Wall clock time and date at job start Tue Mar 31 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99781 * 2 1 4 4 N 1.46502 * 109.46858 * 125.43626 * 3 2 1 5 5 C 1.46496 * 119.99791 * 265.07714 * 4 3 2 6 6 C 1.50703 * 109.47331 * 275.71035 * 5 4 3 7 7 H 1.08001 * 119.99336 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00396 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99640 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00080 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47071 * 59.99974 * 10 8 6 12 12 H 1.48502 * 109.47149 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47249 * 299.99870 * 10 8 6 14 14 C 1.34770 * 119.99891 * 85.07641 * 4 3 2 15 15 O 1.21279 * 120.00277 * 5.42795 * 14 4 3 16 16 C 1.50705 * 120.00032 * 185.42159 * 14 4 3 17 17 H 1.09007 * 109.46627 * 44.22231 * 16 14 4 18 18 O 1.42898 * 109.47074 * 164.22063 * 16 14 4 19 19 C 1.42904 * 113.99913 * 270.00197 * 18 16 14 20 20 C 1.50700 * 109.47142 * 284.22130 * 16 14 4 21 21 C 1.38232 * 119.99945 * 288.63798 * 20 16 14 22 22 C 1.38233 * 119.99916 * 179.81358 * 21 20 16 23 23 C 1.38242 * 119.99944 * 0.39245 * 22 21 20 24 24 C 1.38235 * 120.00020 * 359.86318 * 23 22 21 25 25 C 1.38236 * 119.99724 * 108.91174 * 20 16 14 26 26 H 1.08002 * 119.99370 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00139 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00106 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47070 * 5.43916 * 3 2 1 30 30 H 1.08994 * 109.47348 * 245.43667 * 3 2 1 31 31 H 1.08998 * 109.47456 * 35.71467 * 5 4 3 32 32 H 1.09002 * 109.47159 * 155.71304 * 5 4 3 33 33 H 0.96994 * 119.99625 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47197 * 300.00317 * 19 18 16 35 35 H 1.09000 * 109.47422 * 59.99934 * 19 18 16 36 36 H 1.09006 * 109.47169 * 180.02562 * 19 18 16 37 37 H 1.07994 * 119.99956 * 0.02562 * 21 20 16 38 38 H 1.07997 * 120.00344 * 180.23228 * 22 21 20 39 39 H 1.08003 * 120.00098 * 179.83401 * 23 22 21 40 40 H 1.07993 * 120.00455 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.00163 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0012 1.3276 1.1254 5 6 2.6112 1.9532 2.3914 6 6 2.8651 3.4368 2.3178 7 1 3.2755 3.8704 1.4178 8 6 2.5734 4.2407 3.3994 9 7 2.0741 3.7125 4.4955 10 14 2.8874 6.0798 3.3078 11 1 2.0883 6.6639 2.2009 12 1 2.4922 6.7139 4.5912 13 1 4.3309 6.3237 3.0586 14 6 4.2226 0.7728 0.9960 15 8 4.5826 0.3430 -0.0794 16 6 5.1411 0.6865 2.1877 17 1 4.5770 0.3499 3.0575 18 8 6.1919 -0.2421 1.9129 19 6 5.8925 -1.5873 2.2912 20 6 5.7313 2.0448 2.4664 21 6 6.6779 2.5760 1.6104 22 6 7.2164 3.8236 1.8639 23 6 6.8143 4.5366 2.9780 24 6 5.8716 4.0031 3.8368 25 6 5.3302 2.7571 3.5811 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3592 2.1313 0.0974 30 1 2.6151 1.4062 -0.9346 31 1 1.5515 1.7745 2.5737 32 1 3.1971 1.5242 3.2043 33 1 1.8692 4.2780 5.2565 34 1 5.6987 -1.6286 3.3630 35 1 5.0109 -1.9295 1.7493 36 1 6.7396 -2.2296 2.0504 37 1 6.9941 2.0177 0.7417 38 1 7.9531 4.2403 1.1932 39 1 7.2370 5.5102 3.1775 40 1 5.5577 4.5599 4.7073 41 1 4.5936 2.3404 4.2520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294017501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:39 Heat of formation + Delta-G solvation = -23.064929 kcal Electronic energy + Delta-G solvation = -24257.067319 eV Core-core repulsion = 20910.222666 eV Total energy + Delta-G solvation = -3346.844652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91005 -38.07475 -37.00321 -35.34263 -33.59380 -32.29392 -31.37157 -30.14047 -27.54326 -27.37471 -26.24448 -24.45718 -22.97340 -21.85355 -21.12488 -19.77980 -18.54285 -16.85563 -16.68488 -16.34454 -16.11874 -15.34937 -15.04378 -14.70028 -14.50520 -14.19699 -13.92736 -13.85621 -13.27330 -12.85583 -12.72330 -12.54264 -12.28129 -12.03435 -11.86514 -11.49804 -11.33598 -11.14717 -11.01146 -10.90325 -10.78704 -10.49583 -10.30779 -10.15769 -10.04726 -9.76713 -9.16116 -8.84630 -8.53984 -8.08118 -7.96696 -7.76494 -6.20471 -4.23247 1.97704 2.20354 2.52593 3.23575 3.27766 3.28228 3.37104 3.74945 4.21983 4.34245 4.62726 5.12674 5.21133 5.29111 5.36444 5.42525 5.52641 5.56145 5.61609 5.71304 5.73127 5.83790 5.85522 5.96656 6.16453 6.22601 6.32740 6.34117 6.61299 6.69193 6.75466 6.88961 6.97288 7.06904 7.13533 7.21058 7.28721 7.39346 7.54186 7.71225 7.75395 8.01773 8.28055 8.76816 8.95975 9.41905 10.85935 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.009017 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.507815 B = 3104.524998 C = 4652.057633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.144 3.856 4 N -0.588 5.588 5 C 0.233 3.767 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.077 3.923 9 N -0.891 5.891 10 Si 0.877 3.123 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.264 1.264 14 C 0.500 3.500 15 O -0.556 6.556 16 C 0.124 3.876 17 H 0.088 0.912 18 O -0.359 6.359 19 C 0.031 3.969 20 C -0.085 4.085 21 C -0.086 4.086 22 C -0.144 4.144 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.032 4.032 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -4.631 -1.006 5.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C 0.021 3.979 4 N -0.319 5.319 5 C 0.114 3.886 6 C -0.558 4.558 7 H 0.077 0.923 8 C -0.126 4.126 9 N -0.530 5.530 10 Si 0.705 3.295 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.188 1.188 14 C 0.287 3.713 15 O -0.436 6.436 16 C 0.063 3.937 17 H 0.106 0.894 18 O -0.276 6.276 19 C -0.066 4.066 20 C -0.086 4.086 21 C -0.104 4.104 22 C -0.162 4.162 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.050 4.050 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.931 -4.743 -1.445 6.327 hybrid contribution -0.418 1.072 0.172 1.164 sum 3.512 -3.670 -1.273 5.237 Atomic orbital electron populations 1.23767 0.95734 1.01556 1.01931 1.23385 0.96072 0.99289 0.98687 1.20394 0.92038 0.94729 0.90709 1.48229 1.12859 1.55233 1.15617 1.19609 0.96846 0.92972 0.79181 1.21320 1.42493 0.91688 1.00324 0.92257 1.24752 0.94575 0.98241 0.95063 1.69899 1.43301 1.35847 1.03965 0.86870 0.79758 0.85636 0.77268 1.20505 1.21307 1.18826 1.20936 0.82247 0.77978 0.90184 1.90597 1.75090 1.49870 1.28007 1.20741 0.88121 0.89224 0.95621 0.89434 1.87973 1.38334 1.16857 1.84472 1.22795 1.01511 0.83736 0.98545 1.19044 0.98961 0.93880 0.96711 1.20824 0.95969 0.95078 0.98570 1.20859 1.01754 0.95368 0.98197 1.21014 0.97953 0.98956 0.95227 1.20853 0.97224 0.95713 0.99920 1.20912 0.95068 0.93965 0.95105 0.88924 0.88394 0.87992 0.89575 0.90389 0.94733 0.94416 0.92545 0.94053 0.94156 0.89610 0.86532 0.87056 0.87296 0.86960 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 14.32 29.01 0.42 -2.33 16 2 C -0.16 -2.56 9.81 -36.03 -0.35 -2.92 16 3 C 0.14 2.72 5.86 -5.19 -0.03 2.69 16 4 N -0.59 -12.35 2.45 -176.43 -0.43 -12.78 16 5 C 0.23 5.26 4.64 -5.19 -0.02 5.24 16 6 C -0.52 -12.67 6.86 -34.44 -0.24 -12.91 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.08 1.88 4.53 -17.82 -0.08 1.80 16 9 N -0.89 -22.57 13.29 55.43 0.74 -21.84 16 10 Si 0.88 19.83 28.80 -169.99 -4.89 14.94 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 13 H -0.26 -5.84 7.07 56.52 0.40 -5.44 16 14 C 0.50 10.69 6.76 -10.99 -0.07 10.62 16 15 O -0.56 -13.02 16.20 -13.84 -0.22 -13.24 16 16 C 0.12 2.42 1.99 -29.03 -0.06 2.36 16 17 H 0.09 1.62 6.19 -51.93 -0.32 1.30 16 18 O -0.36 -6.68 9.58 -54.63 -0.52 -7.20 16 19 C 0.03 0.44 10.81 101.05 1.09 1.53 16 20 C -0.09 -1.71 4.25 -104.63 -0.44 -2.15 16 21 C -0.09 -1.68 9.28 -39.59 -0.37 -2.04 16 22 C -0.14 -2.54 10.05 -39.58 -0.40 -2.94 16 23 C -0.11 -2.02 10.05 -39.58 -0.40 -2.42 16 24 C -0.12 -2.28 9.02 -39.58 -0.36 -2.64 16 25 C -0.03 -0.65 5.93 -39.58 -0.23 -0.89 16 26 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.10 1.36 7.84 -52.49 -0.41 0.95 16 28 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.09 1.60 7.69 -51.93 -0.40 1.20 16 30 H 0.08 1.51 7.50 -51.93 -0.39 1.12 16 31 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 32 H 0.04 0.86 4.03 -51.93 -0.21 0.65 16 33 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.12 2.28 8.02 -52.49 -0.42 1.86 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 40 H 0.11 2.07 8.06 -52.49 -0.42 1.64 16 41 H 0.13 2.71 6.73 -52.49 -0.35 2.36 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -27.80 342.65 -7.58 -35.38 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.85 Total: 6.58 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.55 Total: -7.00 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.30 Total: -34.62 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.75 Total: -20.44 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.89 Total: 14.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.80 -7.58 -35.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294017501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.311 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds