Wall clock time and date at job start Tue Mar 31 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00448 * 2 1 4 4 N 1.46897 * 109.47456 * 124.78983 * 3 2 1 5 5 C 1.46906 * 111.00048 * 64.21918 * 4 3 2 6 6 C 1.50696 * 109.46952 * 66.04643 * 5 4 3 7 7 H 1.07998 * 120.00684 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99852 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99602 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99834 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47438 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46858 * 120.00241 * 10 8 6 13 13 H 1.48497 * 109.47037 * 240.00019 * 10 8 6 14 14 C 1.46896 * 111.00170 * 300.26439 * 4 3 2 15 15 H 1.09003 * 109.46974 * 70.13284 * 14 4 3 16 16 C 1.50698 * 109.47493 * 190.13584 * 14 4 3 17 17 O 1.20825 * 119.99854 * 0.02562 * 16 14 4 18 18 O 1.34229 * 120.00017 * 179.72182 * 16 14 4 19 19 C 1.45202 * 116.99928 * 180.02562 * 18 16 14 20 20 C 1.50698 * 109.47039 * 310.13943 * 14 4 3 21 21 C 1.38235 * 120.00160 * 312.98432 * 20 14 4 22 22 C 1.38235 * 120.00194 * 179.81458 * 21 20 14 23 23 C 1.38237 * 119.99784 * 0.38780 * 22 21 20 24 24 C 1.38231 * 119.99996 * 359.86195 * 23 22 21 25 25 C 1.38228 * 120.00247 * 359.95735 * 24 23 22 26 26 H 1.08004 * 119.99944 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00520 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99944 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47035 * 4.78749 * 3 2 1 30 30 H 1.09006 * 109.47215 * 244.79308 * 3 2 1 31 31 H 1.09002 * 109.46799 * 186.04912 * 5 4 3 32 32 H 1.09000 * 109.46758 * 306.05127 * 5 4 3 33 33 H 0.97000 * 119.99953 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46801 * 300.00446 * 19 18 16 35 35 H 1.09004 * 109.47146 * 60.00209 * 19 18 16 36 36 H 1.08997 * 109.46863 * 180.02562 * 19 18 16 37 37 H 1.07999 * 119.99564 * 359.97438 * 21 20 14 38 38 H 1.07999 * 120.00038 * 180.23364 * 22 21 20 39 39 H 1.07999 * 119.99929 * 179.83675 * 23 22 21 40 40 H 1.08004 * 119.99885 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.00120 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9927 1.3340 1.1374 5 6 4.0211 0.2934 1.0037 6 6 4.8971 0.6025 -0.1829 7 1 4.7091 1.4839 -0.7780 8 6 5.9387 -0.2401 -0.5089 9 7 6.1673 -1.3137 0.2154 10 14 7.0242 0.1427 -1.9802 11 1 6.5607 1.3979 -2.6241 12 1 8.4293 0.3080 -1.5290 13 1 6.9459 -0.9734 -2.9567 14 6 2.2714 1.2008 2.4101 15 1 1.8808 0.1872 2.5020 16 6 3.2125 1.4820 3.5529 17 8 4.3659 1.7649 3.3300 18 8 2.7681 1.4242 4.8181 19 6 3.7301 1.7074 5.8683 20 6 1.1299 2.1840 2.4457 21 6 1.3399 3.5005 2.0803 22 6 0.2919 4.4015 2.1094 23 6 -0.9643 3.9878 2.5115 24 6 -1.1731 2.6725 2.8819 25 6 -0.1261 1.7707 2.8493 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3584 2.1317 0.0858 30 1 2.6243 1.4008 -0.9299 31 1 4.6298 0.2660 1.9075 32 1 3.5416 -0.6747 0.8589 33 1 6.9003 -1.9063 -0.0136 34 1 4.5499 0.9912 5.8127 35 1 4.1204 2.7171 5.7408 36 1 3.2421 1.6260 6.8395 37 1 2.3222 3.8245 1.7696 38 1 0.4552 5.4292 1.8203 39 1 -1.7824 4.6924 2.5368 40 1 -2.1545 2.3494 3.1965 41 1 -0.2892 0.7431 3.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292302771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:27 Heat of formation + Delta-G solvation = -37.057119 kcal Electronic energy + Delta-G solvation = -23819.264541 eV Core-core repulsion = 20471.813142 eV Total energy + Delta-G solvation = -3347.451399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88851 -40.22265 -38.62123 -37.29483 -34.93519 -34.12899 -32.55563 -31.71200 -29.49605 -28.88841 -27.74459 -25.75075 -23.60975 -23.31810 -22.84909 -21.47510 -20.27849 -18.79203 -18.50677 -17.87812 -17.62185 -17.10879 -16.73481 -16.54221 -16.02934 -15.61929 -15.29569 -15.08560 -14.74188 -14.41926 -14.14415 -14.05259 -13.99926 -13.68216 -13.48152 -13.17411 -12.99327 -12.70518 -12.62476 -12.37564 -12.18513 -12.11100 -11.93893 -11.84545 -11.76467 -11.35482 -11.22747 -10.59730 -10.27635 -9.70623 -9.59168 -9.08495 -8.19594 -6.26928 0.41885 0.58960 1.20015 1.37346 1.39278 1.40405 1.52285 1.67459 2.39595 2.90660 3.14073 3.34680 3.63654 3.91308 3.97117 4.15513 4.23184 4.27021 4.28065 4.30207 4.35316 4.39253 4.60663 4.63755 4.71280 4.78743 4.96427 5.04610 5.09096 5.22782 5.25183 5.27443 5.32846 5.59105 5.64092 5.69886 5.76003 5.76367 5.85664 6.07315 6.17285 6.28506 6.48337 6.81581 6.87238 7.40163 8.92483 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.005910 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.398865 B = 4736.402197 C = 5647.499708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.202 4.202 3 C 0.097 3.903 4 N -0.516 5.516 5 C 0.204 3.796 6 C -0.511 4.511 7 H 0.060 0.940 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.139 3.861 15 H 0.073 0.927 16 C 0.462 3.538 17 O -0.512 6.512 18 O -0.360 6.360 19 C 0.029 3.971 20 C -0.083 4.083 21 C -0.110 4.110 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.101 4.101 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.010 0.990 32 H -0.027 1.027 33 H 0.262 0.738 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.486 8.202 7.528 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.221 4.221 3 C -0.030 4.030 4 N -0.240 5.240 5 C 0.078 3.922 6 C -0.549 4.549 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.208 1.208 13 H -0.201 1.201 14 C 0.029 3.971 15 H 0.091 0.909 16 C 0.304 3.696 17 O -0.398 6.398 18 O -0.276 6.276 19 C -0.064 4.064 20 C -0.083 4.083 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.120 4.120 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.028 0.972 32 H -0.009 1.009 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.159 0.841 37 H 0.121 0.879 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.734 8.622 7.520 20.271 hybrid contribution 1.404 -1.206 -0.550 1.931 sum -15.329 7.417 6.970 18.401 Atomic orbital electron populations 1.23883 0.94343 1.02658 0.98593 1.23504 0.97336 0.99188 1.02109 1.21249 0.93544 0.94725 0.93489 1.62075 1.12544 1.50022 0.99345 1.19510 0.89017 0.86890 0.96759 1.21390 1.13296 1.08380 1.11851 0.92164 1.25869 0.98945 0.94874 1.00055 1.70099 1.31646 1.14776 1.41223 0.85362 0.78154 0.78470 0.78805 1.18704 1.20825 1.20099 1.19958 0.90422 0.98854 0.87873 0.90924 1.23889 0.87903 0.73379 0.84464 1.90706 1.20622 1.43389 1.85112 1.86468 1.43976 1.81561 1.15621 1.23524 0.92643 1.01213 0.89001 1.19193 0.93122 0.93531 1.02464 1.21046 0.99682 0.93057 0.99118 1.21346 0.92908 0.99881 1.00170 1.21523 0.97104 0.96610 0.97658 1.21394 0.99296 0.93171 0.99495 1.21125 0.91495 1.00718 0.98630 0.87217 0.87250 0.90145 0.89229 0.91208 0.97229 1.00911 0.92903 0.93054 0.92229 0.84058 0.87906 0.84372 0.83024 0.82937 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 14.09 67.79 0.96 -3.24 16 2 C -0.20 -7.18 7.73 25.65 0.20 -6.98 16 3 C 0.10 3.78 5.12 85.56 0.44 4.22 16 4 N -0.52 -23.35 3.89 -888.92 -3.46 -26.81 16 5 C 0.20 11.43 4.19 85.55 0.36 11.78 16 6 C -0.51 -30.37 8.46 25.60 0.22 -30.15 16 7 H 0.06 3.53 7.13 -2.91 -0.02 3.51 16 8 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 9 N -0.94 -58.87 13.29 21.45 0.28 -58.59 16 10 Si 0.97 46.47 29.54 68.60 2.03 48.50 16 11 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 14 C 0.14 5.36 1.70 43.42 0.07 5.44 16 15 H 0.07 2.81 7.24 -2.39 -0.02 2.79 16 16 C 0.46 19.23 6.79 71.24 0.48 19.72 16 17 O -0.51 -25.71 14.16 21.97 0.31 -25.40 16 18 O -0.36 -12.21 10.48 -51.41 -0.54 -12.75 16 19 C 0.03 0.77 10.56 113.37 1.20 1.97 16 20 C -0.08 -2.51 3.42 -19.86 -0.07 -2.58 16 21 C -0.11 -3.28 7.95 22.27 0.18 -3.10 16 22 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 23 C -0.11 -1.93 10.05 22.27 0.22 -1.71 16 24 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 25 C -0.10 -2.40 9.44 22.27 0.21 -2.19 16 26 H 0.11 2.57 7.84 -2.91 -0.02 2.55 16 27 H 0.11 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.08 3.37 6.78 -2.91 -0.02 3.35 16 29 H 0.09 3.06 5.58 -2.39 -0.01 3.05 16 30 H 0.07 3.05 6.75 -2.38 -0.02 3.03 16 31 H 0.01 0.61 5.80 -2.39 -0.01 0.60 16 32 H -0.03 -1.57 6.33 -2.39 -0.02 -1.59 16 33 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 36 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 3.60 7.94 -2.91 -0.02 3.58 16 38 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.13 2.78 7.99 -2.91 -0.02 2.76 16 Total: -1.00 -74.95 342.05 5.01 -69.94 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.01 Total: 15.84 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 5.37 Total: -10.73 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.18 Total: -85.40 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.23 Total: -38.15 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -74.95 5.01 -69.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292302771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.881 kcal (2) G-P(sol) polarization free energy of solvation -74.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds