Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42106 * 108.57675 * 2 1 4 4 O 1.42101 * 108.58038 * 228.97565 * 2 1 3 5 5 C 1.81400 * 101.92175 * 114.48461 * 2 1 3 6 6 C 1.52997 * 109.46980 * 180.02562 * 5 2 1 7 7 C 1.53120 * 109.52109 * 175.00205 * 6 5 2 8 8 C 1.53039 * 109.27940 * 177.62498 * 7 6 5 9 9 N 1.46844 * 109.52178 * 300.81941 * 8 7 6 10 10 C 1.46901 * 111.00526 * 185.84060 * 9 8 7 11 11 C 1.52992 * 109.47859 * 170.00090 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.46848 * 111.20087 * 61.74385 * 9 8 7 22 22 C 1.53048 * 109.52064 * 298.25789 * 21 9 8 23 23 H 1.08998 * 109.47922 * 305.51555 * 1 2 3 24 24 H 1.09003 * 109.47573 * 65.51472 * 1 2 3 25 25 H 1.09004 * 109.47107 * 185.51324 * 1 2 3 26 26 H 1.09003 * 109.46602 * 59.99996 * 5 2 1 27 27 H 1.08998 * 109.47018 * 300.00149 * 5 2 1 28 28 H 1.09002 * 109.52644 * 54.87884 * 6 5 2 29 29 H 1.09004 * 109.50479 * 57.68087 * 7 6 5 30 30 H 1.08998 * 109.50625 * 297.56400 * 7 6 5 31 31 H 1.09003 * 109.46575 * 180.80459 * 8 7 6 32 32 H 1.08995 * 109.45502 * 60.82603 * 8 7 6 33 33 H 1.09002 * 109.46980 * 49.99749 * 10 9 8 34 34 H 1.09001 * 109.46628 * 290.00171 * 10 9 8 35 35 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 36 36 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 39 39 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.46339 * 58.26808 * 21 9 8 41 41 H 1.08994 * 109.46869 * 178.24483 * 21 9 8 42 42 H 1.08998 * 109.49998 * 299.23732 * 22 21 9 43 43 H 1.08994 * 109.50211 * 179.11499 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7984 7 6 4.0237 -1.3224 3.2088 8 6 5.5398 -1.4595 3.3662 9 7 6.0542 -2.4004 2.3630 10 6 7.4844 -2.6631 2.5719 11 6 7.9258 -3.8235 1.6780 12 6 9.4155 -4.0966 1.8952 13 6 9.8502 -5.2401 1.0151 14 1 9.1355 -5.7234 0.3654 15 6 11.1605 -5.6685 1.0384 16 7 11.5399 -6.6661 0.2700 17 14 12.3967 -4.8320 2.1616 18 1 12.4100 -5.5161 3.4796 19 1 13.7487 -4.9062 1.5519 20 1 12.0143 -3.4091 2.3462 21 6 5.8021 -1.9143 1.0004 22 6 4.2938 -1.7907 0.7724 23 1 -0.3635 0.5970 0.8364 24 1 -0.3634 0.4259 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.7609 -1.7369 1.6664 27 1 1.7610 -0.1170 2.4042 28 1 4.1438 0.1696 1.6572 29 1 3.5525 -2.2931 3.3633 30 1 3.6444 -0.6122 3.9434 31 1 5.7691 -1.8319 4.3646 32 1 6.0089 -0.4859 3.2251 33 1 7.6573 -2.9229 3.6163 34 1 8.0581 -1.7713 2.3196 35 1 7.7529 -3.5638 0.6336 36 1 7.3520 -4.7152 1.9303 37 1 9.5888 -4.3562 2.9396 38 1 9.9890 -3.2047 1.6425 39 1 12.4616 -6.9677 0.2867 40 1 6.2701 -0.9385 0.8706 41 1 6.2218 -2.6169 0.2806 42 1 3.8269 -2.7688 0.8886 43 1 4.1074 -1.4150 -0.2336 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310118382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = -84.471288 kcal Electronic energy + Delta-G solvation = -21368.359806 eV Core-core repulsion = 18154.296326 eV Total energy + Delta-G solvation = -3214.063481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.28983 -37.29476 -36.37008 -35.57414 -33.41055 -31.59765 -30.86737 -30.14827 -28.80168 -26.25480 -23.45920 -23.06515 -21.51582 -19.87572 -19.82757 -19.17127 -17.07713 -16.70595 -16.46406 -16.42346 -15.60544 -15.14210 -14.69364 -14.32933 -14.15171 -13.90234 -13.80749 -13.64661 -13.55162 -13.15312 -12.74807 -12.61865 -12.37590 -12.27940 -12.06851 -11.90975 -11.58749 -11.42331 -11.33532 -11.20086 -11.04411 -10.85901 -10.74705 -10.48242 -10.16558 -9.83605 -9.60510 -9.51107 -9.11820 -8.49099 -8.09502 -5.99482 -3.96870 -0.39118 2.38146 3.26410 3.33664 3.40817 3.44814 3.61248 4.03905 4.18605 4.22898 4.33800 4.49333 4.53179 4.59066 4.90077 5.08945 5.11057 5.17596 5.19767 5.34231 5.35516 5.51535 5.56754 5.60090 5.69250 5.78621 5.83197 5.99326 6.05339 6.11369 6.22065 6.29323 6.60683 6.62905 6.97085 7.30356 7.31610 7.42340 7.52260 7.85474 8.60326 9.06583 9.63311 11.14197 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033845 B = 0.002850 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.092987 B = 9821.978203 C =10262.697145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.416 3.584 3 O -0.941 6.941 4 O -0.931 6.931 5 C -0.602 4.602 6 C -0.077 4.077 7 C -0.101 4.101 8 C 0.052 3.948 9 N -0.538 5.538 10 C 0.054 3.946 11 C -0.098 4.098 12 C -0.013 4.013 13 C -0.517 4.517 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.052 3.948 22 C -0.140 4.140 23 H 0.126 0.874 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.028 0.972 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.010 0.990 38 H 0.013 0.987 39 H 0.262 0.738 40 H 0.031 0.969 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.718 15.508 5.136 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.598 3.402 3 O -0.939 6.939 4 O -0.928 6.928 5 C -0.731 4.731 6 C -0.097 4.097 7 C -0.140 4.140 8 C -0.076 4.076 9 N -0.263 5.263 10 C -0.073 4.073 11 C -0.136 4.136 12 C -0.051 4.051 13 C -0.555 4.555 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.075 4.075 22 C -0.177 4.177 23 H 0.145 0.855 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.153 0.847 27 H 0.149 0.851 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.262 15.272 4.470 29.015 hybrid contribution 0.499 0.809 1.143 1.486 sum -23.763 16.081 5.613 29.236 Atomic orbital electron populations 1.30305 1.27398 1.11520 1.11642 1.08021 0.78020 0.75959 0.78177 1.93605 1.78923 1.34658 1.86671 1.93617 1.78233 1.66674 1.54242 1.30362 1.06226 1.13979 1.22559 1.20986 0.89431 1.00873 0.98404 1.21585 0.96156 1.01746 0.94481 1.22083 0.94523 0.94489 0.96531 1.61987 1.17453 1.44465 1.02378 1.22304 0.85490 0.98575 1.00976 1.21485 0.98067 0.96117 0.97930 1.19554 0.91926 0.96983 0.96660 1.21159 0.95678 1.15250 1.23453 0.91004 1.25046 0.98387 0.94763 0.95437 1.69922 1.17646 1.27216 1.39659 0.86764 0.80616 0.80710 0.81087 1.20346 1.21467 1.19089 1.22119 0.95113 0.99062 0.91247 1.22135 0.96411 1.00387 0.98810 0.85540 0.85343 0.85303 0.84678 0.85100 0.89974 0.90574 0.91544 0.90594 0.95137 0.91259 0.95374 0.92748 0.91984 0.97139 0.96897 0.92812 0.95038 0.89191 0.90006 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.05 10.62 101.05 1.07 -0.98 16 2 S 2.42 16.59 5.16 -107.50 -0.55 16.04 16 3 O -0.94 -10.20 18.10 -57.83 -1.05 -11.24 16 4 O -0.93 -10.03 15.53 -57.83 -0.90 -10.93 16 5 C -0.60 -3.23 5.27 37.16 0.20 -3.04 16 6 C -0.08 -0.71 2.25 -90.50 -0.20 -0.91 16 7 C -0.10 -0.91 5.38 -26.65 -0.14 -1.06 16 8 C 0.05 0.61 5.46 -3.83 -0.02 0.58 16 9 N -0.54 -7.80 4.66 -234.67 -1.09 -8.90 16 10 C 0.05 0.90 4.96 -3.83 -0.02 0.88 16 11 C -0.10 -2.00 5.08 -26.74 -0.14 -2.13 16 12 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 13 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 14 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 17 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 21 C 0.05 0.74 5.29 -3.83 -0.02 0.72 16 22 C -0.14 -1.62 4.94 -26.65 -0.13 -1.75 16 23 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 24 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 26 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 1.11 7.99 -51.93 -0.41 0.70 16 34 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.05 1.12 6.43 -51.93 -0.33 0.78 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 38 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 1.38 6.21 -51.93 -0.32 1.06 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.05 5.60 -51.93 -0.29 0.76 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -37.04 345.17 -9.86 -46.90 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -7.63 Total: -5.08 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 0.05 Total: -21.76 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.32 Total: -36.62 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -1.94 Total: -22.18 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Atomic # 16 Polarization: 16.59 SS G_CDS: -0.55 Total: 16.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.04 -9.86 -46.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310118382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.569 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds