Wall clock time and date at job start Tue Mar 31 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34716 * 116.99829 * 2 1 4 4 O 1.21471 * 120.00171 * 0.02562 * 3 2 1 5 5 C 1.47727 * 119.99491 * 180.02562 * 3 2 1 6 6 C 1.39648 * 120.22860 * 359.97438 * 5 3 2 7 7 C 1.37725 * 119.66953 * 180.14664 * 6 5 3 8 8 C 1.38855 * 120.55898 * 359.94749 * 7 6 5 9 9 C 1.38010 * 120.08658 * 359.82753 * 8 7 6 10 10 C 1.38465 * 119.86858 * 0.30909 * 9 8 7 11 11 C 1.50646 * 121.83341 * 180.60310 * 9 8 7 12 12 N 1.46617 * 110.51753 * 342.28877 * 11 9 8 13 13 C 1.46904 * 111.00044 * 175.95990 * 12 11 9 14 14 C 1.52996 * 109.47226 * 66.98853 * 13 12 11 15 15 C 1.50695 * 109.47247 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00066 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00126 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99858 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46942 * 60.00092 * 19 17 15 21 21 H 1.48498 * 109.46702 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47003 * 299.99811 * 19 17 15 23 23 C 1.47158 * 110.26670 * 52.52843 * 12 11 9 24 24 C 1.50767 * 118.32729 * 179.61597 * 8 7 6 25 25 H 1.09000 * 109.47600 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47346 * 300.00007 * 1 2 3 27 27 H 1.09003 * 109.47569 * 59.99839 * 1 2 3 28 28 H 1.07998 * 120.16470 * 0.15646 * 6 5 3 29 29 H 1.07994 * 119.71868 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.86470 * 179.50956 * 10 9 8 31 31 H 1.09007 * 109.26966 * 102.55439 * 11 9 8 32 32 H 1.09000 * 109.26688 * 222.02092 * 11 9 8 33 33 H 1.09000 * 109.47076 * 186.99353 * 13 12 11 34 34 H 1.09005 * 109.46742 * 306.99150 * 13 12 11 35 35 H 1.09000 * 109.47501 * 300.00239 * 14 13 12 36 36 H 1.09004 * 109.47234 * 59.99961 * 14 13 12 37 37 H 0.97005 * 119.99887 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.63352 * 169.01182 * 23 12 11 39 39 H 1.09003 * 109.63166 * 48.41832 * 23 12 11 40 40 H 1.09000 * 109.39408 * 283.10285 * 24 8 7 41 41 H 1.09003 * 109.39393 * 42.80774 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3039 0.1094 -0.0006 7 6 5.6785 0.1948 0.0020 8 6 6.3090 1.4320 0.0034 9 6 5.5592 2.5906 -0.0013 10 6 4.1765 2.5172 -0.0009 11 6 6.2019 3.9530 -0.0134 12 7 7.6060 3.8625 0.3989 13 6 8.2693 5.1694 0.2992 14 6 7.6691 6.1261 1.3313 15 6 8.3491 7.4670 1.2286 16 1 9.1315 7.6213 0.5002 17 6 7.9732 8.4965 2.0652 18 7 7.0208 8.3084 2.9524 19 14 8.8167 10.1584 1.9382 20 1 8.6162 10.7124 0.5751 21 1 8.2348 11.0866 2.9408 22 1 10.2698 9.9972 2.1984 23 6 8.3095 2.8512 -0.4062 24 6 7.8162 1.4668 0.0151 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.8202 -0.8562 -0.0027 29 1 6.2710 -0.7081 0.0024 30 1 3.5897 3.4239 0.0034 31 1 6.1488 4.3669 -1.0204 32 1 5.6671 4.6092 0.6733 33 1 9.3359 5.0511 0.4904 34 1 8.1225 5.5759 -0.7015 35 1 6.6026 6.2444 1.1401 36 1 7.8158 5.7196 2.3320 37 1 6.7561 9.0329 3.5407 38 1 9.3829 2.9263 -0.2319 39 1 8.0951 3.0105 -1.4630 40 1 8.1756 1.2450 1.0199 41 1 8.2009 0.7191 -0.6786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271300208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:44 Heat of formation + Delta-G solvation = -84.599582 kcal Electronic energy + Delta-G solvation = -22212.664425 eV Core-core repulsion = 18863.151429 eV Total energy + Delta-G solvation = -3349.512995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77011 -40.80884 -38.40862 -37.53098 -35.48478 -34.10923 -33.07267 -31.52411 -30.14542 -28.71433 -27.07552 -25.73652 -24.74853 -23.38434 -22.41795 -22.12616 -20.53051 -18.81896 -18.53384 -18.16313 -17.44158 -16.98929 -16.63367 -16.38271 -16.28021 -15.60788 -15.29617 -15.15576 -14.85488 -14.52069 -14.39127 -14.24501 -13.90680 -13.73344 -13.38030 -13.16619 -13.12339 -12.92807 -12.80211 -12.48437 -12.44739 -12.01713 -11.92382 -11.86522 -11.81963 -11.54037 -11.31587 -11.17128 -10.54941 -9.93562 -9.71069 -9.22371 -8.20139 -6.32040 -0.37847 0.30309 1.39633 1.41405 1.43164 1.51031 1.61254 2.39796 2.68006 2.99997 3.13228 3.57892 3.65721 3.79347 3.88970 4.09231 4.21497 4.27322 4.31072 4.31660 4.39701 4.44094 4.45672 4.64576 4.66805 4.71155 4.75364 4.88114 4.91685 4.95758 5.05771 5.14289 5.21385 5.23974 5.36024 5.43162 5.50946 5.65582 5.78246 5.85270 6.06854 6.23968 6.30695 6.60465 6.85590 7.37301 8.91811 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.003366 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.991594 B = 8315.602611 C = 9576.410894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.512 3.488 4 O -0.543 6.543 5 C -0.149 4.149 6 C -0.054 4.054 7 C -0.123 4.123 8 C -0.033 4.033 9 C -0.099 4.099 10 C -0.065 4.065 11 C 0.097 3.903 12 N -0.545 5.545 13 C 0.079 3.921 14 C 0.035 3.965 15 C -0.545 4.545 16 H 0.063 0.937 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.264 1.264 23 C 0.043 3.957 24 C -0.075 4.075 25 H 0.141 0.859 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.116 0.884 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.023 0.977 35 H -0.012 1.012 36 H -0.008 1.008 37 H 0.263 0.737 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -23.007 -8.773 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.359 3.641 4 O -0.435 6.435 5 C -0.150 4.150 6 C -0.072 4.072 7 C -0.140 4.140 8 C -0.034 4.034 9 C -0.099 4.099 10 C -0.084 4.084 11 C -0.031 4.031 12 N -0.269 5.269 13 C -0.048 4.048 14 C -0.002 4.002 15 C -0.583 4.583 16 H 0.081 0.919 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.188 1.188 23 C -0.084 4.084 24 C -0.112 4.112 25 H 0.159 0.841 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.183 0.817 29 H 0.190 0.810 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.007 0.993 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.282 -22.800 -8.147 24.781 hybrid contribution -0.478 2.018 -0.455 2.123 sum -5.760 -20.783 -8.602 23.218 Atomic orbital electron populations 1.23618 0.74253 1.06114 1.02496 1.86516 1.25220 1.31098 1.83830 1.21415 0.89443 0.81557 0.71707 1.90830 1.67600 1.37372 1.47718 1.18984 0.88762 0.95350 1.11923 1.21654 0.94015 0.97717 0.93779 1.21477 0.94240 0.97753 1.00575 1.20272 0.97239 0.92143 0.93731 1.19561 0.92612 0.95180 1.02573 1.21091 0.94023 0.97189 0.96093 1.20805 0.89976 0.93671 0.98613 1.62299 1.01471 1.08146 1.55023 1.22035 0.98153 0.87328 0.97303 1.18916 0.94599 0.92920 0.93801 1.21610 1.20357 0.97410 1.18921 0.91861 1.26003 0.95758 1.03333 0.94759 1.70120 1.30941 1.34101 1.22144 0.85472 0.78983 0.78313 0.78096 1.19187 1.21005 1.18842 1.22335 0.99420 0.91744 0.94914 1.20745 0.89278 0.96880 1.04249 0.84133 0.92232 0.91985 0.81673 0.80990 0.86582 0.93972 0.91930 0.90716 0.95915 0.99335 0.98997 0.92820 0.88888 0.94305 0.88760 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -7.28 9.83 -56.26 -0.55 -7.83 16 3 C 0.51 14.09 7.90 70.33 0.56 14.64 16 4 O -0.54 -18.62 16.13 19.93 0.32 -18.30 16 5 C -0.15 -3.93 5.87 -20.15 -0.12 -4.05 16 6 C -0.05 -1.02 9.62 22.49 0.22 -0.81 16 7 C -0.12 -2.13 9.63 22.30 0.21 -1.91 16 8 C -0.03 -0.79 5.78 -19.75 -0.11 -0.90 16 9 C -0.10 -3.02 5.79 -19.88 -0.12 -3.14 16 10 C -0.07 -2.02 9.20 22.60 0.21 -1.81 16 11 C 0.10 3.55 4.90 85.59 0.42 3.97 16 12 N -0.55 -19.72 4.68 -901.18 -4.21 -23.94 16 13 C 0.08 3.34 4.89 86.30 0.42 3.76 16 14 C 0.04 1.91 4.91 29.85 0.15 2.06 16 15 C -0.54 -31.47 9.11 25.60 0.23 -31.23 16 16 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 17 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 18 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 19 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.04 1.12 5.57 86.22 0.48 1.60 16 24 C -0.07 -1.46 5.94 29.83 0.18 -1.29 16 25 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.17 2.14 7.62 -2.91 -0.02 2.11 16 29 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.12 3.97 7.64 -2.91 -0.02 3.94 16 31 H 0.04 1.52 8.07 -2.38 -0.02 1.50 16 32 H 0.06 2.69 6.65 -2.39 -0.02 2.68 16 33 H 0.07 2.98 7.89 -2.39 -0.02 2.96 16 34 H 0.02 0.95 8.06 -2.38 -0.02 0.93 16 35 H -0.01 -0.69 6.66 -2.39 -0.02 -0.71 16 36 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 37 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 38 H 0.09 2.15 7.85 -2.39 -0.02 2.14 16 39 H 0.04 0.97 8.05 -2.39 -0.02 0.95 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -74.39 341.35 3.27 -71.13 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.02 Total: 7.28 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.39 Total: -17.09 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.93 Total: -82.09 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.23 Total: -26.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -74.39 3.27 -71.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271300208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.473 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds