Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00004 * 2 1 4 4 O 1.20828 * 119.99950 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99908 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.24140 * 60.50555 * 5 3 2 7 7 C 1.50628 * 109.26811 * 301.00921 * 5 3 2 8 8 C 1.38726 * 118.42950 * 42.21109 * 7 5 3 9 9 C 1.38011 * 120.38080 * 179.80512 * 8 7 5 10 10 C 1.38268 * 119.86455 * 0.02562 * 9 8 7 11 11 C 1.38028 * 119.82740 * 0.07500 * 10 9 8 12 12 C 1.37835 * 121.84444 * 222.14219 * 7 5 3 13 13 C 1.50720 * 121.66007 * 0.55014 * 12 7 5 14 14 C 1.52882 * 109.96025 * 343.03238 * 13 12 7 15 15 N 1.46629 * 109.27001 * 180.02562 * 5 3 2 16 16 C 1.46906 * 110.99904 * 296.20770 * 15 5 3 17 17 C 1.53002 * 109.47053 * 169.99888 * 16 15 5 18 18 C 1.50696 * 109.46999 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00355 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99521 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00556 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47148 * 59.99955 * 22 20 18 24 24 H 1.48498 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46848 * 299.99842 * 22 20 18 26 26 H 1.08991 * 109.47280 * 299.99933 * 1 2 3 27 27 H 1.09007 * 109.47047 * 59.99952 * 1 2 3 28 28 H 1.09006 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.81200 * 359.83692 * 8 7 5 30 30 H 1.08001 * 120.07007 * 179.97438 * 9 8 7 31 31 H 1.08000 * 120.08146 * 180.09622 * 10 9 8 32 32 H 1.08003 * 119.82121 * 179.97438 * 11 10 9 33 33 H 1.09005 * 109.38811 * 103.18791 * 13 12 7 34 34 H 1.09004 * 109.38505 * 222.98302 * 13 12 7 35 35 H 1.09007 * 109.61262 * 290.69832 * 14 13 12 36 36 H 1.09002 * 109.63588 * 170.11620 * 14 13 12 37 37 H 1.08992 * 109.47459 * 289.99971 * 16 15 5 38 38 H 1.09004 * 109.47040 * 50.00122 * 16 15 5 39 39 H 1.09001 * 109.47142 * 300.00160 * 17 16 15 40 40 H 1.09004 * 109.47006 * 60.00213 * 17 16 15 41 41 H 0.96999 * 120.00022 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9512 0.7879 -0.8965 7 6 4.1015 0.5691 1.2178 8 6 3.5291 -0.6399 1.5854 9 6 3.9908 -1.3228 2.6923 10 6 5.0294 -0.7998 3.4403 11 6 5.5987 0.4041 3.0770 12 6 5.1355 1.0910 1.9650 13 6 5.7819 2.4058 1.6115 14 6 5.4347 2.7878 0.1724 15 7 3.9772 2.6824 0.0002 16 6 3.5427 3.3583 -1.2297 17 6 3.7638 4.8656 -1.0886 18 6 3.3187 5.5589 -2.3505 19 1 2.9178 4.9821 -3.1709 20 6 3.4232 6.9294 -2.4578 21 7 3.9119 7.6318 -1.4589 22 14 2.8709 7.7889 -4.0216 23 1 1.4286 7.5201 -4.2512 24 1 3.0867 9.2517 -3.8852 25 1 3.6589 7.2779 -5.1720 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.7178 -1.0494 1.0017 30 1 3.5412 -2.2635 2.9742 31 1 5.3944 -1.3320 4.3062 32 1 6.4096 0.8127 3.6616 33 1 5.4210 3.1801 2.2886 34 1 6.8637 2.3150 1.7093 35 1 5.9354 2.1083 -0.5174 36 1 5.7535 3.8119 -0.0218 37 1 4.1214 2.9837 -2.0740 38 1 2.4841 3.1605 -1.3984 39 1 3.1851 5.2403 -0.2443 40 1 4.8224 5.0634 -0.9199 41 1 3.9858 8.5960 -1.5345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267738966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = -47.313452 kcal Electronic energy + Delta-G solvation = -23408.641043 eV Core-core repulsion = 20060.744895 eV Total energy + Delta-G solvation = -3347.896147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92942 -39.39717 -37.41445 -35.98905 -33.47114 -32.90440 -31.83326 -29.36734 -29.12433 -27.81097 -25.60107 -24.06163 -23.13107 -22.45903 -20.94098 -20.30222 -19.28000 -17.65434 -16.81358 -16.67251 -16.25524 -15.80018 -15.40770 -15.29557 -14.60446 -14.34277 -13.97574 -13.77536 -13.44084 -13.35254 -13.25550 -12.61963 -12.40953 -12.19591 -12.11944 -12.00184 -11.71861 -11.49870 -11.06628 -10.99144 -10.90185 -10.62965 -10.54643 -10.41770 -10.20536 -9.64374 -9.30314 -9.08113 -8.79592 -8.54579 -8.27387 -7.87968 -5.94798 -3.96505 1.28979 1.41309 2.42778 2.69760 3.36671 3.40706 3.43379 3.77899 4.20167 4.53415 4.62719 4.77731 4.90093 4.97961 5.06762 5.18148 5.20395 5.25678 5.32126 5.41030 5.46998 5.51871 5.56237 5.67293 5.77659 5.96807 6.06545 6.16800 6.21193 6.36630 6.40588 6.44790 6.52226 6.55689 6.65817 6.99779 7.04589 7.36977 7.40946 7.78445 7.94556 8.00440 8.13299 8.48093 9.09688 9.66285 11.16689 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.004599 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.760931 B = 6086.786372 C = 7264.745203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.464 6.464 5 C 0.136 3.864 6 H 0.082 0.918 7 C -0.080 4.080 8 C -0.113 4.113 9 C -0.130 4.130 10 C -0.116 4.116 11 C -0.127 4.127 12 C -0.049 4.049 13 C -0.081 4.081 14 C 0.052 3.948 15 N -0.514 5.514 16 C 0.051 3.949 17 C 0.035 3.965 18 C -0.519 4.519 19 H 0.052 0.948 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.278 1.278 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.143 0.857 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.103 0.897 37 H 0.019 0.981 38 H 0.079 0.921 39 H 0.027 0.973 40 H 0.016 0.984 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -19.493 7.801 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.347 6.347 5 C 0.026 3.974 6 H 0.100 0.900 7 C -0.081 4.081 8 C -0.131 4.131 9 C -0.149 4.149 10 C -0.134 4.134 11 C -0.145 4.145 12 C -0.049 4.049 13 C -0.119 4.119 14 C -0.075 4.075 15 N -0.240 5.240 16 C -0.074 4.074 17 C -0.003 4.003 18 C -0.558 4.558 19 H 0.070 0.930 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.121 0.879 37 H 0.037 0.963 38 H 0.098 0.902 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.670 -18.739 8.243 20.483 hybrid contribution -0.195 0.174 -1.489 1.512 sum 0.474 -18.565 6.754 19.761 Atomic orbital electron populations 1.23238 0.76769 1.03262 1.02782 1.86469 1.23129 1.33691 1.84823 1.23392 0.91334 0.81463 0.73361 1.90732 1.66209 1.35630 1.42111 1.19950 0.87575 0.92626 0.97229 0.90039 1.19164 0.97266 0.95272 0.96362 1.21588 1.00024 0.94180 0.97265 1.21012 0.97737 1.00163 0.95943 1.21107 0.96659 0.96075 0.99587 1.21076 1.00848 0.95561 0.96997 1.19670 0.95066 0.95973 0.94232 1.20665 0.99400 0.93927 0.97865 1.22257 0.87040 1.03179 0.95057 1.62202 1.13088 1.07773 1.40933 1.22642 1.00334 0.98481 0.85980 1.19032 0.97009 0.86824 0.97407 1.21123 1.41934 0.91989 1.00786 0.92959 1.24967 0.95373 0.97514 0.96351 1.69963 1.45706 1.06539 1.31054 0.86665 0.79247 0.78417 0.83701 1.20262 1.21276 1.20333 0.91909 0.91837 0.88362 0.83996 0.86155 0.86248 0.85969 0.89254 0.90310 0.94652 0.87927 0.96260 0.90227 0.95434 0.96570 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.93 7.57 -39.26 -0.30 -5.23 16 3 C 0.46 7.94 6.70 36.01 0.24 8.18 16 4 O -0.46 -9.66 13.92 -18.75 -0.26 -9.93 16 5 C 0.14 2.24 2.28 -70.20 -0.16 2.08 16 6 H 0.08 1.24 8.13 -51.93 -0.42 0.81 16 7 C -0.08 -1.18 5.47 -104.62 -0.57 -1.75 16 8 C -0.11 -1.43 8.98 -39.48 -0.35 -1.79 16 9 C -0.13 -1.42 10.05 -39.65 -0.40 -1.82 16 10 C -0.12 -1.23 10.05 -39.65 -0.40 -1.63 16 11 C -0.13 -1.48 9.66 -39.50 -0.38 -1.86 16 12 C -0.05 -0.68 5.77 -104.60 -0.60 -1.29 16 13 C -0.08 -1.13 5.94 -27.93 -0.17 -1.29 16 14 C 0.05 0.86 5.44 -3.75 -0.02 0.84 16 15 N -0.51 -9.87 4.19 -229.55 -0.96 -10.83 16 16 C 0.05 1.15 4.49 -3.82 -0.02 1.13 16 17 C 0.03 0.93 4.95 -27.88 -0.14 0.79 16 18 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 22 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.14 1.69 5.25 -52.49 -0.28 1.42 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.54 8.05 -51.92 -0.42 0.12 16 36 H 0.10 1.87 6.04 -51.93 -0.31 1.55 16 37 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 38 H 0.08 1.88 5.55 -51.93 -0.29 1.59 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.02 0.44 6.34 -51.93 -0.33 0.11 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -33.35 331.26 -8.94 -42.29 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.81 Total: -1.05 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.31 Total: -10.78 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.23 Total: -37.37 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.56 Total: -15.16 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.35 -8.94 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267738966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.020 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds