Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00291 * 2 1 4 4 O 1.20827 * 119.99878 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99974 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.27181 * 299.50782 * 5 3 2 7 7 C 1.50621 * 109.27193 * 58.98747 * 5 3 2 8 8 C 1.38733 * 118.42107 * 317.59689 * 7 5 3 9 9 C 1.38017 * 120.37837 * 180.20270 * 8 7 5 10 10 C 1.38261 * 119.86792 * 359.97438 * 9 8 7 11 11 C 1.38028 * 119.83014 * 359.91143 * 10 9 8 12 12 C 1.37836 * 121.85615 * 137.64067 * 7 5 3 13 13 C 1.50718 * 121.66452 * 359.71459 * 12 7 5 14 14 C 1.52906 * 109.94429 * 16.83669 * 13 12 7 15 15 N 1.46632 * 109.27130 * 180.02562 * 5 3 2 16 16 C 1.46897 * 111.00200 * 63.84664 * 15 5 3 17 17 C 1.53008 * 109.46841 * 56.95033 * 16 15 5 18 18 C 1.50697 * 109.47073 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99984 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00269 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99973 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99700 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47324 * 89.99438 * 22 20 18 24 24 H 1.48498 * 109.46937 * 209.99797 * 22 20 18 25 25 H 1.48507 * 109.46846 * 329.99340 * 22 20 18 26 26 H 1.09010 * 109.46600 * 60.00092 * 1 2 3 27 27 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47304 * 300.00626 * 1 2 3 29 29 H 1.08001 * 119.81152 * 0.17949 * 8 7 5 30 30 H 1.08000 * 120.06381 * 180.02562 * 9 8 7 31 31 H 1.08003 * 120.08176 * 179.97438 * 10 9 8 32 32 H 1.07998 * 119.83068 * 180.02562 * 11 10 9 33 33 H 1.08990 * 109.38993 * 256.69051 * 13 12 7 34 34 H 1.09004 * 109.39289 * 136.97755 * 13 12 7 35 35 H 1.09003 * 109.63310 * 69.28815 * 14 13 12 36 36 H 1.09003 * 109.62749 * 189.68305 * 14 13 12 37 37 H 1.08995 * 109.47559 * 176.94892 * 16 15 5 38 38 H 1.09001 * 109.47512 * 296.95934 * 16 15 5 39 39 H 1.08993 * 109.47263 * 299.99826 * 17 16 15 40 40 H 1.08993 * 109.46947 * 60.00190 * 17 16 15 41 41 H 0.97007 * 119.99905 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9517 0.7876 0.8963 7 6 4.1015 0.5689 -1.2176 8 6 3.5317 -0.6421 -1.5827 9 6 3.9935 -1.3254 -2.6894 10 6 5.0297 -0.8007 -3.4396 11 6 5.5962 0.4052 -3.0791 12 6 5.1326 1.0927 -1.9676 13 6 5.7798 2.4071 -1.6139 14 6 5.4347 2.7876 -0.1737 15 7 3.9772 2.6823 0.0011 16 6 3.5441 3.3568 1.2321 17 6 4.1101 2.6163 2.4455 18 6 3.6663 3.3086 3.7083 19 1 3.0425 4.1884 3.6512 20 6 4.0557 2.8182 4.9368 21 7 3.6688 3.4227 6.0388 22 14 5.1341 1.2961 5.0356 23 1 6.5630 1.7000 5.0215 24 1 4.8396 0.5616 6.2921 25 1 4.8567 0.4166 3.8715 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 2.7222 -1.0528 -0.9974 30 1 3.5459 -2.2676 -2.9693 31 1 5.3941 -1.3327 -4.3060 32 1 6.4053 0.8152 -3.6654 33 1 5.4179 3.1820 -2.2895 34 1 6.8613 2.3169 -1.7151 35 1 5.9360 2.1074 0.5149 36 1 5.7571 3.8103 0.0221 37 1 3.9082 4.3841 1.2310 38 1 2.4552 3.3572 1.2823 39 1 3.7460 1.5890 2.4467 40 1 5.1989 2.6158 2.3954 41 1 3.9431 3.0779 6.9030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267738969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = -65.711510 kcal Electronic energy + Delta-G solvation = -23859.170302 eV Core-core repulsion = 20510.476355 eV Total energy + Delta-G solvation = -3348.693947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.23102 -40.51800 -38.84441 -37.32981 -35.37769 -34.13395 -33.39338 -31.21827 -30.29349 -28.86570 -27.38551 -25.57961 -24.33211 -23.53808 -22.50268 -22.07632 -20.13416 -19.17753 -18.84495 -18.01967 -17.68932 -16.87431 -16.73271 -16.65317 -16.18965 -15.68714 -15.31199 -15.12655 -14.81831 -14.69812 -14.36819 -14.21680 -14.03755 -13.76393 -13.38503 -13.19901 -13.06582 -13.01607 -12.73559 -12.62690 -12.37672 -12.02478 -11.96451 -11.75891 -11.67165 -11.56529 -11.46960 -11.16494 -10.82101 -9.77529 -9.49768 -9.30448 -8.36222 -6.41355 0.33933 0.50278 1.10226 1.27124 1.29313 1.40069 1.56907 2.27821 2.82229 2.85885 2.97507 3.49850 3.67998 3.83511 3.99230 4.08629 4.19053 4.25568 4.29412 4.32838 4.34649 4.38809 4.47916 4.62541 4.66132 4.68929 4.76465 4.84113 4.88233 4.98261 5.13272 5.19325 5.22534 5.27195 5.37052 5.44717 5.57301 5.64810 5.67206 5.88069 5.98779 6.13705 6.23570 6.65749 6.68503 7.22826 8.80581 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.005845 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.938868 B = 4789.076962 C = 5424.796030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.512 6.512 5 C 0.129 3.871 6 H 0.081 0.919 7 C -0.105 4.105 8 C -0.127 4.127 9 C -0.127 4.127 10 C -0.111 4.111 11 C -0.125 4.125 12 C -0.070 4.070 13 C -0.072 4.072 14 C 0.045 3.955 15 N -0.519 5.519 16 C 0.066 3.934 17 C -0.034 4.034 18 C -0.531 4.531 19 H 0.032 0.968 20 C 0.011 3.989 21 N -0.946 5.946 22 Si 0.946 3.054 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.254 1.254 26 H 0.065 0.935 27 H 0.141 0.859 28 H 0.051 0.949 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.037 0.963 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.009 0.991 40 H 0.025 0.975 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -12.382 -21.185 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.399 6.399 5 C 0.019 3.981 6 H 0.098 0.902 7 C -0.105 4.105 8 C -0.145 4.145 9 C -0.145 4.145 10 C -0.129 4.129 11 C -0.143 4.143 12 C -0.071 4.071 13 C -0.109 4.109 14 C -0.082 4.082 15 N -0.242 5.242 16 C -0.062 4.062 17 C -0.072 4.072 18 C -0.569 4.569 19 H 0.050 0.950 20 C -0.187 4.187 21 N -0.586 5.586 22 Si 0.769 3.231 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.178 1.178 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.023 -11.834 -21.413 24.652 hybrid contribution 0.011 -0.361 1.801 1.837 sum 3.034 -12.195 -19.612 23.293 Atomic orbital electron populations 1.23588 0.74846 1.05989 1.02293 1.86471 1.24992 1.31944 1.83883 1.23535 0.91639 0.81664 0.71715 1.90605 1.67198 1.37031 1.45055 1.20034 0.87543 0.91782 0.98731 0.90226 1.19185 0.98948 0.96379 0.96037 1.21685 1.00459 0.94014 0.98297 1.21367 0.97625 1.00770 0.94752 1.21542 0.95641 0.95662 1.00047 1.21381 1.01119 0.95600 0.96169 1.19821 0.95208 0.96774 0.95268 1.20646 1.01288 0.93861 0.95055 1.22351 0.85636 1.02678 0.97486 1.62410 1.14882 1.09863 1.37092 1.22184 1.00674 0.97672 0.85630 1.20045 0.96547 0.95855 0.94789 1.21262 1.31860 1.12710 0.91108 0.94986 1.25966 0.97292 1.00368 0.95070 1.70058 1.47464 1.42609 0.98486 0.85728 0.79619 0.79524 0.78263 1.18468 1.20455 1.17814 0.91625 0.84138 0.92974 0.84324 0.83465 0.82873 0.83180 0.89098 0.87244 0.94485 0.88694 0.90765 0.91539 0.97326 0.95704 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -10.82 7.57 -51.38 -0.39 -11.21 16 3 C 0.47 17.55 6.81 71.23 0.49 18.04 16 4 O -0.51 -21.96 13.85 21.96 0.30 -21.65 16 5 C 0.13 4.59 1.95 43.45 0.08 4.67 16 6 H 0.08 3.07 5.98 -2.38 -0.01 3.06 16 7 C -0.10 -3.08 5.47 -19.87 -0.11 -3.19 16 8 C -0.13 -3.21 8.98 22.34 0.20 -3.01 16 9 C -0.13 -2.44 10.05 22.22 0.22 -2.21 16 10 C -0.11 -1.85 10.05 22.23 0.22 -1.63 16 11 C -0.12 -2.33 9.66 22.33 0.22 -2.11 16 12 C -0.07 -1.74 5.77 -19.85 -0.11 -1.86 16 13 C -0.07 -1.61 5.95 29.82 0.18 -1.43 16 14 C 0.05 1.35 4.89 86.22 0.42 1.78 16 15 N -0.52 -19.08 4.41 -880.09 -3.88 -22.96 16 16 C 0.07 2.90 4.87 86.31 0.42 3.33 16 17 C -0.03 -1.65 3.33 29.85 0.10 -1.55 16 18 C -0.53 -31.77 9.66 25.60 0.25 -31.52 16 19 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 20 C 0.01 0.63 5.47 84.66 0.46 1.09 16 21 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 22 Si 0.95 44.97 27.47 68.60 1.88 46.86 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 25 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 26 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 27 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 29 H 0.14 3.50 5.26 -2.91 -0.02 3.49 16 30 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 1.16 7.17 -2.39 -0.02 1.14 16 36 H 0.09 2.66 7.92 -2.39 -0.02 2.64 16 37 H 0.07 3.23 7.98 -2.39 -0.02 3.21 16 38 H 0.07 3.28 5.73 -2.39 -0.01 3.27 16 39 H 0.01 0.43 5.32 -2.39 -0.01 0.41 16 40 H 0.02 1.16 6.34 -2.39 -0.02 1.14 16 41 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -74.79 324.33 3.43 -71.36 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.98 Total: 15.39 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.24 Total: -17.81 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -3.58 Total: -82.94 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.08 Total: -32.86 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -74.79 3.43 -71.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267738969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.650 kcal (2) G-P(sol) polarization free energy of solvation -74.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds