Wall clock time and date at job start Tue Mar 31 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00090 * 2 1 4 4 H 1.09000 * 109.47223 * 22.06540 * 3 2 1 5 5 C 1.52997 * 109.47467 * 142.06936 * 3 2 1 6 6 N 1.46499 * 109.47229 * 299.99735 * 5 3 2 7 7 C 1.34774 * 120.00117 * 179.97438 * 6 5 3 8 8 O 1.21586 * 120.00281 * 0.02562 * 7 6 5 9 9 C 1.47646 * 119.99960 * 179.97438 * 7 6 5 10 10 C 1.40020 * 119.89287 * 359.72841 * 9 7 6 11 11 C 1.36319 * 120.10456 * 179.71541 * 10 9 7 12 12 C 1.40892 * 119.88914 * 0.57760 * 11 10 9 13 13 C 1.41105 * 120.09999 * 179.67392 * 12 11 10 14 14 H 1.08002 * 120.00147 * 153.85830 * 13 12 11 15 15 C 1.40228 * 120.00171 * 333.85718 * 13 12 11 16 16 N 1.30646 * 119.99988 * 342.05693 * 15 13 12 17 17 Si 1.86802 * 119.99983 * 162.05980 * 15 13 12 18 18 H 1.48499 * 109.46900 * 94.97036 * 17 15 13 19 19 H 1.48497 * 109.47276 * 214.97179 * 17 15 13 20 20 H 1.48503 * 109.47004 * 334.97441 * 17 15 13 21 21 C 1.40882 * 119.79568 * 359.69793 * 12 11 10 22 22 C 1.36323 * 119.89069 * 359.97438 * 21 12 11 23 23 C 1.53012 * 109.46967 * 262.06764 * 3 2 1 24 24 C 1.53000 * 117.49288 * 11.59321 * 23 3 2 25 25 C 1.52997 * 117.49699 * 302.93766 * 23 3 2 26 26 H 1.08994 * 109.46768 * 62.35336 * 1 2 3 27 27 H 1.09007 * 109.46817 * 182.35359 * 1 2 3 28 28 H 1.08992 * 109.46878 * 302.35245 * 1 2 3 29 29 H 1.09004 * 109.47492 * 60.00029 * 5 3 2 30 30 H 1.09001 * 109.47439 * 179.97438 * 5 3 2 31 31 H 0.97002 * 119.99405 * 359.97438 * 6 5 3 32 32 H 1.07998 * 119.94572 * 359.97438 * 10 9 7 33 33 H 1.07999 * 120.05460 * 180.25371 * 11 10 9 34 34 H 0.96997 * 120.00122 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.05834 * 179.97438 * 21 12 11 36 36 H 1.08007 * 119.94288 * 180.02562 * 22 21 12 37 37 H 1.08999 * 115.54855 * 157.26253 * 23 3 2 38 38 H 1.08996 * 117.50378 * 0.02562 * 24 23 3 39 39 H 1.09003 * 117.49590 * 145.02549 * 24 23 3 40 40 H 1.09004 * 117.49763 * 214.98219 * 25 23 3 41 41 H 1.09004 * 117.50123 * 359.97225 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2880 2.0248 0.3861 5 6 3.2571 1.3086 0.8867 6 7 2.8844 0.9401 2.2547 7 6 3.8269 0.8765 3.2160 8 8 4.9864 1.1254 2.9480 9 6 3.4512 0.5057 4.5948 10 6 2.1141 0.2261 4.9025 11 6 1.7633 -0.1224 6.1729 12 6 2.7468 -0.1891 7.1796 13 6 2.3875 -0.5426 8.4976 14 1 3.1155 -0.9991 9.1517 15 6 1.0851 -0.3012 8.9580 16 7 0.3156 0.5451 8.3269 17 14 0.4507 -1.1897 10.4737 18 1 0.6528 -0.3336 11.6702 19 1 -0.9970 -1.4770 10.3094 20 1 1.1919 -2.4648 10.6466 21 6 4.0898 0.0988 6.8664 22 6 4.4321 0.4398 5.5916 23 6 2.3995 1.6904 -1.4288 24 6 1.8785 0.8079 -2.5649 25 6 3.3579 0.7598 -2.1749 26 1 -0.3633 0.4768 -0.9103 27 1 -0.3633 -1.0269 0.0422 28 1 -0.3633 0.5499 0.8681 29 1 3.9794 0.5894 0.5006 30 1 3.7007 2.3043 0.8863 31 1 1.9592 0.7419 2.4686 32 1 1.3603 0.2825 4.1313 33 1 0.7324 -0.3418 6.4084 34 1 -0.5852 0.7124 8.6456 35 1 4.8470 0.0493 7.6348 36 1 5.4616 0.6602 5.3505 37 1 2.4850 2.7599 -1.6208 38 1 1.2581 -0.0465 -2.2946 39 1 1.6215 1.2969 -3.5046 40 1 4.0736 1.2172 -2.8580 41 1 3.7114 -0.1263 -1.6477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294583505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:29 Heat of formation + Delta-G solvation = -47.489815 kcal Electronic energy + Delta-G solvation = -22254.613460 eV Core-core repulsion = 18906.709665 eV Total energy + Delta-G solvation = -3347.903795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.63415 -38.66931 -37.04084 -35.96290 -34.10399 -33.84132 -30.63156 -29.46756 -29.21173 -26.54607 -25.83675 -23.83991 -22.45394 -21.63901 -20.90380 -20.42727 -19.44594 -17.51156 -17.18038 -16.81266 -16.37242 -15.50602 -15.31541 -14.68572 -14.67843 -14.36461 -13.99484 -13.63275 -13.44929 -13.16706 -12.73257 -12.54524 -12.18573 -12.05693 -11.95653 -11.74786 -11.55381 -11.39100 -11.27623 -11.22402 -10.95814 -10.61889 -10.57118 -10.15752 -10.04403 -9.79503 -9.53922 -9.34190 -8.92847 -8.53910 -7.70177 -7.51589 -7.02569 -4.58590 2.25671 2.91216 2.95244 3.01721 3.04734 3.50811 3.58770 3.75123 3.86897 3.90987 4.57054 4.59194 4.72158 4.76116 5.04612 5.11393 5.25698 5.29100 5.30926 5.51142 5.56561 5.58051 5.72061 5.77127 5.88516 5.97362 6.05602 6.06129 6.19920 6.33535 6.78193 6.84415 6.95697 7.03837 7.08701 7.14432 7.45381 7.66935 7.79979 7.87409 8.08796 8.28172 8.41127 8.64488 8.76657 9.11752 9.90477 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.003265 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.717297 B = 8572.777190 C = 9451.998014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.106 3.894 4 H 0.072 0.928 5 C 0.129 3.871 6 N -0.737 5.737 7 C 0.572 3.428 8 O -0.577 6.577 9 C -0.282 4.282 10 C -0.062 4.062 11 C -0.177 4.177 12 C 0.130 3.870 13 C -0.445 4.445 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.774 5.774 17 Si 0.912 3.088 18 H -0.268 1.268 19 H -0.273 1.273 20 H -0.257 1.257 21 C -0.238 4.238 22 C -0.022 4.022 23 C -0.180 4.180 24 C -0.171 4.171 25 C -0.167 4.167 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.397 0.603 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 0.833 -13.976 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.293 6.293 3 C 0.048 3.952 4 H 0.090 0.910 5 C 0.005 3.995 6 N -0.390 5.390 7 C 0.366 3.634 8 O -0.459 6.459 9 C -0.286 4.286 10 C -0.081 4.081 11 C -0.196 4.196 12 C 0.127 3.873 13 C -0.473 4.473 14 H 0.103 0.897 15 C -0.146 4.146 16 N -0.397 5.397 17 Si 0.735 3.265 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.181 1.181 21 C -0.258 4.258 22 C -0.041 4.041 23 C -0.199 4.199 24 C -0.208 4.208 25 C -0.204 4.204 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.232 0.768 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.643 0.965 -14.170 14.662 hybrid contribution -1.139 -0.048 0.687 1.332 sum -4.783 0.917 -13.482 14.335 Atomic orbital electron populations 1.22881 0.81091 1.02928 1.00084 1.87972 1.19569 1.27071 1.94699 1.21875 0.95137 0.85252 0.92928 0.90951 1.21273 0.95349 1.01208 0.81663 1.45770 1.11777 1.73095 1.08356 1.18571 0.84259 0.75283 0.85251 1.90630 1.19389 1.52461 1.83418 1.18914 0.94706 1.22878 0.92132 1.20458 0.93473 0.97929 0.96220 1.20923 1.00032 1.07153 0.91525 1.17775 0.91012 0.85544 0.92990 1.19823 0.96023 1.33772 0.97695 0.89732 1.26081 0.96396 0.93197 0.98893 1.69746 1.08677 1.23818 1.37456 0.86231 0.78674 0.80875 0.80703 1.19272 1.19769 1.18093 1.20733 0.96781 1.12521 0.95729 1.20370 0.97084 0.94434 0.92258 1.22751 1.06692 0.97653 0.92772 1.22927 0.97725 1.02424 0.97695 1.22898 0.92617 1.01935 1.02983 0.93986 0.89542 0.93734 0.91195 0.90815 0.76786 0.89439 0.86469 0.90310 0.88362 0.88085 0.87078 0.88028 0.89223 0.88957 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.17 101.05 1.03 1.27 16 2 O -0.37 -4.54 8.75 -35.23 -0.31 -4.84 16 3 C 0.11 1.22 2.66 -26.73 -0.07 1.14 16 4 H 0.07 0.75 7.67 -51.93 -0.40 0.36 16 5 C 0.13 1.90 5.24 -4.04 -0.02 1.87 16 6 N -0.74 -12.85 5.40 -61.31 -0.33 -13.18 16 7 C 0.57 12.52 7.76 -12.42 -0.10 12.43 16 8 O -0.58 -14.08 16.32 5.29 0.09 -13.99 16 9 C -0.28 -6.57 5.89 -104.73 -0.62 -7.19 16 10 C -0.06 -1.38 9.47 -39.60 -0.38 -1.76 16 11 C -0.18 -4.36 8.62 -39.27 -0.34 -4.70 16 12 C 0.13 3.34 5.56 -106.80 -0.59 2.74 16 13 C -0.45 -11.14 9.04 -37.75 -0.34 -11.48 16 14 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 15 C 0.08 1.76 5.12 -17.31 -0.09 1.67 16 16 N -0.77 -18.58 11.06 55.56 0.61 -17.97 16 17 Si 0.91 17.31 29.60 -169.99 -5.03 12.28 16 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 21 C -0.24 -5.83 9.73 -39.27 -0.38 -6.22 16 22 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 23 C -0.18 -1.75 5.81 -90.61 -0.53 -2.28 16 24 C -0.17 -1.53 9.60 -26.70 -0.26 -1.79 16 25 C -0.17 -1.65 9.68 -26.70 -0.26 -1.90 16 26 H 0.04 0.33 7.50 -51.93 -0.39 -0.06 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.39 8.06 -51.93 -0.42 -0.02 16 29 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.40 6.34 6.35 -40.82 -0.26 6.08 16 32 H 0.09 1.68 6.37 -52.49 -0.33 1.34 16 33 H 0.12 2.91 6.27 -52.49 -0.33 2.58 16 34 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 35 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.10 2.34 7.63 -52.48 -0.40 1.94 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 0.97 6.23 -51.93 -0.32 0.64 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.12 7.80 -51.93 -0.40 0.71 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -28.90 342.64 -8.85 -37.75 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.73 Total: 11.89 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -3.32 Total: -17.10 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.28 Total: -31.15 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.22 Total: -18.83 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.90 -8.85 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294583505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.739 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds