Wall clock time and date at job start Tue Mar 31 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00035 * 2 1 4 4 H 1.08998 * 109.57152 * 329.75693 * 3 2 1 5 5 C 1.52849 * 109.57193 * 89.99972 * 3 2 1 6 6 C 1.50594 * 110.50300 * 171.35053 * 5 3 2 7 7 C 1.38515 * 118.92920 * 159.47436 * 6 5 3 8 8 C 1.38124 * 120.29772 * 179.53187 * 7 6 5 9 9 C 1.38301 * 120.15511 * 0.07889 * 8 7 6 10 10 C 1.38035 * 119.90646 * 0.06962 * 9 8 7 11 11 C 1.38561 * 121.50113 * 339.26762 * 6 5 3 12 12 N 1.40175 * 120.82234 * 0.53220 * 11 6 5 13 13 C 1.34780 * 120.55471 * 166.45877 * 12 11 6 14 14 O 1.21288 * 120.00071 * 353.91180 * 13 12 11 15 15 C 1.50704 * 119.99543 * 174.18170 * 13 12 11 16 16 C 1.53004 * 109.46782 * 185.18978 * 15 13 12 17 17 C 1.50704 * 109.47161 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99708 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00015 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99550 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99935 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47173 * 89.99759 * 21 19 17 23 23 H 1.48501 * 109.47032 * 209.99751 * 21 19 17 24 24 H 1.48501 * 109.46994 * 329.99859 * 21 19 17 25 25 C 1.46927 * 118.88987 * 346.73740 * 12 11 6 26 26 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47240 * 300.00210 * 1 2 3 28 28 H 1.09004 * 109.47256 * 59.99184 * 1 2 3 29 29 H 1.09002 * 109.26852 * 51.08949 * 5 3 2 30 30 H 1.08995 * 109.27491 * 291.61837 * 5 3 2 31 31 H 1.07994 * 119.84878 * 359.60670 * 7 6 5 32 32 H 1.08000 * 119.91930 * 180.02562 * 8 7 6 33 33 H 1.08007 * 120.04618 * 180.02562 * 9 8 7 34 34 H 1.08000 * 119.98069 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47427 * 305.18443 * 15 13 12 36 36 H 1.08991 * 109.47117 * 65.19028 * 15 13 12 37 37 H 1.09003 * 109.47126 * 300.00058 * 16 15 13 38 38 H 1.08999 * 109.47439 * 59.99500 * 16 15 13 39 39 H 0.97003 * 119.99738 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.79861 * 163.95380 * 25 12 11 41 41 H 1.08993 * 109.79825 * 284.80975 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3482 1.9999 -0.5173 5 6 2.2185 1.7732 1.4402 6 6 3.0186 3.0487 1.4700 7 6 2.9548 3.8535 2.5956 8 6 3.6845 5.0246 2.6571 9 6 4.4832 5.4022 1.5931 10 6 4.5500 4.6074 0.4665 11 6 3.8157 3.4285 0.4022 12 7 3.8945 2.6374 -0.7523 13 6 4.4419 3.1271 -1.8824 14 8 4.7705 4.2931 -1.9413 15 6 4.6400 2.2272 -3.0749 16 6 5.3905 2.9888 -4.1694 17 6 5.5882 2.0892 -5.3622 18 1 5.2153 1.0757 -5.3418 19 6 6.2440 2.5602 -6.4798 20 7 6.4168 1.7749 -7.5204 21 14 6.8882 4.3133 -6.5151 22 1 8.2781 4.3405 -5.9933 23 1 6.8738 4.8178 -7.9117 24 1 6.0246 5.1751 -5.6685 25 6 3.3647 1.2676 -0.7117 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5140 -0.8899 29 1 2.7513 1.0013 1.9956 30 1 1.2485 1.9461 1.9062 31 1 2.3326 3.5634 3.4292 32 1 3.6305 5.6474 3.5378 33 1 5.0534 6.3182 1.6432 34 1 5.1730 4.9013 -0.3652 35 1 5.2194 1.3529 -2.7782 36 1 3.6694 1.9082 -3.4546 37 1 4.8112 3.8631 -4.4662 38 1 6.3611 3.3079 -3.7897 39 1 6.8785 2.1062 -8.3066 40 1 3.2373 0.8907 -1.7266 41 1 4.0498 0.6230 -0.1612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291427507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:37 Heat of formation + Delta-G solvation = -47.438644 kcal Electronic energy + Delta-G solvation = -23006.065780 eV Core-core repulsion = 19658.164204 eV Total energy + Delta-G solvation = -3347.901576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14415 -38.78609 -38.19891 -35.82615 -33.67445 -33.09797 -31.61739 -30.24332 -29.76721 -26.88121 -26.47587 -25.58147 -23.21648 -22.83341 -21.33097 -20.23653 -18.99387 -17.40655 -17.32361 -16.91146 -16.44598 -15.73377 -15.67281 -15.25392 -15.10884 -14.42354 -14.15154 -14.01917 -13.92085 -13.44640 -13.24252 -13.12308 -13.03182 -12.60130 -12.33900 -12.00730 -11.88327 -11.55932 -11.43896 -11.32408 -11.03480 -10.98700 -10.25762 -10.12658 -10.08996 -9.95011 -9.81157 -9.24562 -9.11755 -8.71883 -8.54690 -7.84328 -6.06464 -4.05908 1.27888 1.41337 2.66601 2.84041 3.35041 3.42075 3.51746 3.51978 3.82269 4.36062 4.47347 4.53219 4.72025 4.76406 4.91312 4.96634 5.05964 5.10041 5.17603 5.26717 5.28832 5.36204 5.41671 5.45174 5.54309 5.59869 5.67958 5.72492 5.92177 5.95232 6.09950 6.25396 6.39521 6.54853 6.57414 6.62465 6.84283 7.15399 7.26489 7.34804 7.36568 7.73216 8.28131 8.48135 8.95808 9.55995 11.06245 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.004574 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.266632 B = 6120.346557 C = 7667.152168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.077 3.923 4 H 0.071 0.929 5 C -0.095 4.095 6 C -0.124 4.124 7 C -0.099 4.099 8 C -0.148 4.148 9 C -0.101 4.101 10 C -0.151 4.151 11 C 0.163 3.837 12 N -0.561 5.561 13 C 0.515 3.485 14 O -0.510 6.510 15 C -0.121 4.121 16 C 0.001 3.999 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.902 5.902 21 Si 0.876 3.124 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.261 1.261 25 C 0.106 3.894 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.169 0.831 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.019 0.981 39 H 0.264 0.736 40 H 0.108 0.892 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.955 -0.022 21.253 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.018 3.982 4 H 0.089 0.911 5 C -0.132 4.132 6 C -0.127 4.127 7 C -0.118 4.118 8 C -0.167 4.167 9 C -0.120 4.120 10 C -0.170 4.170 11 C 0.068 3.932 12 N -0.286 5.286 13 C 0.308 3.692 14 O -0.385 6.385 15 C -0.160 4.160 16 C -0.037 4.037 17 C -0.564 4.564 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.540 5.540 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.185 1.185 25 C -0.016 4.016 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.186 0.814 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.584 0.368 20.915 23.443 hybrid contribution 0.064 1.004 0.045 1.007 sum -10.519 1.372 20.959 23.491 Atomic orbital electron populations 1.22839 0.80521 1.03013 1.00212 1.87886 1.20086 1.26460 1.95042 1.22197 0.95056 0.85336 0.95622 0.91068 1.20853 0.99989 0.94907 0.97469 1.19283 1.00230 0.98169 0.94972 1.20768 0.99760 0.94525 0.96742 1.21014 0.99172 0.97407 0.99079 1.21124 0.98451 0.99447 0.92982 1.22262 1.00281 0.93971 1.00522 1.17830 0.96175 0.92582 0.86604 1.45945 1.58581 1.13854 1.10255 1.21834 0.75091 0.89062 0.83244 1.90472 1.48850 1.17688 1.81484 1.21785 1.03264 0.98634 0.92357 1.19408 0.95397 0.96140 0.92732 1.21065 1.37564 0.99960 0.97840 0.90828 1.24956 0.95318 0.97496 0.95326 1.69906 1.42652 1.36226 1.05237 0.86814 0.79979 0.85663 0.77221 1.20197 1.21379 1.18525 1.21787 0.93907 0.82253 1.03688 0.89258 0.94006 0.93655 0.89560 0.90405 0.86126 0.86349 0.85917 0.81445 0.89088 0.88997 0.95550 0.96238 0.92652 0.87343 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.38 -3.97 10.36 -35.23 -0.37 -4.33 16 3 C 0.08 0.83 2.76 -26.78 -0.07 0.76 16 4 H 0.07 0.80 7.80 -51.93 -0.40 0.39 16 5 C -0.09 -0.96 5.40 -28.01 -0.15 -1.11 16 6 C -0.12 -1.53 5.76 -104.45 -0.60 -2.13 16 7 C -0.10 -1.08 9.66 -39.52 -0.38 -1.47 16 8 C -0.15 -1.64 10.04 -39.60 -0.40 -2.03 16 9 C -0.10 -1.30 10.05 -39.63 -0.40 -1.70 16 10 C -0.15 -2.36 8.87 -39.36 -0.35 -2.71 16 11 C 0.16 2.44 6.31 -83.63 -0.53 1.91 16 12 N -0.56 -8.53 2.98 -113.07 -0.34 -8.86 16 13 C 0.52 9.42 7.55 -10.98 -0.08 9.33 16 14 O -0.51 -10.75 12.66 5.55 0.07 -10.68 16 15 C -0.12 -2.29 4.06 -27.88 -0.11 -2.40 16 16 C 0.00 0.03 3.35 -27.88 -0.09 -0.07 16 17 C -0.53 -14.76 9.66 -34.44 -0.33 -15.10 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.74 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 21 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 25 C 0.11 1.30 5.81 -3.78 -0.02 1.28 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.17 3.00 4.98 -53.58 -0.27 2.74 16 35 H 0.09 1.59 8.07 -51.93 -0.42 1.17 16 36 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 37 H 0.03 0.67 7.10 -51.93 -0.37 0.30 16 38 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.11 1.28 6.26 -51.93 -0.33 0.96 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -32.79 332.23 -8.00 -40.79 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.95 Total: -0.49 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.53 Total: -12.13 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.44 Total: -35.72 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.29 Total: -15.02 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.79 -8.00 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291427507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.647 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds