Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57845 * 2 1 4 4 O 1.42096 * 108.58167 * 228.97278 * 2 1 3 5 5 C 1.81408 * 101.92249 * 114.48669 * 2 1 3 6 6 H 1.09000 * 109.46602 * 300.00260 * 5 2 1 7 7 C 1.52996 * 109.46890 * 60.00116 * 5 2 1 8 8 C 1.53002 * 109.46972 * 180.02562 * 7 5 2 9 9 C 1.52997 * 109.46817 * 299.99733 * 8 7 5 10 10 C 1.53006 * 109.47127 * 60.00361 * 9 8 7 11 11 C 1.52997 * 109.47117 * 179.97438 * 5 2 1 12 12 H 1.09002 * 109.47153 * 60.00148 * 11 5 2 13 13 N 1.46899 * 109.47254 * 300.00144 * 11 5 2 14 14 C 1.46896 * 110.99906 * 154.99817 * 13 11 5 15 15 C 1.53005 * 109.47112 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47337 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47113 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99659 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99847 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47136 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46913 * 119.99981 * 21 19 17 24 24 H 1.48496 * 109.47689 * 240.00232 * 21 19 17 25 25 H 1.09001 * 109.47222 * 305.50999 * 1 2 3 26 26 H 1.08998 * 109.47206 * 65.51265 * 1 2 3 27 27 H 1.08998 * 109.46919 * 185.51267 * 1 2 3 28 28 H 1.08996 * 109.47452 * 59.99858 * 7 5 2 29 29 H 1.09000 * 109.47054 * 300.00017 * 7 5 2 30 30 H 1.09002 * 109.47070 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47407 * 59.99513 * 8 7 5 32 32 H 1.09001 * 109.47502 * 300.00518 * 9 8 7 33 33 H 1.09001 * 109.47289 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 35 35 H 1.09000 * 109.47050 * 179.97438 * 10 9 8 36 36 H 1.00901 * 110.99869 * 278.95461 * 13 11 5 37 37 H 1.08995 * 109.47845 * 300.00006 * 14 13 11 38 38 H 1.08998 * 109.47064 * 60.00281 * 14 13 11 39 39 H 1.08997 * 109.47535 * 300.00548 * 15 14 13 40 40 H 1.09008 * 109.46659 * 60.00469 * 15 14 13 41 41 H 1.08997 * 109.47338 * 300.00770 * 16 15 14 42 42 H 1.09006 * 109.46379 * 60.00301 * 16 15 14 43 43 H 0.97003 * 119.99600 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1888 -0.7357 1.6153 6 1 1.7610 -0.1171 2.4042 7 6 1.5885 -2.1411 1.6872 8 6 1.9040 -2.7614 3.0498 9 6 3.4207 -2.8446 3.2332 10 6 4.0210 -1.4391 3.1614 11 6 3.7055 -0.8196 1.7980 12 1 4.1336 0.1815 1.7466 13 7 4.2814 -1.6535 0.7346 14 6 5.6884 -1.3052 0.4962 15 6 6.2525 -2.1933 -0.6148 16 6 7.7178 -1.8301 -0.8635 17 6 8.2732 -2.7043 -1.9582 18 1 7.6439 -3.4446 -2.4296 19 6 9.5848 -2.5590 -2.3578 20 7 10.3513 -1.6579 -1.7832 21 14 10.2734 -3.6431 -3.7142 22 1 9.2159 -4.5695 -4.1925 23 1 10.7332 -2.7931 -4.8418 24 1 11.4184 -4.4283 -3.1872 25 1 -0.3634 0.5969 0.8365 26 1 -0.3633 0.4259 -0.9352 27 1 -0.3633 -1.0229 0.0987 28 1 2.0161 -2.7597 0.8982 29 1 0.5079 -2.0818 1.5568 30 1 1.4759 -3.7625 3.1012 31 1 1.4761 -2.1427 3.8385 32 1 3.8487 -3.4633 2.4445 33 1 3.6455 -3.2869 4.2038 34 1 3.5930 -0.8205 3.9501 35 1 5.1015 -1.4984 3.2925 36 1 4.1833 -2.6342 0.9510 37 1 5.7583 -0.2596 0.1967 38 1 6.2610 -1.4603 1.4107 39 1 6.1828 -3.2388 -0.3149 40 1 5.6800 -2.0386 -1.5294 41 1 7.7872 -0.7845 -1.1635 42 1 8.2906 -1.9844 0.0511 43 1 11.2739 -1.5555 -2.0647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182812816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -120.122295 kcal Electronic energy + Delta-G solvation = -22137.854777 eV Core-core repulsion = 18922.245352 eV Total energy + Delta-G solvation = -3215.609424 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37792 -37.78575 -36.81222 -36.70820 -35.05286 -33.00192 -32.21791 -30.35393 -30.02261 -27.62829 -24.45026 -23.97496 -23.39024 -21.93817 -20.17186 -19.46395 -18.53084 -17.92919 -17.00394 -16.83842 -16.70026 -16.52358 -16.00320 -15.74125 -15.21885 -14.95354 -14.57001 -14.24479 -13.92228 -13.84793 -13.80864 -13.66647 -13.29778 -13.03465 -12.99625 -12.84456 -12.78863 -12.74466 -12.48169 -12.38045 -12.24835 -12.07188 -11.69800 -11.58091 -11.41319 -11.32919 -11.19389 -11.02451 -10.75873 -10.56565 -9.34935 -8.20793 -6.31908 -0.75925 1.38641 1.40056 1.53801 2.07305 2.40768 2.90929 3.08121 3.12038 3.31111 3.60908 3.69210 3.97575 4.08380 4.14553 4.19425 4.24326 4.27728 4.36726 4.40026 4.47593 4.53340 4.67901 4.72590 4.87039 4.92171 4.95984 5.04431 5.09430 5.15453 5.21918 5.24247 5.27857 5.33795 5.50771 5.53670 5.73797 5.84746 5.98841 6.26324 6.47738 6.84444 7.37147 8.91603 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.003847 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.304994 B = 7275.936853 C = 7931.306924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.404 3.596 3 O -1.003 7.003 4 O -0.960 6.960 5 C -0.538 4.538 6 H 0.171 0.829 7 C -0.114 4.114 8 C -0.105 4.105 9 C -0.127 4.127 10 C -0.136 4.136 11 C 0.089 3.911 12 H 0.075 0.925 13 N -0.688 5.688 14 C 0.071 3.929 15 C -0.093 4.093 16 C 0.025 3.975 17 C -0.543 4.543 18 H 0.058 0.942 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.274 1.274 25 H 0.155 0.845 26 H 0.130 0.870 27 H 0.156 0.844 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.353 0.647 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.054 0.946 40 H 0.045 0.955 41 H -0.013 1.013 42 H -0.005 1.005 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.702 -0.496 13.786 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.593 3.407 3 O -1.001 7.001 4 O -0.957 6.957 5 C -0.650 4.650 6 H 0.189 0.811 7 C -0.152 4.152 8 C -0.143 4.143 9 C -0.165 4.165 10 C -0.176 4.176 11 C -0.022 4.022 12 H 0.093 0.907 13 N -0.323 5.323 14 C -0.058 4.058 15 C -0.131 4.131 16 C -0.012 4.012 17 C -0.581 4.581 18 H 0.076 0.924 19 C -0.199 4.199 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.199 1.199 25 H 0.174 0.826 26 H 0.149 0.851 27 H 0.174 0.826 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.175 0.825 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.005 0.995 42 H 0.013 0.987 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.182 0.293 12.567 28.145 hybrid contribution 1.072 -0.629 0.467 1.328 sum -24.110 -0.336 13.033 27.409 Atomic orbital electron populations 1.30206 1.22486 1.13884 1.13085 1.08073 0.79816 0.74229 0.78618 1.93502 1.81432 1.37538 1.87585 1.93569 1.79970 1.66677 1.55482 1.30044 1.02901 1.10049 1.22008 0.81142 1.21579 1.02026 0.91288 1.00347 1.21453 0.94668 1.01920 0.96284 1.21601 0.97050 0.95709 1.02139 1.22059 1.00677 0.98136 0.96686 1.21337 0.91490 0.97942 0.91479 0.90650 1.60666 1.17152 1.10225 1.44209 1.21840 0.87663 0.99074 0.97212 1.21366 0.95751 0.98388 0.97559 1.18976 0.92045 0.95003 0.95215 1.21713 0.96825 1.19561 1.19980 0.92377 1.26017 0.97487 0.97013 0.99425 1.70114 1.07692 1.35765 1.43895 0.85353 0.78346 0.78581 0.78476 1.18685 1.20348 1.19949 0.82626 0.85134 0.82583 0.90805 0.87170 0.90087 0.89802 0.92970 0.90583 0.89120 0.92877 0.82510 0.92985 0.94804 0.92720 0.93573 0.99475 0.98677 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.75 10.17 113.37 1.15 -4.60 16 2 S 2.40 52.45 4.76 -56.49 -0.27 52.18 16 3 O -1.00 -31.35 18.10 -127.37 -2.30 -33.65 16 4 O -0.96 -30.79 16.80 -127.37 -2.14 -32.93 16 5 C -0.54 -8.15 2.39 30.59 0.07 -8.08 16 6 H 0.17 1.18 8.14 -2.39 -0.02 1.16 16 7 C -0.11 -1.28 4.71 30.59 0.14 -1.14 16 8 C -0.10 -1.00 5.92 30.59 0.18 -0.82 16 9 C -0.13 -1.88 5.67 30.60 0.17 -1.71 16 10 C -0.14 -2.43 5.52 30.61 0.17 -2.26 16 11 C 0.09 2.02 2.29 44.93 0.10 2.12 16 12 H 0.08 1.95 7.80 -2.39 -0.02 1.94 16 13 N -0.69 -20.72 4.41 -491.51 -2.17 -22.89 16 14 C 0.07 2.70 5.48 86.31 0.47 3.18 16 15 C -0.09 -4.26 5.41 30.60 0.17 -4.09 16 16 C 0.03 1.44 4.97 29.85 0.15 1.58 16 17 C -0.54 -32.95 9.11 25.60 0.23 -32.71 16 18 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.93 -59.22 13.29 21.45 0.28 -58.94 16 21 Si 0.97 46.31 29.54 68.60 2.03 48.33 16 22 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.16 0.56 6.87 -2.39 -0.02 0.54 16 28 H 0.07 1.18 7.12 -2.39 -0.02 1.16 16 29 H 0.11 0.39 6.56 -2.39 -0.02 0.37 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.94 6.26 -2.39 -0.01 0.92 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.14 7.46 -2.39 -0.02 1.12 16 36 H 0.35 9.61 5.56 -89.69 -0.50 9.11 16 37 H 0.05 2.12 8.05 -2.39 -0.02 2.10 16 38 H 0.03 1.22 7.44 -2.39 -0.02 1.21 16 39 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 40 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 41 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 43 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -84.79 344.08 -0.61 -85.40 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.48 Total: 10.68 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 3.48 Total: -48.19 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.88 Total: -81.83 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -4.44 Total: -66.59 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: 52.45 SS G_CDS: -0.27 Total: 52.18 kcal Total: -84.79 -0.61 -85.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182812816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.721 kcal (2) G-P(sol) polarization free energy of solvation -84.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds