Wall clock time and date at job start Tue Mar 31 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34705 * 117.00099 * 2 1 4 4 O 1.21470 * 119.99952 * 359.97438 * 3 2 1 5 5 C 1.47722 * 120.00367 * 179.97438 * 3 2 1 6 6 C 1.39654 * 120.14590 * 5.47804 * 5 3 2 7 7 C 1.37926 * 119.84853 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.14858 * 359.97438 * 7 6 5 9 9 C 1.38354 * 120.30499 * 0.02562 * 8 7 6 10 10 C 1.37965 * 120.14835 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.07640 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47344 * 97.00760 * 11 10 9 13 13 N 1.46498 * 109.47520 * 179.97438 * 12 11 10 14 14 C 1.36935 * 120.00566 * 270.00518 * 13 12 11 15 15 H 1.07994 * 120.00329 * 140.76502 * 14 13 12 16 16 C 1.38817 * 119.99252 * 320.76393 * 14 13 12 17 17 N 1.31614 * 120.00656 * 341.03440 * 16 14 13 18 18 Si 1.86806 * 119.99432 * 161.02934 * 16 14 13 19 19 H 1.48496 * 109.47048 * 60.00479 * 18 16 14 20 20 H 1.48505 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47466 * 300.00041 * 18 16 14 22 22 C 1.46499 * 119.99794 * 90.00233 * 13 12 11 23 23 C 1.52998 * 117.49883 * 192.91235 * 22 13 12 24 24 C 1.52993 * 117.50123 * 124.29033 * 22 13 12 25 25 H 1.08991 * 109.47467 * 300.00315 * 1 2 3 26 26 H 1.09001 * 109.46871 * 60.00329 * 1 2 3 27 27 H 1.09001 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.07636 * 0.28728 * 6 5 3 29 29 H 1.07996 * 119.92644 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.85019 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.92631 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.47378 * 217.00884 * 11 10 9 33 33 H 1.09001 * 109.47118 * 337.01068 * 11 10 9 34 34 H 1.09003 * 109.47411 * 300.00662 * 12 11 10 35 35 H 1.09008 * 109.47096 * 59.99966 * 12 11 10 36 36 H 0.97003 * 120.00421 * 185.03376 * 17 16 14 37 37 H 1.09009 * 115.55228 * 338.61876 * 22 13 12 38 38 H 1.08999 * 117.50146 * 359.97438 * 23 22 13 39 39 H 1.09006 * 117.49839 * 145.01843 * 23 22 13 40 40 H 1.09005 * 117.50347 * 214.97780 * 24 22 13 41 41 H 1.09002 * 117.50240 * 359.97435 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3022 0.1138 -0.1142 7 6 5.6792 0.1931 -0.1124 8 6 6.3044 1.4224 0.0022 9 6 5.5543 2.5793 0.1162 10 6 4.1761 2.5143 0.1158 11 6 3.3606 3.7755 0.2395 12 6 2.9306 4.2434 -1.1523 13 7 2.1373 5.4691 -1.0320 14 6 0.7776 5.3935 -0.8882 15 1 0.2669 6.0698 -0.2188 16 6 0.0558 4.4474 -1.6029 17 7 0.5830 3.8855 -2.6700 18 14 -1.6640 3.9715 -1.0500 19 1 -2.5374 5.1724 -1.0609 20 1 -2.2165 2.9499 -1.9755 21 1 -1.6054 3.4144 0.3252 22 6 2.7986 6.7759 -1.0655 23 6 1.9780 7.9942 -0.6374 24 6 2.3207 7.7829 -2.1134 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8155 -0.8457 -0.2083 29 1 6.2708 -0.7061 -0.2007 30 1 7.3830 1.4789 0.0034 31 1 6.0486 3.5354 0.2049 32 1 2.4765 3.5786 0.8459 33 1 3.9612 4.5515 0.7142 34 1 3.8147 4.4404 -1.7587 35 1 2.3300 3.4675 -1.6270 36 1 0.0529 3.2796 -3.2111 37 1 3.8605 6.7720 -0.8188 38 1 0.9460 7.8235 -0.3312 39 1 2.4999 8.7920 -0.1088 40 1 3.0679 8.4418 -2.5560 41 1 1.5144 7.4731 -2.7783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274777202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:55 Heat of formation + Delta-G solvation = -1.440935 kcal Electronic energy + Delta-G solvation = -23888.045183 eV Core-core repulsion = 20542.138217 eV Total energy + Delta-G solvation = -3345.906966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19582 -38.49107 -36.90343 -35.88701 -33.80126 -32.27719 -31.21226 -30.23996 -27.74374 -27.03199 -24.46869 -23.53512 -22.31330 -21.29873 -21.02240 -20.05290 -19.53550 -17.47767 -16.37796 -16.19629 -15.77282 -15.51063 -15.26301 -14.84573 -14.46075 -14.26164 -13.75630 -13.24512 -13.13576 -12.95488 -12.41777 -12.18947 -12.17917 -11.78991 -11.77728 -11.49140 -11.29340 -10.89827 -10.75450 -10.65194 -10.53950 -10.32584 -10.08916 -9.94179 -9.62239 -9.50381 -9.16548 -9.13892 -8.77294 -8.42858 -8.26829 -6.26615 -5.65355 -3.21941 1.07142 1.60226 3.08507 3.14676 3.44062 3.45056 3.53291 4.07817 4.57995 5.00016 5.05597 5.09419 5.13819 5.22287 5.43264 5.50082 5.54721 5.55912 5.61171 5.70666 5.85370 5.99594 6.02883 6.17685 6.23302 6.26270 6.39393 6.51580 6.58222 6.61211 6.66762 6.70163 6.78822 6.83858 6.92419 7.09024 7.15460 7.34519 7.48556 7.88689 7.99258 8.42528 8.69586 9.33415 9.96509 10.52115 11.36036 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.007775 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.121019 B = 3600.258175 C = 5348.973068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.368 6.368 3 C 0.477 3.523 4 O -0.434 6.434 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.153 4.153 8 C -0.088 4.088 9 C -0.137 4.137 10 C 0.002 3.998 11 C -0.114 4.114 12 C 0.165 3.835 13 N -0.544 5.544 14 C -0.260 4.260 15 H 0.057 0.943 16 C 0.043 3.957 17 N -0.884 5.884 18 Si 0.893 3.107 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.278 1.278 22 C 0.124 3.876 23 C -0.205 4.205 24 C -0.220 4.220 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.016 0.984 35 H 0.109 0.891 36 H 0.251 0.749 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.178 -7.664 5.243 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.286 6.286 3 C 0.319 3.681 4 O -0.317 6.317 5 C -0.121 4.121 6 C -0.083 4.083 7 C -0.171 4.171 8 C -0.107 4.107 9 C -0.155 4.155 10 C 0.001 3.999 11 C -0.153 4.153 12 C 0.039 3.961 13 N -0.259 5.259 14 C -0.389 4.389 15 H 0.074 0.926 16 C -0.158 4.158 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.214 1.214 20 H -0.220 1.220 21 H -0.205 1.205 22 C 0.015 3.985 23 C -0.244 4.244 24 C -0.261 4.261 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.856 -7.550 5.145 12.049 hybrid contribution -1.112 -0.186 0.143 1.137 sum 6.744 -7.736 5.287 11.545 Atomic orbital electron populations 1.23153 0.76736 1.02704 1.02815 1.86455 1.22893 1.33684 1.85585 1.21286 0.89236 0.81863 0.75671 1.91103 1.65914 1.33928 1.40771 1.18993 0.89382 0.94344 1.09425 1.21384 0.93868 0.97690 0.95405 1.20982 0.94290 0.97802 1.04059 1.21317 0.99762 0.92626 0.96947 1.21031 0.92924 0.98663 1.02910 1.20348 0.93821 0.94626 0.91097 1.21747 0.98798 0.90847 1.03946 1.20891 0.93497 0.91189 0.90505 1.43319 1.03096 0.97601 1.81843 1.18768 0.82348 1.17778 1.20051 0.92554 1.25006 0.96961 0.99432 0.94422 1.69851 1.36056 1.32438 1.14242 0.86534 0.84639 0.77918 0.78537 1.21403 1.21980 1.20458 1.21189 0.93559 0.83931 0.99848 1.23057 1.02344 1.01065 0.97918 1.23278 1.04428 1.06186 0.92202 0.92194 0.91868 0.88763 0.85126 0.85913 0.86021 0.85505 0.88416 0.93326 0.96592 0.87309 0.93843 0.89620 0.88781 0.91106 0.91483 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.56 101.05 1.07 1.68 16 2 O -0.37 -6.36 9.83 -40.51 -0.40 -6.76 16 3 C 0.48 9.43 7.80 34.61 0.27 9.70 16 4 O -0.43 -10.08 10.66 -19.24 -0.21 -10.29 16 5 C -0.12 -2.13 5.87 -104.98 -0.62 -2.74 16 6 C -0.07 -0.94 9.62 -39.17 -0.38 -1.31 16 7 C -0.15 -1.87 10.03 -39.64 -0.40 -2.27 16 8 C -0.09 -1.09 10.04 -39.48 -0.40 -1.48 16 9 C -0.14 -2.01 9.66 -39.64 -0.38 -2.39 16 10 C 0.00 0.04 5.17 -104.21 -0.54 -0.49 16 11 C -0.11 -2.36 4.93 -27.88 -0.14 -2.50 16 12 C 0.17 3.98 4.87 -4.04 -0.02 3.96 16 13 N -0.54 -13.83 2.77 -165.66 -0.46 -14.29 16 14 C -0.26 -7.20 8.57 -15.06 -0.13 -7.33 16 15 H 0.06 1.59 6.45 -52.49 -0.34 1.25 16 16 C 0.04 1.20 4.18 -17.43 -0.07 1.13 16 17 N -0.88 -25.58 11.43 55.49 0.63 -24.95 16 18 Si 0.89 22.47 29.60 -169.99 -5.03 17.44 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 22 C 0.12 2.77 6.60 -67.94 -0.45 2.33 16 23 C -0.20 -4.23 9.85 -26.74 -0.26 -4.49 16 24 C -0.22 -4.72 10.19 -26.74 -0.27 -4.99 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.13 1.66 7.62 -52.49 -0.40 1.26 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.65 8.05 -52.49 -0.42 1.22 16 32 H 0.10 2.28 5.86 -51.93 -0.30 1.97 16 33 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 34 H 0.02 0.37 8.07 -51.93 -0.42 -0.05 16 35 H 0.11 2.95 4.14 -51.92 -0.21 2.73 16 36 H 0.25 7.14 8.32 -40.82 -0.34 6.80 16 37 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 38 H 0.09 2.11 6.38 -51.93 -0.33 1.78 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -30.87 339.58 -8.84 -39.72 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.79 Total: 5.22 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.71 Total: -11.21 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.18 Total: -39.24 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.60 Total: -17.05 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.87 -8.84 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274777202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.279 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds