Wall clock time and date at job start Tue Mar 31 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42091 * 108.57961 * 2 1 4 4 O 1.42104 * 108.57754 * 228.97181 * 2 1 3 5 5 C 1.81399 * 101.92066 * 114.48676 * 2 1 3 6 6 H 1.09003 * 109.47423 * 64.99916 * 5 2 1 7 7 C 1.52994 * 109.47269 * 305.00239 * 5 2 1 8 8 C 1.53006 * 109.47453 * 180.02562 * 7 5 2 9 9 C 1.53002 * 109.47016 * 59.99655 * 8 7 5 10 10 C 1.52999 * 109.47150 * 300.00126 * 9 8 7 11 11 C 1.53000 * 109.47175 * 184.99651 * 5 2 1 12 12 H 1.09002 * 109.46679 * 60.00623 * 11 5 2 13 13 N 1.46890 * 109.47552 * 300.00282 * 11 5 2 14 14 C 1.46901 * 111.00688 * 154.99760 * 13 11 5 15 15 C 1.52992 * 109.47859 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47294 * 60.00559 * 21 19 17 23 23 H 1.48503 * 109.46954 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47431 * 300.00157 * 21 19 17 25 25 H 1.08995 * 109.47541 * 305.51168 * 1 2 3 26 26 H 1.09001 * 109.47074 * 65.51444 * 1 2 3 27 27 H 1.09009 * 109.47131 * 185.51348 * 1 2 3 28 28 H 1.09004 * 109.46808 * 299.99634 * 7 5 2 29 29 H 1.08997 * 109.47670 * 59.99889 * 7 5 2 30 30 H 1.09001 * 109.47305 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46629 * 300.00117 * 8 7 5 32 32 H 1.09003 * 109.47094 * 59.99933 * 9 8 7 33 33 H 1.08998 * 109.47002 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47629 * 300.00232 * 10 9 8 35 35 H 1.08998 * 109.47232 * 179.97438 * 10 9 8 36 36 H 1.00909 * 111.00262 * 31.04583 * 13 11 5 37 37 H 1.09002 * 109.46980 * 59.99769 * 14 13 11 38 38 H 1.09001 * 109.46628 * 300.00190 * 14 13 11 39 39 H 1.09002 * 109.47103 * 59.99734 * 15 14 13 40 40 H 1.08998 * 109.46862 * 300.00546 * 15 14 13 41 41 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 42 42 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 43 43 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.8388 -1.7678 1.6344 7 6 1.4845 0.0619 2.7146 8 6 1.8010 -0.5582 4.0771 9 6 3.3125 -0.5270 4.3129 10 6 4.0166 -1.3247 3.2135 11 6 3.7001 -0.7051 1.8513 12 1 4.0499 0.3270 1.8323 13 7 4.3762 -1.4709 0.7958 14 6 5.7591 -1.0100 0.6144 15 6 6.4290 -1.8287 -0.4909 16 6 7.8691 -1.3482 -0.6802 17 6 8.5290 -2.1551 -1.7685 18 1 7.9764 -2.9327 -2.2748 19 6 9.8380 -1.9000 -2.1185 20 7 10.5108 -0.9528 -1.5023 21 14 10.6558 -2.8998 -3.4680 22 1 9.9047 -2.7259 -4.7372 23 1 12.0536 -2.4334 -3.6516 24 1 10.6593 -4.3353 -3.0876 25 1 -0.3634 0.5969 0.8365 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3634 -1.0230 0.0987 28 1 1.8344 1.0941 2.6955 29 1 0.4078 0.0402 2.5465 30 1 1.2997 0.0104 4.8604 31 1 1.4515 -1.5904 4.0964 32 1 3.6620 0.5053 4.2934 33 1 3.5380 -0.9692 5.2833 34 1 3.6671 -2.3570 3.2328 35 1 5.0934 -1.3021 3.3811 36 1 3.8624 -1.4230 -0.0714 37 1 6.3099 -1.1378 1.5463 38 1 5.7572 0.0437 0.3351 39 1 5.8781 -1.7005 -1.4227 40 1 6.4308 -2.8825 -0.2120 41 1 8.4203 -1.4760 0.2515 42 1 7.8667 -0.2945 -0.9593 43 1 11.4318 -0.7736 -1.7483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182812795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:33 Heat of formation + Delta-G solvation = -122.415430 kcal Electronic energy + Delta-G solvation = -21929.746499 eV Core-core repulsion = 18714.037637 eV Total energy + Delta-G solvation = -3215.708862 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.10292 -38.21949 -37.27979 -36.93852 -35.28838 -33.23253 -32.34112 -30.24163 -30.08126 -27.57951 -24.65934 -24.14928 -22.56532 -22.02212 -20.92189 -19.86779 -18.51262 -17.99357 -17.65439 -16.95538 -16.63740 -16.53308 -16.10052 -15.79472 -15.14192 -15.05136 -14.67382 -14.35992 -14.32348 -13.97415 -13.80625 -13.58755 -13.37847 -13.33144 -13.19649 -13.12820 -12.82080 -12.63421 -12.49354 -12.35118 -12.28139 -12.14706 -11.93695 -11.62460 -11.56721 -11.42797 -11.30608 -11.05904 -10.80473 -10.57026 -9.57890 -8.21585 -6.33345 -1.04445 1.38333 1.42841 1.50749 1.72303 2.40106 2.57827 2.76781 3.10904 3.11470 3.36338 3.68672 3.84282 4.05374 4.09649 4.14883 4.16628 4.20286 4.29332 4.35080 4.38264 4.47326 4.62264 4.73737 4.82093 4.88679 4.94617 4.97163 5.01621 5.16548 5.17718 5.22423 5.26350 5.34414 5.47134 5.52031 5.68292 5.81325 5.87887 6.23519 6.25203 6.81899 7.35567 8.90501 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.003651 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.358232 B = 7666.414607 C = 8501.387608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.625 4.625 2 S 2.373 3.627 3 O -0.986 6.986 4 O -0.983 6.983 5 C -0.555 4.555 6 H 0.173 0.827 7 C -0.113 4.113 8 C -0.108 4.108 9 C -0.124 4.124 10 C -0.098 4.098 11 C 0.092 3.908 12 H 0.043 0.957 13 N -0.705 5.705 14 C 0.067 3.933 15 C -0.096 4.096 16 C 0.026 3.974 17 C -0.548 4.548 18 H 0.059 0.941 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.265 1.265 25 H 0.164 0.836 26 H 0.139 0.861 27 H 0.163 0.837 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.346 0.654 37 H 0.076 0.924 38 H 0.015 0.985 39 H 0.041 0.959 40 H 0.060 0.940 41 H -0.003 1.003 42 H -0.012 1.012 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.522 1.281 12.853 30.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.564 3.436 3 O -0.983 6.983 4 O -0.979 6.979 5 C -0.666 4.666 6 H 0.190 0.810 7 C -0.151 4.151 8 C -0.146 4.146 9 C -0.162 4.162 10 C -0.137 4.137 11 C -0.018 4.018 12 H 0.061 0.939 13 N -0.344 5.344 14 C -0.062 4.062 15 C -0.134 4.134 16 C -0.011 4.011 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.793 3.207 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.182 0.818 26 H 0.158 0.842 27 H 0.181 0.819 28 H 0.095 0.905 29 H 0.140 0.860 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.170 0.830 37 H 0.094 0.906 38 H 0.034 0.966 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.016 0.984 42 H 0.006 0.994 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.595 1.173 12.529 29.422 hybrid contribution 0.652 0.383 -0.856 1.142 sum -25.943 1.556 11.673 28.490 Atomic orbital electron populations 1.30028 1.19208 1.14742 1.13939 1.08873 0.81798 0.74850 0.78042 1.93545 1.81489 1.36195 1.87049 1.93511 1.80872 1.67342 1.56191 1.30240 1.02820 1.14752 1.18813 0.80986 1.21693 1.01574 0.98601 0.93266 1.21490 0.94934 1.02456 0.95728 1.21621 0.96498 1.00014 0.98064 1.21475 1.00183 1.00458 0.91597 1.21435 0.89678 0.95962 0.94715 0.93865 1.60750 1.03410 1.58106 1.12133 1.21952 0.89047 0.95737 0.99500 1.21416 0.95885 0.99556 0.96553 1.18964 0.91800 0.94850 0.95531 1.21651 0.97931 1.18930 1.20036 0.92313 1.26029 0.98049 0.96489 0.99310 1.70098 1.10864 1.32865 1.43519 0.85438 0.77235 0.79026 0.78958 1.19309 1.20440 1.18925 0.81793 0.84239 0.81882 0.90528 0.85959 0.89187 0.90081 0.92470 0.90319 0.90384 0.93158 0.82956 0.90604 0.96646 0.94030 0.92097 0.98416 0.99403 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.87 10.01 113.37 1.14 -2.74 16 2 S 2.37 47.97 4.59 -56.49 -0.26 47.72 16 3 O -0.99 -28.70 18.06 -127.37 -2.30 -31.00 16 4 O -0.98 -29.36 15.55 -127.37 -1.98 -31.34 16 5 C -0.55 -8.82 2.27 30.59 0.07 -8.75 16 6 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 7 C -0.11 -1.03 4.91 30.59 0.15 -0.88 16 8 C -0.11 -0.94 5.92 30.60 0.18 -0.76 16 9 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 10 C -0.10 -2.11 5.42 30.58 0.17 -1.95 16 11 C 0.09 2.35 1.96 44.90 0.09 2.44 16 12 H 0.04 1.24 7.80 -2.39 -0.02 1.22 16 13 N -0.70 -23.76 6.31 -491.67 -3.10 -26.86 16 14 C 0.07 2.71 5.48 86.30 0.47 3.18 16 15 C -0.10 -4.60 5.41 30.59 0.17 -4.44 16 16 C 0.03 1.52 4.97 29.85 0.15 1.67 16 17 C -0.55 -33.61 9.11 25.60 0.23 -33.38 16 18 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 19 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 20 N -0.93 -59.46 13.29 21.45 0.28 -59.18 16 21 Si 0.97 46.50 29.54 68.60 2.03 48.53 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 25 H 0.16 -0.01 6.77 -2.39 -0.02 -0.02 16 26 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 0.03 6.39 -2.39 -0.02 0.02 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.28 7.45 -2.39 -0.02 1.26 16 36 H 0.35 12.10 5.02 -89.69 -0.45 11.65 16 37 H 0.08 2.97 7.43 -2.39 -0.02 2.95 16 38 H 0.02 0.65 8.06 -2.39 -0.02 0.63 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 2.84 8.14 -2.39 -0.02 2.83 16 41 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 43 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -85.00 346.33 -1.36 -86.35 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.52 Total: 12.65 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 3.45 Total: -46.86 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -2.82 Total: -86.04 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -4.28 Total: -62.35 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Atomic # 16 Polarization: 47.97 SS G_CDS: -0.26 Total: 47.72 kcal Total: -85.00 -1.36 -86.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182812795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.062 kcal (2) G-P(sol) polarization free energy of solvation -84.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds