Wall clock time and date at job start Tue Mar 31 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34705 * 117.00099 * 2 1 4 4 O 1.21470 * 119.99952 * 359.97438 * 3 2 1 5 5 C 1.47722 * 120.00367 * 179.97438 * 3 2 1 6 6 C 1.39654 * 120.14590 * 5.47804 * 5 3 2 7 7 C 1.37926 * 119.84853 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.14858 * 359.97438 * 7 6 5 9 9 C 1.38354 * 120.30499 * 0.02562 * 8 7 6 10 10 C 1.37965 * 120.14835 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.07640 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47344 * 97.00760 * 11 10 9 13 13 N 1.46498 * 109.47520 * 179.97438 * 12 11 10 14 14 C 1.36935 * 120.00566 * 270.00518 * 13 12 11 15 15 H 1.07994 * 120.00329 * 140.76502 * 14 13 12 16 16 C 1.38817 * 119.99252 * 320.76393 * 14 13 12 17 17 N 1.31614 * 120.00656 * 341.03440 * 16 14 13 18 18 Si 1.86806 * 119.99432 * 161.02934 * 16 14 13 19 19 H 1.48496 * 109.47048 * 60.00479 * 18 16 14 20 20 H 1.48505 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47466 * 300.00041 * 18 16 14 22 22 C 1.46499 * 119.99794 * 90.00233 * 13 12 11 23 23 C 1.52998 * 117.49883 * 192.91235 * 22 13 12 24 24 C 1.52993 * 117.50123 * 124.29033 * 22 13 12 25 25 H 1.08991 * 109.47467 * 300.00315 * 1 2 3 26 26 H 1.09001 * 109.46871 * 60.00329 * 1 2 3 27 27 H 1.09001 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.07636 * 0.28728 * 6 5 3 29 29 H 1.07996 * 119.92644 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.85019 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.92631 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.47378 * 217.00884 * 11 10 9 33 33 H 1.09001 * 109.47118 * 337.01068 * 11 10 9 34 34 H 1.09003 * 109.47411 * 300.00662 * 12 11 10 35 35 H 1.09008 * 109.47096 * 59.99966 * 12 11 10 36 36 H 0.97003 * 120.00421 * 185.03376 * 17 16 14 37 37 H 1.09009 * 115.55228 * 338.61876 * 22 13 12 38 38 H 1.08999 * 117.50146 * 359.97438 * 23 22 13 39 39 H 1.09006 * 117.49839 * 145.01843 * 23 22 13 40 40 H 1.09005 * 117.50347 * 214.97780 * 24 22 13 41 41 H 1.09002 * 117.50240 * 359.97435 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3022 0.1138 -0.1142 7 6 5.6792 0.1931 -0.1124 8 6 6.3044 1.4224 0.0022 9 6 5.5543 2.5793 0.1162 10 6 4.1761 2.5143 0.1158 11 6 3.3606 3.7755 0.2395 12 6 2.9306 4.2434 -1.1523 13 7 2.1373 5.4691 -1.0320 14 6 0.7776 5.3935 -0.8882 15 1 0.2669 6.0698 -0.2188 16 6 0.0558 4.4474 -1.6029 17 7 0.5830 3.8855 -2.6700 18 14 -1.6640 3.9715 -1.0500 19 1 -2.5374 5.1724 -1.0609 20 1 -2.2165 2.9499 -1.9755 21 1 -1.6054 3.4144 0.3252 22 6 2.7986 6.7759 -1.0655 23 6 1.9780 7.9942 -0.6374 24 6 2.3207 7.7829 -2.1134 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8155 -0.8457 -0.2083 29 1 6.2708 -0.7061 -0.2007 30 1 7.3830 1.4789 0.0034 31 1 6.0486 3.5354 0.2049 32 1 2.4765 3.5786 0.8459 33 1 3.9612 4.5515 0.7142 34 1 3.8147 4.4404 -1.7587 35 1 2.3300 3.4675 -1.6270 36 1 0.0529 3.2796 -3.2111 37 1 3.8605 6.7720 -0.8188 38 1 0.9460 7.8235 -0.3312 39 1 2.4999 8.7920 -0.1088 40 1 3.0679 8.4418 -2.5560 41 1 1.5144 7.4731 -2.7783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274777202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:53 Heat of formation + Delta-G solvation = -17.617125 kcal Electronic energy + Delta-G solvation = -23888.746635 eV Core-core repulsion = 20542.138217 eV Total energy + Delta-G solvation = -3346.608418 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.58464 -39.75190 -38.68087 -37.36364 -35.53722 -33.99376 -32.38387 -32.01281 -29.22475 -28.46066 -26.37365 -24.84414 -23.82308 -22.96512 -22.47381 -21.55241 -21.27517 -18.78108 -18.16487 -17.76438 -17.28509 -17.16844 -16.68472 -16.28050 -16.14917 -15.59511 -15.47861 -14.69700 -14.44331 -14.40354 -14.05415 -13.86622 -13.69137 -13.36628 -13.12238 -13.00014 -12.79403 -12.66704 -12.57910 -12.43147 -12.06555 -12.00406 -11.79098 -11.70281 -11.37321 -11.31175 -10.88583 -10.78072 -10.35597 -9.90528 -9.64995 -8.29760 -7.74594 -5.35538 -0.13369 0.48179 1.35174 1.39230 1.46490 1.73861 1.82018 2.50995 2.89556 3.27235 3.51174 3.56457 3.81487 4.02758 4.05481 4.22887 4.23495 4.28314 4.32438 4.43959 4.52419 4.54376 4.58901 4.62929 4.68236 4.88681 4.94502 4.97285 5.01619 5.06894 5.14509 5.37350 5.38148 5.44050 5.47534 5.55245 5.57308 5.73897 5.85897 6.00755 6.05901 6.57630 6.95789 7.27537 7.96722 8.45922 9.21185 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.007775 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.121019 B = 3600.258175 C = 5348.973068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.479 6.479 5 C -0.148 4.148 6 C -0.067 4.067 7 C -0.138 4.138 8 C -0.074 4.074 9 C -0.140 4.140 10 C -0.026 4.026 11 C -0.094 4.094 12 C 0.171 3.829 13 N -0.563 5.563 14 C -0.261 4.261 15 H 0.044 0.956 16 C 0.007 3.993 17 N -0.907 5.907 18 Si 0.935 3.065 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.103 3.897 23 C -0.188 4.188 24 C -0.216 4.216 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.013 0.987 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.176 -8.682 5.958 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.366 6.366 5 C -0.149 4.149 6 C -0.085 4.085 7 C -0.156 4.156 8 C -0.091 4.091 9 C -0.158 4.158 10 C -0.027 4.027 11 C -0.133 4.133 12 C 0.045 3.955 13 N -0.279 5.279 14 C -0.391 4.391 15 H 0.061 0.939 16 C -0.191 4.191 17 N -0.550 5.550 18 Si 0.765 3.235 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.209 1.209 22 C -0.006 4.006 23 C -0.227 4.227 24 C -0.257 4.257 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.160 0.840 28 H 0.163 0.837 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.867 -8.577 5.872 15.037 hybrid contribution -1.927 0.069 -0.048 1.929 sum 8.940 -8.508 5.823 13.646 Atomic orbital electron populations 1.23354 0.75856 1.05243 1.01165 1.86454 1.23774 1.32626 1.85103 1.21920 0.90424 0.81750 0.74396 1.91083 1.67060 1.35339 1.43112 1.19116 0.88314 0.95804 1.11642 1.21626 0.95012 0.96985 0.94883 1.21498 0.93396 0.99522 1.01152 1.21808 1.01761 0.91463 0.94110 1.21267 0.91488 1.00689 1.02350 1.20224 0.95140 0.93332 0.93991 1.21280 0.98088 0.92819 1.01110 1.20699 0.92448 0.90038 0.92321 1.43486 1.02644 0.99277 1.82499 1.18798 0.83766 1.17342 1.19177 0.93878 1.25421 0.99374 0.99730 0.94592 1.69972 1.36698 1.33164 1.15197 0.85868 0.82119 0.77642 0.77885 1.20973 1.21686 1.20915 1.21517 0.95039 0.82990 1.01018 1.23039 1.01120 1.01073 0.97483 1.23191 1.03954 1.06445 0.92078 0.92882 0.94514 0.84030 0.83691 0.81745 0.81745 0.83953 0.91834 0.92407 0.96809 0.90396 0.94614 0.86892 0.91283 0.87196 0.88074 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.17 10.56 113.37 1.20 2.37 16 2 O -0.36 -12.72 9.83 -56.15 -0.55 -13.27 16 3 C 0.47 19.37 7.80 70.33 0.55 19.92 16 4 O -0.48 -23.69 10.66 19.93 0.21 -23.48 16 5 C -0.15 -5.22 5.87 -20.10 -0.12 -5.34 16 6 C -0.07 -1.77 9.62 22.54 0.22 -1.55 16 7 C -0.14 -2.72 10.03 22.23 0.22 -2.50 16 8 C -0.07 -1.46 10.04 22.33 0.22 -1.23 16 9 C -0.14 -3.74 9.66 22.23 0.21 -3.52 16 10 C -0.03 -0.91 5.17 -19.60 -0.10 -1.01 16 11 C -0.09 -4.00 4.93 29.85 0.15 -3.85 16 12 C 0.17 8.50 4.87 86.38 0.42 8.92 16 13 N -0.56 -29.52 2.77 -678.03 -1.88 -31.40 16 14 C -0.26 -15.08 8.57 84.04 0.72 -14.36 16 15 H 0.04 2.56 6.45 -2.91 -0.02 2.54 16 16 C 0.01 0.44 4.18 84.86 0.35 0.79 16 17 N -0.91 -55.05 11.43 21.65 0.25 -54.80 16 18 Si 0.94 48.20 29.60 68.60 2.03 50.23 16 19 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 20 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 21 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 22 C 0.10 4.56 6.60 44.99 0.30 4.85 16 23 C -0.19 -7.60 9.85 30.59 0.30 -7.30 16 24 C -0.22 -9.14 10.19 30.59 0.31 -8.83 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.15 3.32 7.62 -2.91 -0.02 3.30 16 29 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.14 3.27 8.05 -2.91 -0.02 3.25 16 32 H 0.06 3.14 5.86 -2.39 -0.01 3.13 16 33 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 34 H 0.01 0.66 8.07 -2.39 -0.02 0.64 16 35 H 0.08 4.45 4.14 -2.38 -0.01 4.44 16 36 H 0.24 14.60 8.32 -92.71 -0.77 13.83 16 37 H 0.11 4.32 8.14 -2.38 -0.02 4.30 16 38 H 0.07 3.14 6.38 -2.39 -0.02 3.13 16 39 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 40 H 0.10 3.56 8.14 -2.38 -0.02 3.54 16 41 H 0.05 2.67 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -72.48 339.58 6.04 -66.43 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.02 Total: 18.94 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.96 Total: -12.64 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.63 Total: -86.21 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.34 Total: -36.75 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -72.48 6.04 -66.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274777202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.818 kcal (2) G-P(sol) polarization free energy of solvation -72.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds