Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57845 * 2 1 4 4 O 1.42096 * 108.58167 * 228.97278 * 2 1 3 5 5 C 1.81408 * 101.92249 * 114.48669 * 2 1 3 6 6 H 1.09000 * 109.46602 * 300.00260 * 5 2 1 7 7 C 1.52996 * 109.46890 * 60.00116 * 5 2 1 8 8 C 1.53002 * 109.46972 * 180.02562 * 7 5 2 9 9 C 1.52997 * 109.46817 * 299.99733 * 8 7 5 10 10 C 1.53006 * 109.47127 * 60.00361 * 9 8 7 11 11 C 1.52997 * 109.47117 * 179.97438 * 5 2 1 12 12 H 1.09002 * 109.47153 * 60.00148 * 11 5 2 13 13 N 1.46899 * 109.47254 * 300.00144 * 11 5 2 14 14 C 1.46896 * 110.99906 * 154.99817 * 13 11 5 15 15 C 1.53005 * 109.47112 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47337 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47113 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99659 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99847 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47136 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46913 * 119.99981 * 21 19 17 24 24 H 1.48496 * 109.47689 * 240.00232 * 21 19 17 25 25 H 1.09001 * 109.47222 * 305.50999 * 1 2 3 26 26 H 1.08998 * 109.47206 * 65.51265 * 1 2 3 27 27 H 1.08998 * 109.46919 * 185.51267 * 1 2 3 28 28 H 1.08996 * 109.47452 * 59.99858 * 7 5 2 29 29 H 1.09000 * 109.47054 * 300.00017 * 7 5 2 30 30 H 1.09002 * 109.47070 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47407 * 59.99513 * 8 7 5 32 32 H 1.09001 * 109.47502 * 300.00518 * 9 8 7 33 33 H 1.09001 * 109.47289 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 35 35 H 1.09000 * 109.47050 * 179.97438 * 10 9 8 36 36 H 1.00901 * 110.99869 * 278.95461 * 13 11 5 37 37 H 1.08995 * 109.47845 * 300.00006 * 14 13 11 38 38 H 1.08998 * 109.47064 * 60.00281 * 14 13 11 39 39 H 1.08997 * 109.47535 * 300.00548 * 15 14 13 40 40 H 1.09008 * 109.46659 * 60.00469 * 15 14 13 41 41 H 1.08997 * 109.47338 * 300.00770 * 16 15 14 42 42 H 1.09006 * 109.46379 * 60.00301 * 16 15 14 43 43 H 0.97003 * 119.99600 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1888 -0.7357 1.6153 6 1 1.7610 -0.1171 2.4042 7 6 1.5885 -2.1411 1.6872 8 6 1.9040 -2.7614 3.0498 9 6 3.4207 -2.8446 3.2332 10 6 4.0210 -1.4391 3.1614 11 6 3.7055 -0.8196 1.7980 12 1 4.1336 0.1815 1.7466 13 7 4.2814 -1.6535 0.7346 14 6 5.6884 -1.3052 0.4962 15 6 6.2525 -2.1933 -0.6148 16 6 7.7178 -1.8301 -0.8635 17 6 8.2732 -2.7043 -1.9582 18 1 7.6439 -3.4446 -2.4296 19 6 9.5848 -2.5590 -2.3578 20 7 10.3513 -1.6579 -1.7832 21 14 10.2734 -3.6431 -3.7142 22 1 9.2159 -4.5695 -4.1925 23 1 10.7332 -2.7931 -4.8418 24 1 11.4184 -4.4283 -3.1872 25 1 -0.3634 0.5969 0.8365 26 1 -0.3633 0.4259 -0.9352 27 1 -0.3633 -1.0229 0.0987 28 1 2.0161 -2.7597 0.8982 29 1 0.5079 -2.0818 1.5568 30 1 1.4759 -3.7625 3.1012 31 1 1.4761 -2.1427 3.8385 32 1 3.8487 -3.4633 2.4445 33 1 3.6455 -3.2869 4.2038 34 1 3.5930 -0.8205 3.9501 35 1 5.1015 -1.4984 3.2925 36 1 4.1833 -2.6342 0.9510 37 1 5.7583 -0.2596 0.1967 38 1 6.2610 -1.4603 1.4107 39 1 6.1828 -3.2388 -0.3149 40 1 5.6800 -2.0386 -1.5294 41 1 7.7872 -0.7845 -1.1635 42 1 8.2906 -1.9844 0.0511 43 1 11.2739 -1.5555 -2.0647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182812816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -92.931710 kcal Electronic energy + Delta-G solvation = -22136.675705 eV Core-core repulsion = 18922.245352 eV Total energy + Delta-G solvation = -3214.430352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.52987 -36.81308 -35.78865 -35.27697 -33.20869 -31.54518 -31.35379 -29.48572 -29.03487 -25.77483 -23.28946 -22.80111 -22.43204 -20.07461 -19.36088 -18.60340 -17.13882 -16.31337 -16.10131 -15.85215 -15.67308 -15.06663 -14.75827 -14.34598 -14.10509 -13.97788 -13.65325 -13.38847 -13.09540 -12.96123 -12.47459 -12.31663 -12.14289 -11.85620 -11.83051 -11.70495 -11.58785 -11.43235 -11.29906 -10.93074 -10.82720 -10.74576 -10.49761 -10.46247 -10.35836 -10.02898 -9.58827 -9.24964 -8.96175 -8.26689 -8.18204 -5.91912 -3.93173 0.02696 2.82002 3.37099 3.44200 3.49431 3.69467 3.91970 4.18788 4.31699 4.41814 4.54368 4.62470 4.66146 4.72304 4.89325 5.00485 5.02083 5.16127 5.21317 5.32883 5.43732 5.44136 5.49978 5.64357 5.74888 5.78766 5.85654 5.91109 5.93483 6.05179 6.11561 6.40752 6.82289 6.83437 7.24045 7.33266 7.62202 7.78502 7.93857 8.09502 8.53331 9.14379 9.70404 11.19713 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.003847 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.304994 B = 7275.936853 C = 7931.306924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.672 4.672 2 S 2.430 3.570 3 O -0.947 6.947 4 O -0.899 6.899 5 C -0.557 4.557 6 H 0.129 0.871 7 C -0.109 4.109 8 C -0.110 4.110 9 C -0.124 4.124 10 C -0.140 4.140 11 C 0.100 3.900 12 H 0.092 0.908 13 N -0.684 5.684 14 C 0.058 3.942 15 C -0.107 4.107 16 C 0.021 3.979 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.346 0.654 37 H 0.069 0.931 38 H 0.028 0.972 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.848 0.824 12.437 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.610 3.390 3 O -0.944 6.944 4 O -0.896 6.896 5 C -0.667 4.667 6 H 0.147 0.853 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.162 4.162 10 C -0.180 4.180 11 C -0.012 4.012 12 H 0.111 0.889 13 N -0.318 5.318 14 C -0.070 4.070 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.554 4.554 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.031 0.969 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.355 1.603 11.233 25.070 hybrid contribution 0.260 -1.066 0.810 1.364 sum -22.094 0.538 12.043 25.169 Atomic orbital electron populations 1.30498 1.29254 1.11078 1.11142 1.07910 0.77199 0.75776 0.78111 1.93572 1.78915 1.35236 1.86660 1.93634 1.77186 1.66075 1.52689 1.30212 1.05043 1.08316 1.23096 0.85264 1.21427 0.99803 0.93031 1.00440 1.21443 0.96342 1.00716 0.96312 1.21560 0.95445 0.97047 1.02160 1.22099 1.01465 0.96908 0.97563 1.21200 0.89498 0.99283 0.91254 0.88941 1.60778 1.19782 1.09257 1.41950 1.22191 0.85215 1.01079 0.98501 1.21626 0.99105 0.97096 0.96722 1.19078 0.89010 0.96989 0.96564 1.21308 0.96057 1.18953 1.19039 0.92576 1.25030 0.97210 0.95580 0.96776 1.69984 1.07157 1.34244 1.42344 0.86544 0.78912 0.80549 0.82044 1.19713 1.21051 1.21147 0.86004 0.85655 0.85519 0.88783 0.91136 0.91430 0.91902 0.91333 0.91603 0.91403 0.90997 0.83306 0.91277 0.95403 0.93709 0.91985 0.96515 0.96892 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.33 10.17 101.05 1.03 -3.30 16 2 S 2.43 27.07 4.76 -107.50 -0.51 26.56 16 3 O -0.95 -14.25 18.10 -57.83 -1.05 -15.29 16 4 O -0.90 -13.84 16.80 -57.83 -0.97 -14.81 16 5 C -0.56 -4.88 2.39 -26.73 -0.06 -4.94 16 6 H 0.13 0.74 8.14 -51.92 -0.42 0.32 16 7 C -0.11 -0.80 4.71 -26.73 -0.13 -0.93 16 8 C -0.11 -0.75 5.92 -26.73 -0.16 -0.91 16 9 C -0.12 -1.06 5.67 -26.73 -0.15 -1.21 16 10 C -0.14 -1.35 5.52 -26.70 -0.15 -1.50 16 11 C 0.10 1.15 2.29 -67.69 -0.16 0.99 16 12 H 0.09 1.14 7.80 -51.93 -0.40 0.74 16 13 N -0.68 -9.94 4.41 -106.71 -0.47 -10.41 16 14 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 15 C -0.11 -2.34 5.41 -26.73 -0.14 -2.49 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 21 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H 0.12 0.52 8.14 -51.92 -0.42 0.09 16 26 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.13 0.57 6.87 -51.93 -0.36 0.21 16 28 H 0.09 0.84 7.12 -51.93 -0.37 0.47 16 29 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.65 6.26 -51.93 -0.32 0.32 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.77 7.46 -51.93 -0.39 0.39 16 36 H 0.35 4.60 5.56 -39.29 -0.22 4.38 16 37 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 38 H 0.03 0.47 7.44 -51.93 -0.39 0.09 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.42 8.14 -51.92 -0.42 1.00 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -36.57 344.08 -9.99 -46.56 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.40 Total: -1.30 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -0.49 Total: -26.79 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.27 Total: -37.42 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -2.02 Total: -30.11 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 27.07 SS G_CDS: -0.51 Total: 26.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.57 -9.99 -46.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182812816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.372 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds