Wall clock time and date at job start Tue Mar 31 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00004 * 2 1 4 4 O 1.20828 * 119.99950 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99908 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.24140 * 60.50555 * 5 3 2 7 7 C 1.50628 * 109.26811 * 301.00921 * 5 3 2 8 8 C 1.38726 * 118.42950 * 42.21109 * 7 5 3 9 9 C 1.38011 * 120.38080 * 179.80512 * 8 7 5 10 10 C 1.38268 * 119.86455 * 0.02562 * 9 8 7 11 11 C 1.38028 * 119.82740 * 0.07500 * 10 9 8 12 12 C 1.37835 * 121.84444 * 222.14219 * 7 5 3 13 13 C 1.50720 * 121.66007 * 0.55014 * 12 7 5 14 14 C 1.52882 * 109.96025 * 343.03238 * 13 12 7 15 15 N 1.46629 * 109.27001 * 180.02562 * 5 3 2 16 16 C 1.46906 * 110.99904 * 296.20770 * 15 5 3 17 17 C 1.53002 * 109.47053 * 169.99888 * 16 15 5 18 18 C 1.50696 * 109.46999 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00355 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99521 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00556 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47148 * 59.99955 * 22 20 18 24 24 H 1.48498 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46848 * 299.99842 * 22 20 18 26 26 H 1.08991 * 109.47280 * 299.99933 * 1 2 3 27 27 H 1.09007 * 109.47047 * 59.99952 * 1 2 3 28 28 H 1.09006 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.81200 * 359.83692 * 8 7 5 30 30 H 1.08001 * 120.07007 * 179.97438 * 9 8 7 31 31 H 1.08000 * 120.08146 * 180.09622 * 10 9 8 32 32 H 1.08003 * 119.82121 * 179.97438 * 11 10 9 33 33 H 1.09005 * 109.38811 * 103.18791 * 13 12 7 34 34 H 1.09004 * 109.38505 * 222.98302 * 13 12 7 35 35 H 1.09007 * 109.61262 * 290.69832 * 14 13 12 36 36 H 1.09002 * 109.63588 * 170.11620 * 14 13 12 37 37 H 1.08992 * 109.47459 * 289.99971 * 16 15 5 38 38 H 1.09004 * 109.47040 * 50.00122 * 16 15 5 39 39 H 1.09001 * 109.47142 * 300.00160 * 17 16 15 40 40 H 1.09004 * 109.47006 * 60.00213 * 17 16 15 41 41 H 0.96999 * 120.00022 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9512 0.7879 -0.8965 7 6 4.1015 0.5691 1.2178 8 6 3.5291 -0.6399 1.5854 9 6 3.9908 -1.3228 2.6923 10 6 5.0294 -0.7998 3.4403 11 6 5.5987 0.4041 3.0770 12 6 5.1355 1.0910 1.9650 13 6 5.7819 2.4058 1.6115 14 6 5.4347 2.7878 0.1724 15 7 3.9772 2.6824 0.0002 16 6 3.5427 3.3583 -1.2297 17 6 3.7638 4.8656 -1.0886 18 6 3.3187 5.5589 -2.3505 19 1 2.9178 4.9821 -3.1709 20 6 3.4232 6.9294 -2.4578 21 7 3.9119 7.6318 -1.4589 22 14 2.8709 7.7889 -4.0216 23 1 1.4286 7.5201 -4.2512 24 1 3.0867 9.2517 -3.8852 25 1 3.6589 7.2779 -5.1720 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.7178 -1.0494 1.0017 30 1 3.5412 -2.2635 2.9742 31 1 5.3944 -1.3320 4.3062 32 1 6.4096 0.8127 3.6616 33 1 5.4210 3.1801 2.2886 34 1 6.8637 2.3150 1.7093 35 1 5.9354 2.1083 -0.5174 36 1 5.7535 3.8119 -0.0218 37 1 4.1214 2.9837 -2.0740 38 1 2.4841 3.1605 -1.3984 39 1 3.1851 5.2403 -0.2443 40 1 4.8224 5.0634 -0.9199 41 1 3.9858 8.5960 -1.5345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267738966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:11 Heat of formation + Delta-G solvation = -67.600381 kcal Electronic energy + Delta-G solvation = -23409.520750 eV Core-core repulsion = 20060.744895 eV Total energy + Delta-G solvation = -3348.775855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.17412 -40.50811 -38.69120 -37.30980 -35.43607 -34.07954 -33.37317 -30.88372 -30.37901 -28.84006 -27.18580 -25.56609 -24.58386 -23.50299 -22.16309 -22.01497 -20.48652 -18.91921 -18.63050 -17.90683 -17.71690 -16.84434 -16.75226 -16.57391 -16.27617 -15.83600 -15.23679 -15.04970 -14.76591 -14.58559 -14.32261 -14.09308 -13.89899 -13.64602 -13.35921 -13.25105 -13.05108 -12.90856 -12.74074 -12.56837 -12.38748 -12.08255 -11.95073 -11.74379 -11.64613 -11.42464 -11.25072 -11.09162 -10.52562 -9.77613 -9.50702 -9.33112 -8.20675 -6.32023 0.33513 0.50449 1.10853 1.37851 1.42025 1.49736 1.55389 2.38701 2.82723 2.86214 3.12251 3.49764 3.67501 3.82314 3.96957 4.08699 4.20261 4.25664 4.30444 4.31988 4.35333 4.43350 4.48054 4.63626 4.68800 4.76565 4.83947 4.86252 4.98593 5.03152 5.13186 5.24267 5.27572 5.39617 5.56201 5.60263 5.65138 5.67362 5.77619 6.01920 6.02140 6.14870 6.27099 6.70822 6.82977 7.36214 8.91482 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.004599 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.760931 B = 6086.786372 C = 7264.745203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.468 3.532 4 O -0.513 6.513 5 C 0.135 3.865 6 H 0.094 0.906 7 C -0.103 4.103 8 C -0.120 4.120 9 C -0.126 4.126 10 C -0.111 4.111 11 C -0.128 4.128 12 C -0.070 4.070 13 C -0.074 4.074 14 C 0.051 3.949 15 N -0.533 5.533 16 C 0.071 3.929 17 C 0.046 3.954 18 C -0.546 4.546 19 H 0.056 0.944 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.967 3.033 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.263 1.263 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.064 0.936 39 H -0.016 1.016 40 H 0.003 0.997 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -21.989 8.162 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.311 3.689 4 O -0.400 6.400 5 C 0.026 3.974 6 H 0.111 0.889 7 C -0.104 4.104 8 C -0.138 4.138 9 C -0.144 4.144 10 C -0.129 4.129 11 C -0.146 4.146 12 C -0.070 4.070 13 C -0.111 4.111 14 C -0.076 4.076 15 N -0.258 5.258 16 C -0.056 4.056 17 C 0.009 3.991 18 C -0.585 4.585 19 H 0.074 0.926 20 C -0.194 4.194 21 N -0.569 5.569 22 Si 0.791 3.209 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.188 1.188 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.003 0.997 40 H 0.021 0.979 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.015 -21.282 8.611 22.981 hybrid contribution -0.324 0.841 -1.503 1.753 sum 0.691 -20.441 7.107 21.652 Atomic orbital electron populations 1.23587 0.74905 1.05996 1.02229 1.86467 1.24834 1.31549 1.83903 1.23615 0.91684 0.81660 0.71974 1.90714 1.67217 1.37347 1.44685 1.20011 0.87420 0.90872 0.99145 0.88933 1.19153 0.98508 0.96380 0.96330 1.21688 1.00254 0.93694 0.98194 1.21397 0.97383 1.00885 0.94757 1.21534 0.95785 0.95458 1.00075 1.21351 1.01266 0.95826 0.96132 1.19746 0.95588 0.96116 0.95529 1.20602 1.01243 0.93989 0.95252 1.22273 0.85654 1.02027 0.97603 1.62028 1.14783 1.10015 1.38996 1.22175 0.99628 0.95869 0.87886 1.18812 0.95179 0.89966 0.95181 1.21535 1.42444 0.92914 1.01589 0.92624 1.25942 0.95089 0.98254 1.00137 1.70103 1.46487 1.06992 1.33346 0.85487 0.78992 0.77233 0.79237 1.19597 1.20444 1.18812 0.92429 0.92563 0.83875 0.83594 0.83145 0.82946 0.83781 0.90745 0.87360 0.93185 0.90563 0.95601 0.91741 0.99726 0.97864 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.35 -9.27 7.57 -51.41 -0.39 -9.65 16 3 C 0.47 16.36 6.70 71.24 0.48 16.84 16 4 O -0.51 -22.43 13.92 21.96 0.31 -22.12 16 5 C 0.14 4.51 2.28 43.45 0.10 4.61 16 6 H 0.09 2.82 8.13 -2.39 -0.02 2.80 16 7 C -0.10 -2.95 5.47 -19.87 -0.11 -3.06 16 8 C -0.12 -2.82 8.98 22.33 0.20 -2.61 16 9 C -0.13 -2.29 10.05 22.22 0.22 -2.07 16 10 C -0.11 -1.89 10.05 22.23 0.22 -1.67 16 11 C -0.13 -2.61 9.66 22.32 0.22 -2.40 16 12 C -0.07 -1.85 5.77 -19.85 -0.11 -1.97 16 13 C -0.07 -2.04 5.94 29.81 0.18 -1.86 16 14 C 0.05 1.76 5.44 86.22 0.47 2.23 16 15 N -0.53 -21.40 4.19 -880.17 -3.69 -25.09 16 16 C 0.07 3.36 4.49 86.30 0.39 3.74 16 17 C 0.05 2.63 4.95 29.85 0.15 2.78 16 18 C -0.55 -32.97 9.11 25.60 0.23 -32.73 16 19 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 20 C 0.00 0.23 5.46 84.65 0.46 0.70 16 21 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 22 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 26 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 27 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 28 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.15 3.18 5.25 -2.91 -0.02 3.16 16 30 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 31 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.05 1.54 8.05 -2.38 -0.02 1.52 16 36 H 0.08 2.98 6.04 -2.39 -0.01 2.96 16 37 H 0.03 1.16 8.11 -2.39 -0.02 1.14 16 38 H 0.06 3.23 5.55 -2.38 -0.01 3.22 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.00 0.19 6.34 -2.38 -0.02 0.17 16 41 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -75.80 331.26 3.85 -71.95 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.02 Total: 11.00 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 4.29 Total: -15.76 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -3.40 Total: -83.29 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.08 Total: -31.77 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.80 3.85 -71.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267738966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.350 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds