Wall clock time and date at job start Tue Mar 31 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99781 * 2 1 4 4 N 1.46502 * 109.46858 * 125.43626 * 3 2 1 5 5 C 1.46496 * 119.99791 * 265.07714 * 4 3 2 6 6 C 1.50703 * 109.47331 * 275.71035 * 5 4 3 7 7 H 1.08001 * 119.99336 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00396 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99640 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00080 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47071 * 59.99974 * 10 8 6 12 12 H 1.48502 * 109.47149 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47249 * 299.99870 * 10 8 6 14 14 C 1.34770 * 119.99891 * 85.07641 * 4 3 2 15 15 O 1.21279 * 120.00277 * 5.42795 * 14 4 3 16 16 C 1.50705 * 120.00032 * 185.42159 * 14 4 3 17 17 H 1.09007 * 109.46627 * 44.22231 * 16 14 4 18 18 O 1.42898 * 109.47074 * 164.22063 * 16 14 4 19 19 C 1.42904 * 113.99913 * 270.00197 * 18 16 14 20 20 C 1.50700 * 109.47142 * 284.22130 * 16 14 4 21 21 C 1.38232 * 119.99945 * 288.63798 * 20 16 14 22 22 C 1.38233 * 119.99916 * 179.81358 * 21 20 16 23 23 C 1.38242 * 119.99944 * 0.39245 * 22 21 20 24 24 C 1.38235 * 120.00020 * 359.86318 * 23 22 21 25 25 C 1.38236 * 119.99724 * 108.91174 * 20 16 14 26 26 H 1.08002 * 119.99370 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00139 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00106 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47070 * 5.43916 * 3 2 1 30 30 H 1.08994 * 109.47348 * 245.43667 * 3 2 1 31 31 H 1.08998 * 109.47456 * 35.71467 * 5 4 3 32 32 H 1.09002 * 109.47159 * 155.71304 * 5 4 3 33 33 H 0.96994 * 119.99625 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47197 * 300.00317 * 19 18 16 35 35 H 1.09000 * 109.47422 * 59.99934 * 19 18 16 36 36 H 1.09006 * 109.47169 * 180.02562 * 19 18 16 37 37 H 1.07994 * 119.99956 * 0.02562 * 21 20 16 38 38 H 1.07997 * 120.00344 * 180.23228 * 22 21 20 39 39 H 1.08003 * 120.00098 * 179.83401 * 23 22 21 40 40 H 1.07993 * 120.00455 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.00163 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0012 1.3276 1.1254 5 6 2.6112 1.9532 2.3914 6 6 2.8651 3.4368 2.3178 7 1 3.2755 3.8704 1.4178 8 6 2.5734 4.2407 3.3994 9 7 2.0741 3.7125 4.4955 10 14 2.8874 6.0798 3.3078 11 1 2.0883 6.6639 2.2009 12 1 2.4922 6.7139 4.5912 13 1 4.3309 6.3237 3.0586 14 6 4.2226 0.7728 0.9960 15 8 4.5826 0.3430 -0.0794 16 6 5.1411 0.6865 2.1877 17 1 4.5770 0.3499 3.0575 18 8 6.1919 -0.2421 1.9129 19 6 5.8925 -1.5873 2.2912 20 6 5.7313 2.0448 2.4664 21 6 6.6779 2.5760 1.6104 22 6 7.2164 3.8236 1.8639 23 6 6.8143 4.5366 2.9780 24 6 5.8716 4.0031 3.8368 25 6 5.3302 2.7571 3.5811 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3592 2.1313 0.0974 30 1 2.6151 1.4062 -0.9346 31 1 1.5515 1.7745 2.5737 32 1 3.1971 1.5242 3.2043 33 1 1.8692 4.2780 5.2565 34 1 5.6987 -1.6286 3.3630 35 1 5.0109 -1.9295 1.7493 36 1 6.7396 -2.2296 2.0504 37 1 6.9941 2.0177 0.7417 38 1 7.9531 4.2403 1.1932 39 1 7.2370 5.5102 3.1775 40 1 5.5577 4.5599 4.7073 41 1 4.5936 2.3404 4.2520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294017501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:38 Heat of formation + Delta-G solvation = -36.422820 kcal Electronic energy + Delta-G solvation = -24257.646560 eV Core-core repulsion = 20910.222666 eV Total energy + Delta-G solvation = -3347.423894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.49890 -39.60620 -38.43540 -37.00306 -35.18265 -34.01755 -32.81436 -31.62295 -29.31164 -28.84157 -27.58028 -25.94660 -24.79611 -23.33199 -22.61606 -21.12944 -20.11903 -18.52271 -18.38887 -17.86191 -17.75781 -16.82639 -16.51439 -16.37027 -16.04467 -15.71563 -15.35532 -15.24657 -14.76337 -14.28405 -14.25319 -14.24314 -13.89449 -13.62770 -13.25756 -13.07411 -12.98593 -12.79605 -12.58755 -12.37950 -12.26216 -12.09427 -11.94846 -11.74469 -11.57435 -11.55467 -10.59049 -10.48545 -10.21835 -9.59817 -9.52527 -9.42348 -8.11737 -6.18838 0.49955 0.71970 1.25197 1.43116 1.46458 1.51668 1.65002 2.24574 2.47615 2.79250 3.12571 3.21335 3.67630 3.81399 3.93512 4.06327 4.18329 4.22703 4.27366 4.40771 4.47471 4.49637 4.52552 4.75522 4.76236 4.78568 4.85540 4.92019 5.00746 5.16600 5.21301 5.28989 5.59742 5.64872 5.66784 5.73792 5.79627 5.81164 5.88774 6.05717 6.12524 6.25098 6.54975 6.85127 7.25016 7.49104 8.93812 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.009017 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.507815 B = 3104.524998 C = 4652.057633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.142 3.858 4 N -0.590 5.590 5 C 0.249 3.751 6 C -0.519 4.519 7 H 0.039 0.961 8 C 0.055 3.945 9 N -0.909 5.909 10 Si 0.914 3.086 11 H -0.288 1.288 12 H -0.284 1.284 13 H -0.253 1.253 14 C 0.497 3.503 15 O -0.581 6.581 16 C 0.129 3.871 17 H 0.093 0.907 18 O -0.375 6.375 19 C 0.023 3.977 20 C -0.097 4.097 21 C -0.102 4.102 22 C -0.138 4.138 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.042 4.042 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 -4.233 -0.862 5.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.200 4.200 3 C 0.020 3.980 4 N -0.321 5.321 5 C 0.129 3.871 6 C -0.557 4.557 7 H 0.058 0.942 8 C -0.147 4.147 9 N -0.548 5.548 10 Si 0.740 3.260 11 H -0.214 1.214 12 H -0.210 1.210 13 H -0.177 1.177 14 C 0.285 3.715 15 O -0.462 6.462 16 C 0.068 3.932 17 H 0.110 0.890 18 O -0.293 6.293 19 C -0.073 4.073 20 C -0.098 4.098 21 C -0.120 4.120 22 C -0.156 4.156 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.061 4.061 26 H 0.138 0.862 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.199 -4.352 -1.301 6.186 hybrid contribution -0.536 0.916 0.101 1.066 sum 3.663 -3.436 -1.200 5.164 Atomic orbital electron populations 1.24028 0.94847 1.03139 0.97998 1.23149 0.96780 0.97767 1.02272 1.20465 0.91742 0.96265 0.89511 1.48275 1.13302 1.54835 1.15640 1.19313 0.95687 0.92239 0.79868 1.21225 1.42461 0.92483 0.99563 0.94237 1.25094 0.94335 1.00489 0.94741 1.69949 1.43832 1.36700 1.04291 0.86297 0.80047 0.82726 0.76901 1.21410 1.20962 1.17724 1.21300 0.82350 0.77392 0.90468 1.90568 1.75532 1.51043 1.29106 1.20643 0.88070 0.89709 0.94735 0.88984 1.87944 1.38122 1.18417 1.84810 1.23068 1.02475 0.82079 0.99685 1.19155 0.99393 0.94200 0.97006 1.20936 0.96463 0.96090 0.98501 1.21204 1.01556 0.94428 0.98421 1.21353 0.97202 1.00057 0.94587 1.21039 0.97681 0.95473 1.00525 1.20803 0.95387 0.94659 0.95207 0.86198 0.87784 0.88415 0.89738 0.91485 0.96251 0.94538 0.92466 0.92176 0.94856 0.87001 0.87158 0.84031 0.84334 0.86448 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 14.32 67.77 0.97 -3.37 16 2 C -0.18 -5.89 9.81 25.64 0.25 -5.64 16 3 C 0.14 5.45 5.86 85.63 0.50 5.95 16 4 N -0.59 -25.17 2.45 -830.51 -2.04 -27.21 16 5 C 0.25 11.37 4.64 85.63 0.40 11.77 16 6 C -0.52 -25.39 6.86 25.60 0.18 -25.21 16 7 H 0.04 2.08 7.81 -2.91 -0.02 2.06 16 8 C 0.05 2.67 4.53 84.65 0.38 3.05 16 9 N -0.91 -45.68 13.29 21.45 0.28 -45.40 16 10 Si 0.91 39.67 28.80 68.60 1.98 41.64 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.25 -10.50 7.07 99.48 0.70 -9.80 16 14 C 0.50 21.61 6.76 87.66 0.59 22.20 16 15 O -0.58 -27.69 16.20 15.52 0.25 -27.44 16 16 C 0.13 5.10 1.99 29.10 0.06 5.15 16 17 H 0.09 3.46 6.19 -2.38 -0.01 3.44 16 18 O -0.38 -13.90 9.58 -130.43 -1.25 -15.15 16 19 C 0.02 0.63 10.81 113.37 1.23 1.86 16 20 C -0.10 -3.88 4.25 -19.87 -0.08 -3.97 16 21 C -0.10 -3.90 9.28 22.27 0.21 -3.69 16 22 C -0.14 -4.61 10.05 22.27 0.22 -4.39 16 23 C -0.11 -3.79 10.05 22.27 0.22 -3.56 16 24 C -0.13 -4.79 9.02 22.27 0.20 -4.59 16 25 C -0.04 -1.69 5.93 22.27 0.13 -1.56 16 26 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.10 2.67 7.84 -2.91 -0.02 2.64 16 28 H 0.10 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.08 3.18 7.69 -2.39 -0.02 3.16 16 30 H 0.07 2.66 7.50 -2.39 -0.02 2.65 16 31 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 32 H 0.04 1.69 4.03 -2.39 -0.01 1.68 16 33 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 34 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.11 4.31 8.02 -2.91 -0.02 4.29 16 38 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.12 4.88 6.73 -2.91 -0.02 4.86 16 Total: -1.00 -58.49 342.65 5.69 -52.81 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 1.00 Total: 26.72 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.46 Total: -5.98 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.75 Total: -72.61 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.00 Total: -42.58 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.98 Total: 41.64 kcal Total: -58.49 5.69 -52.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294017501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.384 kcal (2) G-P(sol) polarization free energy of solvation -58.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds