Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42091 * 108.57961 * 2 1 4 4 O 1.42104 * 108.57754 * 228.97181 * 2 1 3 5 5 C 1.81399 * 101.92066 * 114.48676 * 2 1 3 6 6 H 1.09003 * 109.47423 * 64.99916 * 5 2 1 7 7 C 1.52994 * 109.47269 * 305.00239 * 5 2 1 8 8 C 1.53006 * 109.47453 * 180.02562 * 7 5 2 9 9 C 1.53002 * 109.47016 * 59.99655 * 8 7 5 10 10 C 1.52999 * 109.47150 * 300.00126 * 9 8 7 11 11 C 1.53000 * 109.47175 * 184.99651 * 5 2 1 12 12 H 1.09002 * 109.46679 * 60.00623 * 11 5 2 13 13 N 1.46890 * 109.47552 * 300.00282 * 11 5 2 14 14 C 1.46901 * 111.00688 * 154.99760 * 13 11 5 15 15 C 1.52992 * 109.47859 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47294 * 60.00559 * 21 19 17 23 23 H 1.48503 * 109.46954 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47431 * 300.00157 * 21 19 17 25 25 H 1.08995 * 109.47541 * 305.51168 * 1 2 3 26 26 H 1.09001 * 109.47074 * 65.51444 * 1 2 3 27 27 H 1.09009 * 109.47131 * 185.51348 * 1 2 3 28 28 H 1.09004 * 109.46808 * 299.99634 * 7 5 2 29 29 H 1.08997 * 109.47670 * 59.99889 * 7 5 2 30 30 H 1.09001 * 109.47305 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46629 * 300.00117 * 8 7 5 32 32 H 1.09003 * 109.47094 * 59.99933 * 9 8 7 33 33 H 1.08998 * 109.47002 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47629 * 300.00232 * 10 9 8 35 35 H 1.08998 * 109.47232 * 179.97438 * 10 9 8 36 36 H 1.00909 * 111.00262 * 31.04583 * 13 11 5 37 37 H 1.09002 * 109.46980 * 59.99769 * 14 13 11 38 38 H 1.09001 * 109.46628 * 300.00190 * 14 13 11 39 39 H 1.09002 * 109.47103 * 59.99734 * 15 14 13 40 40 H 1.08998 * 109.46862 * 300.00546 * 15 14 13 41 41 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 42 42 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 43 43 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.8388 -1.7678 1.6344 7 6 1.4845 0.0619 2.7146 8 6 1.8010 -0.5582 4.0771 9 6 3.3125 -0.5270 4.3129 10 6 4.0166 -1.3247 3.2135 11 6 3.7001 -0.7051 1.8513 12 1 4.0499 0.3270 1.8323 13 7 4.3762 -1.4709 0.7958 14 6 5.7591 -1.0100 0.6144 15 6 6.4290 -1.8287 -0.4909 16 6 7.8691 -1.3482 -0.6802 17 6 8.5290 -2.1551 -1.7685 18 1 7.9764 -2.9327 -2.2748 19 6 9.8380 -1.9000 -2.1185 20 7 10.5108 -0.9528 -1.5023 21 14 10.6558 -2.8998 -3.4680 22 1 9.9047 -2.7259 -4.7372 23 1 12.0536 -2.4334 -3.6516 24 1 10.6593 -4.3353 -3.0876 25 1 -0.3634 0.5969 0.8365 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3634 -1.0230 0.0987 28 1 1.8344 1.0941 2.6955 29 1 0.4078 0.0402 2.5465 30 1 1.2997 0.0104 4.8604 31 1 1.4515 -1.5904 4.0964 32 1 3.6620 0.5053 4.2934 33 1 3.5380 -0.9692 5.2833 34 1 3.6671 -2.3570 3.2328 35 1 5.0934 -1.3021 3.3811 36 1 3.8624 -1.4230 -0.0714 37 1 6.3099 -1.1378 1.5463 38 1 5.7572 0.0437 0.3351 39 1 5.8781 -1.7005 -1.4227 40 1 6.4308 -2.8825 -0.2120 41 1 8.4203 -1.4760 0.2515 42 1 7.8667 -0.2945 -0.9593 43 1 11.4318 -0.7736 -1.7483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182812795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = -94.555984 kcal Electronic energy + Delta-G solvation = -21928.538423 eV Core-core repulsion = 18714.037637 eV Total energy + Delta-G solvation = -3214.500786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.23312 -37.30232 -36.33503 -35.57383 -33.37412 -31.70139 -31.41358 -29.66097 -28.81555 -25.75938 -23.56922 -22.80428 -21.52461 -20.36118 -19.94218 -19.03828 -17.22226 -16.74588 -16.20276 -16.11309 -15.58056 -14.89491 -14.80984 -14.42187 -14.36250 -14.03974 -13.69365 -13.53869 -13.48905 -12.86247 -12.67248 -12.40332 -12.20149 -12.15182 -12.03972 -11.79229 -11.57993 -11.47687 -11.32189 -11.20236 -10.88551 -10.77449 -10.59412 -10.49122 -10.42158 -10.04209 -9.58704 -9.24292 -8.97858 -8.25814 -8.23162 -5.90899 -3.92389 -0.32069 2.40479 3.31950 3.40705 3.43903 3.47443 3.59197 3.98329 4.11427 4.42130 4.47579 4.50311 4.56385 4.63274 4.74247 4.95647 4.97314 5.12382 5.18090 5.22773 5.38244 5.44786 5.49312 5.57823 5.75609 5.80107 5.85066 5.89709 5.99305 6.08366 6.24195 6.42168 6.79144 6.84309 7.23401 7.32098 7.59632 7.78225 7.93732 8.10044 8.53856 9.14477 9.70926 11.20679 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.003651 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.358232 B = 7666.414607 C = 8501.387608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.401 3.599 3 O -0.933 6.933 4 O -0.928 6.928 5 C -0.570 4.570 6 H 0.147 0.853 7 C -0.108 4.108 8 C -0.110 4.110 9 C -0.124 4.124 10 C -0.099 4.099 11 C 0.104 3.896 12 H 0.060 0.940 13 N -0.703 5.703 14 C 0.057 3.943 15 C -0.109 4.109 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.348 0.652 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.483 2.442 11.994 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.584 3.416 3 O -0.930 6.930 4 O -0.923 6.923 5 C -0.680 4.680 6 H 0.165 0.835 7 C -0.147 4.147 8 C -0.149 4.149 9 C -0.162 4.162 10 C -0.138 4.138 11 C -0.007 4.007 12 H 0.078 0.922 13 N -0.343 5.343 14 C -0.071 4.071 15 C -0.147 4.147 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.173 0.827 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.033 0.967 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.586 2.326 11.672 26.418 hybrid contribution -0.224 -0.008 -0.659 0.696 sum -23.810 2.318 11.013 26.336 Atomic orbital electron populations 1.30291 1.26886 1.11676 1.11788 1.08586 0.78654 0.76342 0.78001 1.93610 1.78798 1.34179 1.86372 1.93585 1.78171 1.66734 1.53852 1.30353 1.05616 1.12857 1.19134 0.83535 1.21485 0.99233 0.99602 0.94391 1.21456 0.96877 1.01198 0.95335 1.21600 0.94780 1.00991 0.98835 1.21470 1.01044 0.99748 0.91568 1.21267 0.86972 0.97276 0.95192 0.92167 1.60768 1.04777 1.57492 1.11219 1.22229 0.86938 0.97184 1.00793 1.21649 0.98498 0.99099 0.95493 1.19070 0.89133 0.96475 0.96881 1.21237 0.97000 1.18268 1.19086 0.92655 1.25025 0.97461 0.95379 0.96674 1.69961 1.10351 1.31432 1.41974 0.86649 0.78296 0.80485 0.82496 1.20252 1.21370 1.20258 0.85191 0.85177 0.85129 0.89757 0.90509 0.91376 0.91424 0.91718 0.91413 0.90876 0.90892 0.82676 0.91049 0.95347 0.93269 0.92375 0.96544 0.96710 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.48 10.01 101.05 1.01 -2.47 16 2 S 2.40 24.94 4.59 -107.50 -0.49 24.44 16 3 O -0.93 -13.06 18.06 -57.83 -1.04 -14.10 16 4 O -0.93 -13.40 15.55 -57.83 -0.90 -14.30 16 5 C -0.57 -5.05 2.27 -26.73 -0.06 -5.11 16 6 H 0.15 1.02 8.14 -51.92 -0.42 0.59 16 7 C -0.11 -0.69 4.91 -26.73 -0.13 -0.82 16 8 C -0.11 -0.70 5.92 -26.73 -0.16 -0.85 16 9 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 10 C -0.10 -1.08 5.42 -26.75 -0.15 -1.23 16 11 C 0.10 1.30 1.96 -67.74 -0.13 1.17 16 12 H 0.06 0.80 7.80 -51.93 -0.41 0.40 16 13 N -0.70 -11.39 6.31 -106.76 -0.67 -12.07 16 14 C 0.06 1.08 5.48 -3.83 -0.02 1.06 16 15 C -0.11 -2.49 5.41 -26.74 -0.14 -2.63 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -15.42 9.11 -34.44 -0.31 -15.74 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -27.91 13.29 55.43 0.74 -27.17 16 21 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.13 0.40 6.77 -51.93 -0.35 0.05 16 26 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.25 6.39 -51.93 -0.33 -0.08 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.88 7.45 -51.93 -0.39 0.50 16 36 H 0.35 5.81 5.02 -39.29 -0.20 5.62 16 37 H 0.07 1.31 7.43 -51.93 -0.39 0.92 16 38 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -36.71 346.33 -10.18 -46.88 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.51 Total: -0.59 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -0.49 Total: -25.78 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.06 Total: -39.24 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.94 Total: -28.41 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 24.94 SS G_CDS: -0.49 Total: 24.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.71 -10.18 -46.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182812795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.671 kcal (2) G-P(sol) polarization free energy of solvation -36.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds