Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42106 * 108.57675 * 2 1 4 4 O 1.42101 * 108.58038 * 228.97565 * 2 1 3 5 5 C 1.81400 * 101.92175 * 114.48461 * 2 1 3 6 6 C 1.52997 * 109.46980 * 180.02562 * 5 2 1 7 7 C 1.53120 * 109.52109 * 175.00205 * 6 5 2 8 8 C 1.53039 * 109.27940 * 177.62498 * 7 6 5 9 9 N 1.46844 * 109.52178 * 300.81941 * 8 7 6 10 10 C 1.46901 * 111.00526 * 185.84060 * 9 8 7 11 11 C 1.52992 * 109.47859 * 170.00090 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.46848 * 111.20087 * 61.74385 * 9 8 7 22 22 C 1.53048 * 109.52064 * 298.25789 * 21 9 8 23 23 H 1.08998 * 109.47922 * 305.51555 * 1 2 3 24 24 H 1.09003 * 109.47573 * 65.51472 * 1 2 3 25 25 H 1.09004 * 109.47107 * 185.51324 * 1 2 3 26 26 H 1.09003 * 109.46602 * 59.99996 * 5 2 1 27 27 H 1.08998 * 109.47018 * 300.00149 * 5 2 1 28 28 H 1.09002 * 109.52644 * 54.87884 * 6 5 2 29 29 H 1.09004 * 109.50479 * 57.68087 * 7 6 5 30 30 H 1.08998 * 109.50625 * 297.56400 * 7 6 5 31 31 H 1.09003 * 109.46575 * 180.80459 * 8 7 6 32 32 H 1.08995 * 109.45502 * 60.82603 * 8 7 6 33 33 H 1.09002 * 109.46980 * 49.99749 * 10 9 8 34 34 H 1.09001 * 109.46628 * 290.00171 * 10 9 8 35 35 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 36 36 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 39 39 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.46339 * 58.26808 * 21 9 8 41 41 H 1.08994 * 109.46869 * 178.24483 * 21 9 8 42 42 H 1.08998 * 109.49998 * 299.23732 * 22 21 9 43 43 H 1.08994 * 109.50211 * 179.11499 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7984 7 6 4.0237 -1.3224 3.2088 8 6 5.5398 -1.4595 3.3662 9 7 6.0542 -2.4004 2.3630 10 6 7.4844 -2.6631 2.5719 11 6 7.9258 -3.8235 1.6780 12 6 9.4155 -4.0966 1.8952 13 6 9.8502 -5.2401 1.0151 14 1 9.1355 -5.7234 0.3654 15 6 11.1605 -5.6685 1.0384 16 7 11.5399 -6.6661 0.2700 17 14 12.3967 -4.8320 2.1616 18 1 12.4100 -5.5161 3.4796 19 1 13.7487 -4.9062 1.5519 20 1 12.0143 -3.4091 2.3462 21 6 5.8021 -1.9143 1.0004 22 6 4.2938 -1.7907 0.7724 23 1 -0.3635 0.5970 0.8364 24 1 -0.3634 0.4259 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.7609 -1.7369 1.6664 27 1 1.7610 -0.1170 2.4042 28 1 4.1438 0.1696 1.6572 29 1 3.5525 -2.2931 3.3633 30 1 3.6444 -0.6122 3.9434 31 1 5.7691 -1.8319 4.3646 32 1 6.0089 -0.4859 3.2251 33 1 7.6573 -2.9229 3.6163 34 1 8.0581 -1.7713 2.3196 35 1 7.7529 -3.5638 0.6336 36 1 7.3520 -4.7152 1.9303 37 1 9.5888 -4.3562 2.9396 38 1 9.9890 -3.2047 1.6425 39 1 12.4616 -6.9677 0.2867 40 1 6.2701 -0.9385 0.8706 41 1 6.2218 -2.6169 0.2806 42 1 3.8269 -2.7688 0.8886 43 1 4.1074 -1.4150 -0.2336 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310118382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = -112.905358 kcal Electronic energy + Delta-G solvation = -21369.592800 eV Core-core repulsion = 18154.296326 eV Total energy + Delta-G solvation = -3215.296475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26204 -37.93736 -37.08916 -36.72889 -35.19707 -33.39158 -31.80818 -30.58544 -29.85412 -27.75102 -24.66142 -24.18537 -22.85512 -21.52334 -20.72305 -19.71268 -18.89980 -17.65154 -17.16481 -17.00391 -16.65423 -16.36539 -16.10526 -15.61910 -15.28441 -15.10147 -14.78302 -14.49219 -14.23802 -13.87999 -13.87201 -13.66127 -13.47735 -13.39979 -12.98144 -12.92822 -12.83164 -12.71961 -12.48121 -12.14270 -12.02487 -11.97457 -11.79426 -11.75360 -11.63717 -11.48338 -11.33073 -11.03314 -10.81345 -10.76039 -9.24745 -8.29743 -6.34191 -0.85557 1.35119 1.37744 1.49950 1.96236 2.36245 2.79385 2.94910 3.05294 3.18304 3.55811 3.67531 3.82788 4.09262 4.13714 4.19874 4.23161 4.29500 4.33220 4.43173 4.51578 4.60242 4.64744 4.68111 4.74176 4.86638 4.90993 4.94744 4.97576 5.00785 5.06221 5.07234 5.20528 5.26165 5.42450 5.52284 5.60125 5.66157 6.11925 6.25063 6.30467 6.74059 7.30265 8.87509 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033845 B = 0.002850 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.092987 B = 9821.978203 C =10262.697145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 2.405 3.595 3 O -0.992 6.992 4 O -0.984 6.984 5 C -0.588 4.588 6 C -0.083 4.083 7 C -0.095 4.095 8 C 0.045 3.955 9 N -0.544 5.544 10 C 0.064 3.936 11 C -0.089 4.089 12 C -0.009 4.009 13 C -0.534 4.534 14 H 0.027 0.973 15 C 0.000 4.000 16 N -0.954 5.954 17 Si 0.956 3.044 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.247 1.247 21 C 0.049 3.951 22 C -0.139 4.139 23 H 0.155 0.845 24 H 0.131 0.869 25 H 0.153 0.847 26 H 0.161 0.839 27 H 0.170 0.830 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.022 0.978 38 H 0.017 0.983 39 H 0.266 0.734 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.690 17.242 8.153 32.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.594 3.406 3 O -0.990 6.990 4 O -0.981 6.981 5 C -0.719 4.719 6 C -0.103 4.103 7 C -0.134 4.134 8 C -0.082 4.082 9 N -0.269 5.269 10 C -0.064 4.064 11 C -0.127 4.127 12 C -0.047 4.047 13 C -0.572 4.572 14 H 0.046 0.954 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.779 3.221 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.170 1.170 21 C -0.079 4.079 22 C -0.177 4.177 23 H 0.174 0.826 24 H 0.150 0.850 25 H 0.171 0.829 26 H 0.179 0.821 27 H 0.188 0.812 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.225 17.026 7.471 32.147 hybrid contribution 1.002 0.193 0.141 1.030 sum -25.223 17.219 7.612 31.474 Atomic orbital electron populations 1.30085 1.21821 1.13891 1.13216 1.07874 0.80014 0.74390 0.78294 1.93540 1.81133 1.36837 1.87461 1.93554 1.80496 1.67312 1.56746 1.30227 1.03609 1.16119 1.21924 1.20978 0.92055 0.99550 0.97679 1.21600 0.94075 1.02869 0.94858 1.22269 0.96457 0.93671 0.95844 1.61954 1.15806 1.46025 1.03127 1.22074 0.87172 0.96725 1.00409 1.21302 0.95658 0.97420 0.98335 1.19488 0.94293 0.94964 0.95947 1.21516 0.95350 1.16665 1.23701 0.95429 1.26095 1.00816 0.95424 0.97257 1.70084 1.18501 1.29118 1.41729 0.85573 0.77275 0.80387 0.78879 1.18806 1.20953 1.17030 1.22118 0.97012 0.98007 0.90798 1.22105 0.94650 1.01322 0.99576 0.82643 0.85037 0.82852 0.82103 0.81216 0.90655 0.90149 0.88428 0.89604 0.95119 0.89991 0.95336 0.93992 0.93199 0.95960 0.96487 0.92474 0.95401 0.91774 0.89986 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.66 10.62 113.37 1.20 -0.45 16 2 S 2.41 30.29 5.16 -56.49 -0.29 30.00 16 3 O -0.99 -21.45 18.10 -127.37 -2.31 -23.76 16 4 O -0.98 -21.84 15.53 -127.37 -1.98 -23.81 16 5 C -0.59 -4.31 5.27 71.98 0.38 -3.93 16 6 C -0.08 -1.35 2.25 -10.71 -0.02 -1.38 16 7 C -0.10 -1.40 5.38 30.65 0.16 -1.24 16 8 C 0.05 0.95 5.46 86.33 0.47 1.42 16 9 N -0.54 -15.41 4.66 -896.37 -4.17 -19.58 16 10 C 0.06 2.08 4.96 86.30 0.43 2.51 16 11 C -0.09 -3.71 5.08 30.59 0.16 -3.56 16 12 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 13 C -0.53 -32.29 9.66 25.60 0.25 -32.04 16 14 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 15 C 0.00 0.02 5.47 84.66 0.46 0.49 16 16 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 17 Si 0.96 45.43 27.47 68.60 1.88 47.32 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 21 C 0.05 1.41 5.29 86.33 0.46 1.86 16 22 C -0.14 -3.23 4.94 30.65 0.15 -3.08 16 23 H 0.16 -0.41 8.14 -2.39 -0.02 -0.43 16 24 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.15 -0.26 8.14 -2.39 -0.02 -0.27 16 26 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 1.63 8.02 -2.39 -0.02 1.61 16 32 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 34 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 35 H 0.04 1.81 6.43 -2.39 -0.02 1.80 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 38 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 39 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 40 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 2.13 6.21 -2.39 -0.01 2.11 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.08 2.00 5.60 -2.39 -0.01 1.99 16 Total: -1.00 -84.94 345.17 -1.45 -86.39 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 0.90 Total: 4.62 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 4.22 Total: -39.72 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -3.87 Total: -81.04 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -4.28 Total: -47.57 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Atomic # 16 Polarization: 30.29 SS G_CDS: -0.29 Total: 30.00 kcal Total: -84.94 -1.45 -86.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310118382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.519 kcal (2) G-P(sol) polarization free energy of solvation -84.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds