Wall clock time and date at job start Tue Mar 31 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00291 * 2 1 4 4 O 1.20827 * 119.99878 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99974 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.27181 * 299.50782 * 5 3 2 7 7 C 1.50621 * 109.27193 * 58.98747 * 5 3 2 8 8 C 1.38733 * 118.42107 * 317.59689 * 7 5 3 9 9 C 1.38017 * 120.37837 * 180.20270 * 8 7 5 10 10 C 1.38261 * 119.86792 * 359.97438 * 9 8 7 11 11 C 1.38028 * 119.83014 * 359.91143 * 10 9 8 12 12 C 1.37836 * 121.85615 * 137.64067 * 7 5 3 13 13 C 1.50718 * 121.66452 * 359.71459 * 12 7 5 14 14 C 1.52906 * 109.94429 * 16.83669 * 13 12 7 15 15 N 1.46632 * 109.27130 * 180.02562 * 5 3 2 16 16 C 1.46897 * 111.00200 * 63.84664 * 15 5 3 17 17 C 1.53008 * 109.46841 * 56.95033 * 16 15 5 18 18 C 1.50697 * 109.47073 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99984 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00269 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99973 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99700 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47324 * 89.99438 * 22 20 18 24 24 H 1.48498 * 109.46937 * 209.99797 * 22 20 18 25 25 H 1.48507 * 109.46846 * 329.99340 * 22 20 18 26 26 H 1.09010 * 109.46600 * 60.00092 * 1 2 3 27 27 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47304 * 300.00626 * 1 2 3 29 29 H 1.08001 * 119.81152 * 0.17949 * 8 7 5 30 30 H 1.08000 * 120.06381 * 180.02562 * 9 8 7 31 31 H 1.08003 * 120.08176 * 179.97438 * 10 9 8 32 32 H 1.07998 * 119.83068 * 180.02562 * 11 10 9 33 33 H 1.08990 * 109.38993 * 256.69051 * 13 12 7 34 34 H 1.09004 * 109.39289 * 136.97755 * 13 12 7 35 35 H 1.09003 * 109.63310 * 69.28815 * 14 13 12 36 36 H 1.09003 * 109.62749 * 189.68305 * 14 13 12 37 37 H 1.08995 * 109.47559 * 176.94892 * 16 15 5 38 38 H 1.09001 * 109.47512 * 296.95934 * 16 15 5 39 39 H 1.08993 * 109.47263 * 299.99826 * 17 16 15 40 40 H 1.08993 * 109.46947 * 60.00190 * 17 16 15 41 41 H 0.97007 * 119.99905 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9517 0.7876 0.8963 7 6 4.1015 0.5689 -1.2176 8 6 3.5317 -0.6421 -1.5827 9 6 3.9935 -1.3254 -2.6894 10 6 5.0297 -0.8007 -3.4396 11 6 5.5962 0.4052 -3.0791 12 6 5.1326 1.0927 -1.9676 13 6 5.7798 2.4071 -1.6139 14 6 5.4347 2.7876 -0.1737 15 7 3.9772 2.6823 0.0011 16 6 3.5441 3.3568 1.2321 17 6 4.1101 2.6163 2.4455 18 6 3.6663 3.3086 3.7083 19 1 3.0425 4.1884 3.6512 20 6 4.0557 2.8182 4.9368 21 7 3.6688 3.4227 6.0388 22 14 5.1341 1.2961 5.0356 23 1 6.5630 1.7000 5.0215 24 1 4.8396 0.5616 6.2921 25 1 4.8567 0.4166 3.8715 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 2.7222 -1.0528 -0.9974 30 1 3.5459 -2.2676 -2.9693 31 1 5.3941 -1.3327 -4.3060 32 1 6.4053 0.8152 -3.6654 33 1 5.4179 3.1820 -2.2895 34 1 6.8613 2.3169 -1.7151 35 1 5.9360 2.1074 0.5149 36 1 5.7571 3.8103 0.0221 37 1 3.9082 4.3841 1.2310 38 1 2.4552 3.3572 1.2823 39 1 3.7460 1.5890 2.4467 40 1 5.1989 2.6158 2.3954 41 1 3.9431 3.0779 6.9030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267738969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:14 Heat of formation + Delta-G solvation = -45.001177 kcal Electronic energy + Delta-G solvation = -23858.272234 eV Core-core repulsion = 20510.476355 eV Total energy + Delta-G solvation = -3347.795880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.96347 -39.38732 -37.58472 -35.97772 -33.60259 -32.80917 -31.91988 -29.69816 -29.11625 -27.77753 -25.93859 -24.12171 -22.97527 -22.43526 -20.99615 -20.81619 -18.86808 -17.56955 -17.16951 -16.64141 -16.43934 -15.76948 -15.58201 -15.33137 -14.56586 -14.25593 -14.02895 -13.78559 -13.52963 -13.30328 -13.09508 -12.72495 -12.68497 -12.41352 -12.12111 -12.07336 -11.78197 -11.65069 -11.46098 -10.99373 -10.93827 -10.61403 -10.49153 -10.46111 -10.28096 -9.88149 -9.58058 -9.29280 -8.79700 -8.60798 -8.53867 -7.84255 -6.09190 -4.07700 1.29064 1.39548 2.48568 2.75927 3.24302 3.32518 3.33924 3.77047 4.19980 4.39055 4.63025 4.74542 4.90603 4.97889 5.09552 5.19470 5.21339 5.22867 5.28682 5.42115 5.47875 5.50247 5.57656 5.59677 5.76005 5.94601 5.98354 6.05175 6.14198 6.18460 6.36066 6.43831 6.50114 6.52202 6.62176 6.69812 6.98558 7.01690 7.13831 7.34288 7.47029 7.77453 8.03702 8.48658 8.96198 9.52597 11.04094 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.005845 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.938868 B = 4789.076962 C = 5424.796030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.361 6.361 3 C 0.475 3.525 4 O -0.476 6.476 5 C 0.129 3.871 6 H 0.100 0.900 7 C -0.077 4.077 8 C -0.113 4.113 9 C -0.128 4.128 10 C -0.118 4.118 11 C -0.127 4.127 12 C -0.054 4.054 13 C -0.080 4.080 14 C 0.052 3.948 15 N -0.518 5.518 16 C 0.052 3.948 17 C -0.047 4.047 18 C -0.516 4.516 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.900 5.900 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.268 1.268 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.011 0.989 40 H 0.013 0.987 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -9.711 -18.468 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.360 6.360 5 C 0.019 3.981 6 H 0.117 0.883 7 C -0.078 4.078 8 C -0.131 4.131 9 C -0.146 4.146 10 C -0.136 4.136 11 C -0.145 4.145 12 C -0.055 4.055 13 C -0.117 4.117 14 C -0.076 4.076 15 N -0.242 5.242 16 C -0.074 4.074 17 C -0.086 4.086 18 C -0.555 4.555 19 H 0.093 0.907 20 C -0.132 4.132 21 N -0.539 5.539 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.193 1.193 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.029 0.971 40 H 0.031 0.969 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.002 -9.146 -18.670 20.814 hybrid contribution 0.736 -1.192 1.009 1.727 sum 1.738 -10.338 -17.661 20.538 Atomic orbital electron populations 1.23247 0.76696 1.03367 1.02711 1.86465 1.23205 1.33548 1.84621 1.23228 0.91120 0.81412 0.72634 1.90626 1.66409 1.35824 1.43182 1.20029 0.87806 0.92430 0.97797 0.88323 1.19222 0.97208 0.95336 0.96038 1.21618 1.00137 0.94132 0.97189 1.21027 0.97645 1.00090 0.95831 1.21096 0.96736 0.96062 0.99670 1.21048 1.00756 0.95600 0.97050 1.19605 0.95307 0.96124 0.94433 1.20649 0.99482 0.94061 0.97498 1.22169 0.87736 1.02391 0.95261 1.62437 1.12835 1.09182 1.39734 1.22527 1.02331 0.97631 0.84950 1.20196 0.96100 0.96369 0.95891 1.20974 1.32344 1.13513 0.88641 0.90727 1.25017 0.95752 0.96736 0.95740 1.69909 1.45794 1.40488 0.97667 0.86835 0.81253 0.83905 0.77638 1.20185 1.21179 1.19316 0.92067 0.88324 0.91610 0.83891 0.86079 0.86241 0.86048 0.89647 0.90303 0.93679 0.89255 0.90575 0.88995 0.97083 0.96855 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.46 7.57 -39.25 -0.30 -5.76 16 3 C 0.48 8.59 6.81 36.00 0.25 8.83 16 4 O -0.48 -9.75 13.85 -18.75 -0.26 -10.01 16 5 C 0.13 2.27 1.95 -70.20 -0.14 2.13 16 6 H 0.10 1.86 5.98 -51.93 -0.31 1.55 16 7 C -0.08 -1.18 5.47 -104.62 -0.57 -1.75 16 8 C -0.11 -1.52 8.98 -39.48 -0.35 -1.88 16 9 C -0.13 -1.44 10.05 -39.65 -0.40 -1.84 16 10 C -0.12 -1.25 10.05 -39.65 -0.40 -1.65 16 11 C -0.13 -1.44 9.66 -39.50 -0.38 -1.82 16 12 C -0.05 -0.74 5.77 -104.60 -0.60 -1.34 16 13 C -0.08 -0.99 5.95 -27.92 -0.17 -1.16 16 14 C 0.05 0.80 4.89 -3.72 -0.02 0.78 16 15 N -0.52 -9.39 4.41 -229.53 -1.01 -10.40 16 16 C 0.05 1.09 4.87 -3.82 -0.02 1.08 16 17 C -0.05 -1.13 3.33 -27.88 -0.09 -1.22 16 18 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 19 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 20 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 21 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 22 Si 0.88 21.78 27.47 -169.99 -4.67 17.12 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 26 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.14 1.87 5.26 -52.49 -0.28 1.60 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.73 7.17 -51.93 -0.37 0.35 16 36 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 37 H 0.08 1.58 7.98 -51.93 -0.41 1.16 16 38 H 0.09 2.13 5.73 -51.93 -0.30 1.83 16 39 H 0.01 0.27 5.32 -51.93 -0.28 -0.01 16 40 H 0.01 0.31 6.34 -51.93 -0.33 -0.02 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -32.92 324.33 -8.49 -41.41 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.66 Total: 1.40 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.26 Total: -11.60 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.24 Total: -37.45 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.56 Total: -15.77 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.92 -8.49 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267738969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.587 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds