Wall clock time and date at job start Tue Mar 31 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00448 * 2 1 4 4 N 1.46897 * 109.47456 * 124.78983 * 3 2 1 5 5 C 1.46906 * 111.00048 * 64.21918 * 4 3 2 6 6 C 1.50696 * 109.46952 * 66.04643 * 5 4 3 7 7 H 1.07998 * 120.00684 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99852 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99602 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99834 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47438 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46858 * 120.00241 * 10 8 6 13 13 H 1.48497 * 109.47037 * 240.00019 * 10 8 6 14 14 C 1.46896 * 111.00170 * 300.26439 * 4 3 2 15 15 H 1.09003 * 109.46974 * 70.13284 * 14 4 3 16 16 C 1.50698 * 109.47493 * 190.13584 * 14 4 3 17 17 O 1.20825 * 119.99854 * 0.02562 * 16 14 4 18 18 O 1.34229 * 120.00017 * 179.72182 * 16 14 4 19 19 C 1.45202 * 116.99928 * 180.02562 * 18 16 14 20 20 C 1.50698 * 109.47039 * 310.13943 * 14 4 3 21 21 C 1.38235 * 120.00160 * 312.98432 * 20 14 4 22 22 C 1.38235 * 120.00194 * 179.81458 * 21 20 14 23 23 C 1.38237 * 119.99784 * 0.38780 * 22 21 20 24 24 C 1.38231 * 119.99996 * 359.86195 * 23 22 21 25 25 C 1.38228 * 120.00247 * 359.95735 * 24 23 22 26 26 H 1.08004 * 119.99944 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00520 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99944 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47035 * 4.78749 * 3 2 1 30 30 H 1.09006 * 109.47215 * 244.79308 * 3 2 1 31 31 H 1.09002 * 109.46799 * 186.04912 * 5 4 3 32 32 H 1.09000 * 109.46758 * 306.05127 * 5 4 3 33 33 H 0.97000 * 119.99953 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46801 * 300.00446 * 19 18 16 35 35 H 1.09004 * 109.47146 * 60.00209 * 19 18 16 36 36 H 1.08997 * 109.46863 * 180.02562 * 19 18 16 37 37 H 1.07999 * 119.99564 * 359.97438 * 21 20 14 38 38 H 1.07999 * 120.00038 * 180.23364 * 22 21 20 39 39 H 1.07999 * 119.99929 * 179.83675 * 23 22 21 40 40 H 1.08004 * 119.99885 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.00120 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9927 1.3340 1.1374 5 6 4.0211 0.2934 1.0037 6 6 4.8971 0.6025 -0.1829 7 1 4.7091 1.4839 -0.7780 8 6 5.9387 -0.2401 -0.5089 9 7 6.1673 -1.3137 0.2154 10 14 7.0242 0.1427 -1.9802 11 1 6.5607 1.3979 -2.6241 12 1 8.4293 0.3080 -1.5290 13 1 6.9459 -0.9734 -2.9567 14 6 2.2714 1.2008 2.4101 15 1 1.8808 0.1872 2.5020 16 6 3.2125 1.4820 3.5529 17 8 4.3659 1.7649 3.3300 18 8 2.7681 1.4242 4.8181 19 6 3.7301 1.7074 5.8683 20 6 1.1299 2.1840 2.4457 21 6 1.3399 3.5005 2.0803 22 6 0.2919 4.4015 2.1094 23 6 -0.9643 3.9878 2.5115 24 6 -1.1731 2.6725 2.8819 25 6 -0.1261 1.7707 2.8493 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3584 2.1317 0.0858 30 1 2.6243 1.4008 -0.9299 31 1 4.6298 0.2660 1.9075 32 1 3.5416 -0.6747 0.8589 33 1 6.9003 -1.9063 -0.0136 34 1 4.5499 0.9912 5.8127 35 1 4.1204 2.7171 5.7408 36 1 3.2421 1.6260 6.8395 37 1 2.3222 3.8245 1.7696 38 1 0.4552 5.4292 1.8203 39 1 -1.7824 4.6924 2.5368 40 1 -2.1545 2.3494 3.1965 41 1 -0.2892 0.7431 3.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292302771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:28 Heat of formation + Delta-G solvation = -17.729937 kcal Electronic energy + Delta-G solvation = -23818.426452 eV Core-core repulsion = 20471.813142 eV Total energy + Delta-G solvation = -3346.613310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.43411 -39.00530 -37.20038 -35.75893 -32.89808 -32.76330 -31.09821 -30.68767 -28.23223 -27.02899 -26.40471 -23.99245 -22.47083 -21.93181 -21.42622 -20.09744 -18.79048 -17.37491 -16.75014 -16.42211 -15.98255 -15.86336 -15.25975 -14.94640 -14.61886 -14.37590 -13.76774 -13.68257 -13.38386 -13.19161 -12.91611 -12.60683 -12.40782 -12.31774 -12.07332 -11.77878 -11.30757 -11.11894 -10.93948 -10.84473 -10.79072 -10.63711 -10.47532 -10.29980 -10.10018 -9.67630 -9.24995 -8.92741 -8.69220 -8.52539 -8.36686 -7.37031 -5.98150 -3.97444 1.44663 1.57407 2.69307 2.76124 3.02429 3.34232 3.41565 3.46215 3.93674 4.46157 4.82789 4.89969 5.10480 5.13194 5.26194 5.29809 5.33928 5.38511 5.39997 5.45464 5.60762 5.66570 5.70758 5.72974 5.81343 6.03544 6.08145 6.22540 6.37923 6.56962 6.59332 6.65633 6.74458 6.78182 7.02882 7.08135 7.13917 7.30410 7.37029 7.79121 8.07837 8.13001 8.30043 8.52786 9.07618 9.64774 11.13372 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.005910 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.398865 B = 4736.402197 C = 5647.499708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.087 3.913 4 N -0.506 5.506 5 C 0.183 3.817 6 C -0.497 4.497 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.136 3.864 15 H 0.076 0.924 16 C 0.461 3.539 17 O -0.463 6.463 18 O -0.366 6.366 19 C 0.037 3.963 20 C -0.067 4.067 21 C -0.089 4.089 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.097 4.097 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.048 0.952 32 H -0.005 1.005 33 H 0.259 0.741 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.110 6.836 7.415 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.188 4.188 3 C -0.040 4.040 4 N -0.230 5.230 5 C 0.058 3.942 6 C -0.535 4.535 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.026 3.974 15 H 0.093 0.907 16 C 0.301 3.699 17 O -0.345 6.345 18 O -0.283 6.283 19 C -0.057 4.057 20 C -0.068 4.068 21 C -0.108 4.108 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.116 4.116 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.130 0.870 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.013 0.987 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.317 7.246 7.393 16.867 hybrid contribution 0.506 -0.831 -0.646 1.168 sum -12.811 6.415 6.747 15.837 Atomic orbital electron populations 1.23671 0.95847 1.00830 1.03848 1.23893 0.96290 1.01338 0.97248 1.21377 0.93946 0.93000 0.95705 1.62307 1.11677 1.52055 0.97011 1.20010 0.88375 0.86479 0.99306 1.21071 1.12691 1.08551 1.11233 0.91854 1.24945 0.97476 0.95129 0.97015 1.69967 1.30873 1.13707 1.39360 0.86459 0.80473 0.78155 0.82432 1.19676 1.21100 1.21227 1.19965 0.89882 0.97816 0.89767 0.90673 1.23503 0.88463 0.74708 0.83219 1.90735 1.18704 1.40823 1.84282 1.86486 1.43366 1.82221 1.16212 1.23161 0.92653 1.01544 0.88338 1.19421 0.93383 0.94176 0.99817 1.21176 0.99854 0.92445 0.97302 1.21120 0.93055 0.99506 1.00786 1.21103 0.97021 0.96019 0.99839 1.21009 0.98630 0.93577 1.01170 1.20985 0.92121 0.99664 0.98798 0.89127 0.89450 0.87014 0.91443 0.88442 0.93448 0.98714 0.93098 0.92011 0.92206 0.88663 0.85000 0.86252 0.86539 0.86323 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 14.09 29.02 0.41 -2.56 16 2 C -0.17 -2.94 7.73 -36.02 -0.28 -3.22 16 3 C 0.09 1.64 5.12 -4.98 -0.03 1.61 16 4 N -0.51 -10.78 3.89 -232.32 -0.90 -11.68 16 5 C 0.18 4.75 4.19 -4.97 -0.02 4.73 16 6 C -0.50 -13.99 8.46 -34.44 -0.29 -14.28 16 7 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 10 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.14 2.51 1.70 -70.02 -0.12 2.39 16 15 H 0.08 1.38 7.24 -51.93 -0.38 1.01 16 16 C 0.46 9.11 6.79 36.00 0.24 9.35 16 17 O -0.46 -10.82 14.16 -18.75 -0.27 -11.08 16 18 O -0.37 -6.11 10.48 -39.26 -0.41 -6.52 16 19 C 0.04 0.49 10.56 101.05 1.07 1.56 16 20 C -0.07 -1.04 3.42 -104.62 -0.36 -1.40 16 21 C -0.09 -1.35 7.95 -39.58 -0.31 -1.66 16 22 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 25 C -0.10 -1.29 9.44 -39.58 -0.37 -1.66 16 26 H 0.09 1.25 7.84 -52.48 -0.41 0.84 16 27 H 0.09 1.15 8.06 -52.49 -0.42 0.72 16 28 H 0.11 2.19 6.78 -52.48 -0.36 1.84 16 29 H 0.07 1.15 5.58 -51.93 -0.29 0.86 16 30 H 0.10 2.01 6.75 -51.93 -0.35 1.66 16 31 H 0.05 1.38 5.80 -51.93 -0.30 1.08 16 32 H 0.00 -0.13 6.33 -51.93 -0.33 -0.46 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.13 2.19 7.94 -52.49 -0.42 1.78 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.12 1.47 7.99 -52.48 -0.42 1.05 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -32.02 342.05 -7.78 -39.81 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.72 Total: 2.86 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.35 Total: -9.20 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.17 Total: -38.00 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.68 Total: -17.61 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.02 -7.78 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292302771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.076 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds