Wall clock time and date at job start Tue Mar 31 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00035 * 2 1 4 4 H 1.08998 * 109.57152 * 329.75693 * 3 2 1 5 5 C 1.52849 * 109.57193 * 89.99972 * 3 2 1 6 6 C 1.50594 * 110.50300 * 171.35053 * 5 3 2 7 7 C 1.38515 * 118.92920 * 159.47436 * 6 5 3 8 8 C 1.38124 * 120.29772 * 179.53187 * 7 6 5 9 9 C 1.38301 * 120.15511 * 0.07889 * 8 7 6 10 10 C 1.38035 * 119.90646 * 0.06962 * 9 8 7 11 11 C 1.38561 * 121.50113 * 339.26762 * 6 5 3 12 12 N 1.40175 * 120.82234 * 0.53220 * 11 6 5 13 13 C 1.34780 * 120.55471 * 166.45877 * 12 11 6 14 14 O 1.21288 * 120.00071 * 353.91180 * 13 12 11 15 15 C 1.50704 * 119.99543 * 174.18170 * 13 12 11 16 16 C 1.53004 * 109.46782 * 185.18978 * 15 13 12 17 17 C 1.50704 * 109.47161 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99708 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00015 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99550 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99935 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47173 * 89.99759 * 21 19 17 23 23 H 1.48501 * 109.47032 * 209.99751 * 21 19 17 24 24 H 1.48501 * 109.46994 * 329.99859 * 21 19 17 25 25 C 1.46927 * 118.88987 * 346.73740 * 12 11 6 26 26 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47240 * 300.00210 * 1 2 3 28 28 H 1.09004 * 109.47256 * 59.99184 * 1 2 3 29 29 H 1.09002 * 109.26852 * 51.08949 * 5 3 2 30 30 H 1.08995 * 109.27491 * 291.61837 * 5 3 2 31 31 H 1.07994 * 119.84878 * 359.60670 * 7 6 5 32 32 H 1.08000 * 119.91930 * 180.02562 * 8 7 6 33 33 H 1.08007 * 120.04618 * 180.02562 * 9 8 7 34 34 H 1.08000 * 119.98069 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47427 * 305.18443 * 15 13 12 36 36 H 1.08991 * 109.47117 * 65.19028 * 15 13 12 37 37 H 1.09003 * 109.47126 * 300.00058 * 16 15 13 38 38 H 1.08999 * 109.47439 * 59.99500 * 16 15 13 39 39 H 0.97003 * 119.99738 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.79861 * 163.95380 * 25 12 11 41 41 H 1.08993 * 109.79825 * 284.80975 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3482 1.9999 -0.5173 5 6 2.2185 1.7732 1.4402 6 6 3.0186 3.0487 1.4700 7 6 2.9548 3.8535 2.5956 8 6 3.6845 5.0246 2.6571 9 6 4.4832 5.4022 1.5931 10 6 4.5500 4.6074 0.4665 11 6 3.8157 3.4285 0.4022 12 7 3.8945 2.6374 -0.7523 13 6 4.4419 3.1271 -1.8824 14 8 4.7705 4.2931 -1.9413 15 6 4.6400 2.2272 -3.0749 16 6 5.3905 2.9888 -4.1694 17 6 5.5882 2.0892 -5.3622 18 1 5.2153 1.0757 -5.3418 19 6 6.2440 2.5602 -6.4798 20 7 6.4168 1.7749 -7.5204 21 14 6.8882 4.3133 -6.5151 22 1 8.2781 4.3405 -5.9933 23 1 6.8738 4.8178 -7.9117 24 1 6.0246 5.1751 -5.6685 25 6 3.3647 1.2676 -0.7117 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5140 -0.8899 29 1 2.7513 1.0013 1.9956 30 1 1.2485 1.9461 1.9062 31 1 2.3326 3.5634 3.4292 32 1 3.6305 5.6474 3.5378 33 1 5.0534 6.3182 1.6432 34 1 5.1730 4.9013 -0.3652 35 1 5.2194 1.3529 -2.7782 36 1 3.6694 1.9082 -3.4546 37 1 4.8112 3.8631 -4.4662 38 1 6.3611 3.3079 -3.7897 39 1 6.8785 2.1062 -8.3066 40 1 3.2373 0.8907 -1.7266 41 1 4.0498 0.6230 -0.1612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291427507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:36 Heat of formation + Delta-G solvation = -67.477840 kcal Electronic energy + Delta-G solvation = -23006.934744 eV Core-core repulsion = 19658.164204 eV Total energy + Delta-G solvation = -3348.770541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.27225 -39.93727 -39.06208 -36.90832 -35.66306 -34.06306 -33.51364 -31.32592 -30.78144 -28.25396 -27.44791 -26.68038 -24.48874 -23.75707 -22.89449 -21.43517 -20.22598 -19.17221 -18.37870 -18.00448 -17.75348 -17.01083 -16.56056 -16.35248 -16.22144 -15.90375 -15.42039 -15.12674 -15.09705 -14.74769 -14.50568 -14.36055 -14.18411 -13.98998 -13.54320 -13.42466 -12.96410 -12.79708 -12.62799 -12.46529 -12.23399 -12.08831 -11.99896 -11.83731 -11.79389 -11.42047 -11.21010 -10.79444 -10.75703 -10.42461 -9.67596 -8.91130 -8.32620 -6.35915 0.27430 0.43083 1.32269 1.34557 1.46973 1.48895 1.59456 2.33651 2.68841 2.85663 3.03119 3.42147 3.59568 3.66563 3.87013 4.07130 4.09653 4.19802 4.27076 4.31307 4.37779 4.48147 4.52129 4.55575 4.56924 4.58216 4.70819 4.83645 4.88496 4.90681 4.92283 5.18003 5.24565 5.28982 5.37503 5.46367 5.56614 5.58209 5.64572 6.09098 6.13242 6.18727 6.22907 6.69836 6.95093 7.29427 8.82994 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.004574 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.266632 B = 6120.346557 C = 7667.152168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.389 6.389 3 C 0.083 3.917 4 H 0.066 0.934 5 C -0.090 4.090 6 C -0.121 4.121 7 C -0.095 4.095 8 C -0.139 4.139 9 C -0.110 4.110 10 C -0.181 4.181 11 C 0.132 3.868 12 N -0.554 5.554 13 C 0.515 3.485 14 O -0.547 6.547 15 C -0.113 4.113 16 C 0.006 3.994 17 C -0.529 4.529 18 H 0.051 0.949 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.936 3.064 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.098 3.902 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.013 0.987 38 H 0.011 0.989 39 H 0.268 0.732 40 H 0.108 0.892 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 0.159 24.288 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.308 6.308 3 C 0.024 3.976 4 H 0.084 0.916 5 C -0.127 4.127 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.158 4.158 9 C -0.129 4.129 10 C -0.201 4.201 11 C 0.038 3.962 12 N -0.278 5.278 13 C 0.307 3.693 14 O -0.425 6.425 15 C -0.152 4.152 16 C -0.032 4.032 17 C -0.567 4.567 18 H 0.070 0.930 19 C -0.181 4.181 20 N -0.582 5.582 21 Si 0.761 3.239 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.024 4.024 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.093 0.524 23.988 26.869 hybrid contribution 0.457 0.878 -0.796 1.270 sum -11.637 1.402 23.192 25.985 Atomic orbital electron populations 1.23050 0.78972 1.04264 1.00979 1.87867 1.21755 1.26002 1.95148 1.22050 0.93894 0.85588 0.96031 0.91640 1.20877 1.00937 0.93880 0.96990 1.19595 0.99322 0.99121 0.94335 1.21232 0.99331 0.93765 0.96992 1.21418 0.97535 0.97658 0.99189 1.21334 0.99142 0.99634 0.92777 1.22118 1.01386 0.95559 1.00994 1.18060 0.97901 0.92905 0.87320 1.45767 1.57657 1.14838 1.09533 1.21505 0.75455 0.88332 0.83962 1.90483 1.50752 1.18961 1.82344 1.21581 1.03536 0.98492 0.91601 1.19237 0.95476 0.95465 0.92999 1.21371 1.36630 0.99593 0.99129 0.93027 1.25765 0.95847 1.01402 0.95136 1.70016 1.43993 1.38179 1.06051 0.85861 0.79570 0.80925 0.77571 1.19321 1.20350 1.18539 1.22012 0.95277 0.80774 1.04329 0.87847 0.92412 0.93727 0.88601 0.87935 0.82473 0.83065 0.84673 0.84579 0.87657 0.87582 0.96850 0.97089 0.92331 0.87348 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.39 -7.29 10.36 -148.98 -1.54 -8.83 16 3 C 0.08 1.64 2.76 30.56 0.08 1.72 16 4 H 0.07 1.36 7.80 -2.39 -0.02 1.34 16 5 C -0.09 -1.50 5.40 29.76 0.16 -1.34 16 6 C -0.12 -2.67 5.76 -19.75 -0.11 -2.79 16 7 C -0.09 -1.69 9.66 22.31 0.22 -1.47 16 8 C -0.14 -2.62 10.04 22.26 0.22 -2.40 16 9 C -0.11 -2.71 10.05 22.24 0.22 -2.49 16 10 C -0.18 -5.76 8.87 22.41 0.20 -5.56 16 11 C 0.13 3.88 6.31 38.07 0.24 4.12 16 12 N -0.55 -16.82 2.98 -630.03 -1.87 -18.70 16 13 C 0.52 19.33 7.55 87.66 0.66 19.99 16 14 O -0.55 -24.13 12.66 -3.05 -0.04 -24.17 16 15 C -0.11 -4.33 4.06 29.85 0.12 -4.21 16 16 C 0.01 0.31 3.35 29.85 0.10 0.41 16 17 C -0.53 -30.38 9.66 25.60 0.25 -30.13 16 18 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 19 C 0.02 0.97 5.47 84.66 0.46 1.44 16 20 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 21 Si 0.94 46.54 27.47 68.60 1.88 48.42 16 22 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.26 -12.89 6.54 99.48 0.65 -12.24 16 25 C 0.10 2.30 5.81 86.32 0.50 2.80 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.55 8.08 -2.39 -0.02 0.53 16 28 H 0.04 0.57 8.09 -2.38 -0.02 0.55 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.25 8.06 -2.39 -0.02 1.23 16 31 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.14 5.22 4.98 -20.22 -0.10 5.12 16 35 H 0.11 3.70 8.07 -2.39 -0.02 3.68 16 36 H 0.11 3.73 7.58 -2.39 -0.02 3.71 16 37 H 0.01 0.68 7.10 -2.39 -0.02 0.67 16 38 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.11 2.50 6.26 -2.38 -0.01 2.48 16 41 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -72.82 332.23 4.16 -68.66 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.88 Total: 11.51 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.55 Total: -18.40 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.58 Total: -77.19 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.58 Total: -33.01 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.42 kcal Total: -72.82 4.16 -68.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291427507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.185 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds