65964 * 343.02554 * 8 7 5 14 14 C 1.50623 * 121.84977 * 0.53317 * 13 8 7 15 15 N 1.46631 * 110.49571 * 342.42608 * 14 13 8 16 16 C 1.46908 * 110.99629 * 289.09845 * 15 14 13 17 17 C 1.52996 * 109.46923 * 306.66518 * 16 15 14 18 18 C 1.50699 * 109.46756 * 185.56994 * 17 16 15 19 19 H 1.08002 * 120.00401 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99985 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00004 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00202 * 180.02562 * 20 18 17 23 23 H 1.48512 * 109.47152 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47131 * 120.00053 * 22 20 18 25 25 H 1.48494 * 109.47162 * 240.00353 * 22 20 18 26 26 H 1.09007 * 109.46879 * 59.99722 * 1 2 3 27 27 H 1.08991 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47066 * 299.99996 * 1 2 3 29 29 H 1.08997 * 109.38621 * 290.26948 * 7 5 3 30 30 H 1.08998 * 109.38851 * 49.97088 * 7 5 3 31 31 H 1.07994 * 119.82776 * 359.56847 * 9 8 7 32 32 H 1.08003 * 120.07972 * 180.02562 * 10 9 8 33 33 H 1.08004 * 120.06481 * 180.02562 * 11 10 9 34 34 H 1.08007 * 119.81285 * 179.97438 * 12 11 10 35 35 H 1.08991 * 109.27522 * 222.15949 * 14 13 8 36 36 H 1.09006 * 109.26729 * 102.67961 * 14 13 8 37 37 H 1.08993 * 109.46884 * 66.66536 * 16 15 14 38 38 H 1.09000 * 109.47032 * 186.66613 * 16 15 14 39 39 H 1.08995 * 109.47455 * 305.57191 * 17 16 15 40 40 H 1.08999 * 109.46991 * 65.57649 * 17 16 15 41 41 H 0.96993 * 120.00457 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0050 5 6 3.5664 1.2748 -0.0006 6 1 3.9596 0.7750 0.8847 7 6 4.1154 0.6045 -1.2604 8 6 5.5900 0.8870 -1.3923 9 6 6.3402 0.0983 -2.2516 10 6 7.6920 0.3293 -2.4087 11 6 8.3013 1.3518 -1.7054 12 6 7.5560 2.1357 -0.8483 13 6 6.1974 1.9046 -0.6885 14 6 5.4271 2.7846 0.2606 15 7 3.9876 2.6848 -0.0004 16 6 3.6358 3.3395 -1.2675 17 6 4.1691 4.7735 -1.2659 18 6 3.6924 5.4881 -2.5041 19 1 3.0708 4.9713 -3.2203 20 6 4.0489 6.8021 -2.7221 21 7 4.8054 7.4316 -1.8497 22 14 3.4574 7.6881 -4.2564 23 1 2.6261 6.7659 -5.0712 24 1 2.6467 8.8690 -3.8646 25 1 4.6286 8.1340 -5.0530 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9576 -0.4721 -1.1954 30 1 3.5927 0.9933 -2.1342 31 1 5.8643 -0.7005 -2.8008 32 1 8.2721 -0.2873 -3.0794 33 1 9.3587 1.5361 -1.8258 34 1 8.0331 2.9340 -0.2989 35 1 5.7453 3.8189 0.1309 36 1 5.6293 2.4722 1.2852 37 1 4.0789 2.7880 -2.0967 38 1 2.5517 3.3552 -1.3796 39 1 3.8042 5.2959 -0.3816 40 1 5.2589 4.7558 -1.2535 41 1 5.0565 8.3558 -2.0031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176841684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:18 Heat of formation + Delta-G solvation = -70.422272 kcal Electronic energy + Delta-G solvation = -23542.256160 eV Core-core repulsion = 20193.357939 eV Total energy + Delta-G solvation = -3348.898221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.16683 -40.82606 -38.48402 -37.28088 -35.45591 -33.96893 -32.57897 -31.59479 -30.29088 -28.56518 -27.22355 -25.66900 -25.00687 -23.13422 -22.68950 -22.08195 -20.01085 -18.77089 -18.58065 -17.80257 -17.39309 -17.16834 -16.58710 -16.52832 -16.02252 -15.91983 -15.61628 -15.26863 -14.66485 -14.36710 -14.22713 -14.03647 -13.96190 -13.75542 -13.38701 -13.27283 -12.98189 -12.85433 -12.62126 -12.51153 -12.41396 -12.31954 -11.95607 -11.82727 -11.66851 -11.53138 -11.30974 -11.05069 -10.55551 -9.64379 -9.47447 -9.32786 -8.22210 -6.32494 0.44639 0.49659 1.15899 1.35953 1.37246 1.50092 1.59362 2.37820 2.84174 2.94608 3.10954 3.58838 3.73372 3.82121 3.94238 4.05165 4.13602 4.26040 4.31996 4.34880 4.35246 4.42928 4.53977 4.64926 4.69119 4.71509 4.73858 4.78644 4.91049 5.03773 5.14128 5.17875 5.33696 5.40907 5.49577 5.60752 5.63651 5.71220 5.75540 6.02123 6.04323 6.14443 6.27355 6.78820 6.82113 7.35520 8.90195 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.006506 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.856877 B = 4302.575787 C = 6159.620813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.519 6.519 5 C 0.093 3.907 6 H 0.145 0.855 7 C -0.096 4.096 8 C -0.091 4.091 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.125 4.125 12 C -0.127 4.127 13 C -0.119 4.119 14 C 0.089 3.911 15 N -0.524 5.524 16 C 0.076 3.924 17 C 0.041 3.959 18 C -0.543 4.543 19 H 0.051 0.949 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.273 1.273 26 H 0.054 0.946 27 H 0.139 0.861 28 H 0.059 0.941 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.027 0.973 38 H 0.058 0.942 39 H -0.011 1.011 40 H 0.002 0.998 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -20.521 2.346 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.406 6.406 5 C -0.017 4.017 6 H 0.162 0.838 7 C -0.135 4.135 8 C -0.091 4.091 9 C -0.137 4.137 10 C -0.142 4.142 11 C -0.143 4.143 12 C -0.146 4.146 13 C -0.121 4.121 14 C -0.038 4.038 15 N -0.246 5.246 16 C -0.051 4.051 17 C 0.004 3.996 18 C -0.581 4.581 19 H 0.069 0.931 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.787 3.213 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.198 1.198 26 H 0.073 0.927 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.140 0.860 30 H 0.087 0.913 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.008 0.992 40 H 0.020 0.980 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.207 -19.813 2.779 20.043 hybrid contribution -0.108 0.902 -1.168 1.480 sum 1.099 -18.910 1.611 19.011 Atomic orbital electron populations 1.23549 0.74864 1.05807 1.02236 1.86465 1.24818 1.31948 1.83965 1.23738 0.91922 0.81461 0.71942 1.90706 1.67405 1.37546 1.44953 1.21397 0.87228 0.90920 1.02124 0.83784 1.20935 0.92167 1.03348 0.97013 1.19517 0.95043 0.96251 0.98324 1.21311 0.94528 0.99882 0.98001 1.21413 0.94886 0.98186 0.99719 1.21389 1.00899 0.95628 0.96402 1.21269 0.93417 1.00073 0.99795 1.20438 0.95346 0.96804 0.99520 1.21237 0.84557 0.99421 0.98575 1.62381 1.15296 1.11723 1.35249 1.22073 0.99602 0.95286 0.88137 1.18908 0.94726 0.90841 0.95154 1.21563 1.31760 0.97714 1.07086 0.93058 1.25895 0.95110 0.98255 1.00041 1.70091 1.37569 1.11844 1.37285 0.85437 0.78382 0.78387 0.79093 1.18995 1.20197 1.19839 0.92691 0.84259 0.92197 0.86010 0.91337 0.83767 0.83293 0.84002 0.85805 0.90369 0.87470 0.95470 0.92399 0.99249 0.97955 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -8.76 10.51 -51.35 -0.54 -9.30 16 3 C 0.47 14.86 7.00 71.24 0.50 15.36 16 4 O -0.52 -21.16 14.19 21.97 0.31 -20.85 16 5 C 0.09 2.75 2.71 44.09 0.12 2.87 16 6 H 0.14 3.43 8.05 -2.39 -0.02 3.41 16 7 C -0.10 -2.53 4.41 29.82 0.13 -2.40 16 8 C -0.09 -2.57 5.09 -19.85 -0.10 -2.67 16 9 C -0.12 -2.81 9.66 22.33 0.22 -2.59 16 10 C -0.12 -2.73 10.05 22.23 0.22 -2.51 16 11 C -0.13 -3.04 10.05 22.22 0.22 -2.82 16 12 C -0.13 -3.70 9.65 22.33 0.22 -3.48 16 13 C -0.12 -3.77 5.36 -19.87 -0.11 -3.88 16 14 C 0.09 3.10 5.26 85.58 0.45 3.55 16 15 N -0.52 -20.12 4.58 -880.33 -4.04 -24.15 16 16 C 0.08 3.54 3.96 86.30 0.34 3.88 16 17 C 0.04 2.31 4.34 29.85 0.13 2.44 16 18 C -0.54 -32.86 9.11 25.60 0.23 -32.63 16 19 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 20 C 0.01 0.31 5.46 84.66 0.46 0.77 16 21 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 22 Si 0.96 46.11 29.54 68.60 2.03 48.13 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H 0.05 1.14 8.13 -2.38 -0.02 1.12 16 27 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.06 6.73 -2.39 -0.02 2.04 16 31 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.08 3.23 5.70 -2.39 -0.01 3.21 16 36 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 37 H 0.03 1.24 5.42 -2.39 -0.01 1.23 16 38 H 0.06 2.92 6.09 -2.39 -0.01 2.91 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.00 0.13 6.44 -2.39 -0.02 0.12 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.24 331.63 3.31 -71.93 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.03 Total: 14.32 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 4.23 Total: -22.37 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -3.75 Total: -81.88 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.23 Total: -30.14 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -75.24 3.31 -71.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176841684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.511 kcal (2) G-P(sol) polarization free energy of solvation -75.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds