Wall clock time and date at job start Tue Mar 31 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00090 * 2 1 4 4 H 1.09000 * 109.47223 * 22.06540 * 3 2 1 5 5 C 1.52997 * 109.47467 * 142.06936 * 3 2 1 6 6 N 1.46499 * 109.47229 * 299.99735 * 5 3 2 7 7 C 1.34774 * 120.00117 * 179.97438 * 6 5 3 8 8 O 1.21586 * 120.00281 * 0.02562 * 7 6 5 9 9 C 1.47646 * 119.99960 * 179.97438 * 7 6 5 10 10 C 1.40020 * 119.89287 * 359.72841 * 9 7 6 11 11 C 1.36319 * 120.10456 * 179.71541 * 10 9 7 12 12 C 1.40892 * 119.88914 * 0.57760 * 11 10 9 13 13 C 1.41105 * 120.09999 * 179.67392 * 12 11 10 14 14 H 1.08002 * 120.00147 * 153.85830 * 13 12 11 15 15 C 1.40228 * 120.00171 * 333.85718 * 13 12 11 16 16 N 1.30646 * 119.99988 * 342.05693 * 15 13 12 17 17 Si 1.86802 * 119.99983 * 162.05980 * 15 13 12 18 18 H 1.48499 * 109.46900 * 94.97036 * 17 15 13 19 19 H 1.48497 * 109.47276 * 214.97179 * 17 15 13 20 20 H 1.48503 * 109.47004 * 334.97441 * 17 15 13 21 21 C 1.40882 * 119.79568 * 359.69793 * 12 11 10 22 22 C 1.36323 * 119.89069 * 359.97438 * 21 12 11 23 23 C 1.53012 * 109.46967 * 262.06764 * 3 2 1 24 24 C 1.53000 * 117.49288 * 11.59321 * 23 3 2 25 25 C 1.52997 * 117.49699 * 302.93766 * 23 3 2 26 26 H 1.08994 * 109.46768 * 62.35336 * 1 2 3 27 27 H 1.09007 * 109.46817 * 182.35359 * 1 2 3 28 28 H 1.08992 * 109.46878 * 302.35245 * 1 2 3 29 29 H 1.09004 * 109.47492 * 60.00029 * 5 3 2 30 30 H 1.09001 * 109.47439 * 179.97438 * 5 3 2 31 31 H 0.97002 * 119.99405 * 359.97438 * 6 5 3 32 32 H 1.07998 * 119.94572 * 359.97438 * 10 9 7 33 33 H 1.07999 * 120.05460 * 180.25371 * 11 10 9 34 34 H 0.96997 * 120.00122 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.05834 * 179.97438 * 21 12 11 36 36 H 1.08007 * 119.94288 * 180.02562 * 22 21 12 37 37 H 1.08999 * 115.54855 * 157.26253 * 23 3 2 38 38 H 1.08996 * 117.50378 * 0.02562 * 24 23 3 39 39 H 1.09003 * 117.49590 * 145.02549 * 24 23 3 40 40 H 1.09004 * 117.49763 * 214.98219 * 25 23 3 41 41 H 1.09004 * 117.50123 * 359.97225 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2880 2.0248 0.3861 5 6 3.2571 1.3086 0.8867 6 7 2.8844 0.9401 2.2547 7 6 3.8269 0.8765 3.2160 8 8 4.9864 1.1254 2.9480 9 6 3.4512 0.5057 4.5948 10 6 2.1141 0.2261 4.9025 11 6 1.7633 -0.1224 6.1729 12 6 2.7468 -0.1891 7.1796 13 6 2.3875 -0.5426 8.4976 14 1 3.1155 -0.9991 9.1517 15 6 1.0851 -0.3012 8.9580 16 7 0.3156 0.5451 8.3269 17 14 0.4507 -1.1897 10.4737 18 1 0.6528 -0.3336 11.6702 19 1 -0.9970 -1.4770 10.3094 20 1 1.1919 -2.4648 10.6466 21 6 4.0898 0.0988 6.8664 22 6 4.4321 0.4398 5.5916 23 6 2.3995 1.6904 -1.4288 24 6 1.8785 0.8079 -2.5649 25 6 3.3579 0.7598 -2.1749 26 1 -0.3633 0.4768 -0.9103 27 1 -0.3633 -1.0269 0.0422 28 1 -0.3633 0.5499 0.8681 29 1 3.9794 0.5894 0.5006 30 1 3.7007 2.3043 0.8863 31 1 1.9592 0.7419 2.4686 32 1 1.3603 0.2825 4.1313 33 1 0.7324 -0.3418 6.4084 34 1 -0.5852 0.7124 8.6456 35 1 4.8470 0.0493 7.6348 36 1 5.4616 0.6602 5.3505 37 1 2.4850 2.7599 -1.6208 38 1 1.2581 -0.0465 -2.2946 39 1 1.6215 1.2969 -3.5046 40 1 4.0736 1.2172 -2.8580 41 1 3.7114 -0.1263 -1.6477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294583505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:28 Heat of formation + Delta-G solvation = -63.712795 kcal Electronic energy + Delta-G solvation = -22255.316941 eV Core-core repulsion = 18906.709665 eV Total energy + Delta-G solvation = -3348.607276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94913 -39.98209 -38.82939 -36.74880 -35.66046 -35.58695 -32.30574 -31.32238 -30.53318 -27.82175 -27.09417 -25.05008 -23.53893 -23.02778 -22.70549 -21.56046 -20.86631 -19.36282 -18.58189 -17.89978 -17.41537 -17.11735 -16.64529 -15.97664 -15.86967 -15.73524 -15.42181 -15.05657 -15.02384 -14.43210 -14.30704 -13.93616 -13.79944 -13.65606 -13.21676 -12.97840 -12.84869 -12.68725 -12.62488 -12.35698 -12.26934 -12.10821 -11.78216 -11.37735 -11.29765 -11.12243 -10.98038 -10.78970 -10.51952 -10.07533 -9.57650 -9.39610 -8.79470 -6.47940 0.43936 1.14407 1.38959 1.42713 1.55345 2.11869 2.18864 2.32749 2.73515 2.79905 2.87536 3.68589 3.76429 3.85944 3.94712 4.20510 4.23871 4.30469 4.37817 4.43510 4.44736 4.54127 4.60857 4.64430 4.82060 4.86508 4.91548 4.93711 5.02913 5.04027 5.14935 5.23393 5.29259 5.33316 5.54006 5.59668 5.81357 5.93352 5.99273 6.22580 6.22776 6.53573 6.69330 6.77128 6.88629 7.43041 8.16834 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.003265 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.717297 B = 8572.777190 C = 9451.998014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.113 3.887 4 H 0.088 0.912 5 C 0.127 3.873 6 N -0.720 5.720 7 C 0.570 3.430 8 O -0.607 6.607 9 C -0.293 4.293 10 C -0.052 4.052 11 C -0.195 4.195 12 C 0.103 3.897 13 C -0.476 4.476 14 H 0.085 0.915 15 C 0.039 3.961 16 N -0.799 5.799 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.261 1.261 20 H -0.258 1.258 21 C -0.253 4.253 22 C -0.033 4.033 23 C -0.182 4.182 24 C -0.158 4.158 25 C -0.179 4.179 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.406 0.594 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.297 0.703 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 1.004 -14.753 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.315 6.315 3 C 0.055 3.945 4 H 0.106 0.894 5 C 0.004 3.996 6 N -0.372 5.372 7 C 0.364 3.636 8 O -0.492 6.492 9 C -0.298 4.298 10 C -0.071 4.071 11 C -0.215 4.215 12 C 0.100 3.900 13 C -0.503 4.503 14 H 0.103 0.897 15 C -0.180 4.180 16 N -0.422 5.422 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.185 1.185 20 H -0.182 1.182 21 C -0.272 4.272 22 C -0.052 4.052 23 C -0.201 4.201 24 C -0.195 4.195 25 C -0.216 4.216 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.242 0.758 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.504 1.143 -14.984 16.004 hybrid contribution -0.568 -0.081 0.857 1.031 sum -6.072 1.062 -14.128 15.414 Atomic orbital electron populations 1.23046 0.79573 1.03736 1.01114 1.87946 1.21264 1.27420 1.94861 1.21793 0.93849 0.85558 0.93326 0.89442 1.21452 0.97079 1.00715 0.80400 1.45634 1.11373 1.71352 1.08794 1.18420 0.84422 0.75310 0.85485 1.90609 1.20703 1.54003 1.83856 1.19192 0.94971 1.22627 0.92987 1.20690 0.93871 0.96246 0.96320 1.20959 0.99659 1.08566 0.92280 1.18126 0.91667 0.86275 0.93927 1.20099 0.97475 1.34868 0.97833 0.89680 1.26910 0.95825 0.93352 1.01919 1.69760 1.09362 1.24185 1.38906 0.85117 0.78336 0.79307 0.76614 1.18605 1.18521 1.18156 1.20877 0.96915 1.13160 0.96253 1.20513 0.97551 0.94619 0.92510 1.22782 1.06850 0.98576 0.91851 1.22971 0.96622 1.01894 0.97998 1.22906 0.93644 1.01513 1.03509 0.92362 0.88899 0.93322 0.92653 0.90589 0.75757 0.86131 0.86988 0.89174 0.87718 0.87938 0.85411 0.88579 0.87289 0.87721 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.17 113.37 1.15 1.50 16 2 O -0.40 -8.89 8.75 -148.98 -1.30 -10.20 16 3 C 0.11 2.36 2.66 30.60 0.08 2.44 16 4 H 0.09 1.57 7.67 -2.39 -0.02 1.56 16 5 C 0.13 3.60 5.24 86.38 0.45 4.05 16 6 N -0.72 -24.36 5.40 -466.16 -2.52 -26.87 16 7 C 0.57 24.88 7.76 86.73 0.67 25.55 16 8 O -0.61 -29.87 16.32 -3.99 -0.07 -29.94 16 9 C -0.29 -13.73 5.89 -19.93 -0.12 -13.84 16 10 C -0.05 -2.33 9.47 22.25 0.21 -2.12 16 11 C -0.20 -9.71 8.62 22.47 0.19 -9.51 16 12 C 0.10 5.41 5.56 -21.28 -0.12 5.29 16 13 C -0.48 -24.13 9.04 23.46 0.21 -23.92 16 14 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 15 C 0.04 1.81 5.12 85.35 0.44 2.25 16 16 N -0.80 -38.08 11.06 21.87 0.24 -37.83 16 17 Si 0.99 34.73 29.60 68.60 2.03 36.76 16 18 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 19 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 20 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 21 C -0.25 -12.72 9.73 22.47 0.22 -12.50 16 22 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 23 C -0.18 -3.14 5.81 -10.79 -0.06 -3.20 16 24 C -0.16 -2.45 9.60 30.62 0.29 -2.15 16 25 C -0.18 -3.27 9.68 30.62 0.30 -2.97 16 26 H 0.06 0.75 7.50 -2.39 -0.02 0.73 16 27 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.05 0.74 8.06 -2.39 -0.02 0.72 16 29 H 0.06 1.75 7.48 -2.39 -0.02 1.73 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.41 12.23 6.35 -92.71 -0.59 11.64 16 32 H 0.12 4.42 6.37 -2.91 -0.02 4.40 16 33 H 0.11 5.61 6.27 -2.91 -0.02 5.59 16 34 H 0.30 12.53 8.29 -92.71 -0.77 11.76 16 35 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 36 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 37 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.10 1.62 6.23 -2.39 -0.01 1.60 16 39 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 1.78 7.80 -2.38 -0.02 1.76 16 Total: -1.00 -62.52 342.64 2.98 -59.54 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.45 Total: 39.07 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 4.14 Total: -30.53 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -2.27 Total: -64.71 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.37 Total: -40.13 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -62.52 2.98 -59.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294583505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.170 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds