Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 H 1.09003 * 109.46876 * 300.00595 * 5 2 1 7 7 C 1.52998 * 109.47061 * 59.99972 * 5 2 1 8 8 C 1.53001 * 109.47347 * 180.02562 * 7 5 2 9 9 C 1.52998 * 109.46967 * 300.00028 * 8 7 5 10 10 C 1.53008 * 109.47080 * 59.99810 * 9 8 7 11 11 H 1.08994 * 109.46949 * 59.99888 * 10 9 8 12 12 N 1.46900 * 109.46820 * 180.02562 * 10 9 8 13 13 C 1.46902 * 110.99906 * 274.99766 * 12 10 9 14 14 C 1.53001 * 109.47304 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46977 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46773 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99714 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99636 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00436 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99688 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47059 * 90.00122 * 20 18 16 22 22 H 1.48500 * 109.46875 * 209.99855 * 20 18 16 23 23 H 1.48497 * 109.47125 * 330.00054 * 20 18 16 24 24 C 1.52997 * 109.47033 * 299.99921 * 10 9 8 25 25 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 26 26 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 27 27 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 28 28 H 1.09007 * 109.47235 * 300.00026 * 7 5 2 29 29 H 1.09002 * 109.47408 * 59.99871 * 7 5 2 30 30 H 1.08997 * 109.47292 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.46752 * 59.99699 * 8 7 5 32 32 H 1.09007 * 109.47202 * 300.00260 * 9 8 7 33 33 H 1.08996 * 109.47428 * 179.97438 * 9 8 7 34 34 H 1.00899 * 111.00429 * 38.95598 * 12 10 9 35 35 H 1.09005 * 109.47185 * 300.00431 * 13 12 10 36 36 H 1.08998 * 109.47155 * 60.00333 * 13 12 10 37 37 H 1.08991 * 109.47126 * 300.00357 * 14 13 12 38 38 H 1.09008 * 109.46903 * 60.00175 * 14 13 12 39 39 H 1.08997 * 109.47359 * 299.99738 * 15 14 13 40 40 H 1.08998 * 109.47310 * 60.00209 * 15 14 13 41 41 H 0.96999 * 119.99928 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.47655 * 300.00020 * 24 10 9 43 43 H 1.08997 * 109.46950 * 179.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 1 1.7610 -1.7370 -1.6664 7 6 1.5885 0.1326 -2.7227 8 6 1.9040 -0.4883 -4.0850 9 6 3.4206 -0.5721 -4.2683 10 6 4.0210 -1.4404 -3.1607 11 1 3.5930 -2.4415 -3.2117 12 7 5.4773 -1.5203 -3.3364 13 6 5.8359 -2.5872 -4.2804 14 6 7.3570 -2.6400 -4.4366 15 6 7.7304 -3.7516 -5.4194 16 6 9.2287 -3.8040 -5.5728 17 1 9.8520 -3.1132 -5.0245 18 6 9.8035 -4.7331 -6.4138 19 7 9.0443 -5.5739 -7.0818 20 14 11.6606 -4.7976 -6.6045 21 1 12.2299 -5.7264 -5.5952 22 1 12.0018 -5.2782 -7.9675 23 1 12.2264 -3.4396 -6.4023 24 6 3.7055 -0.8195 -1.7985 25 1 -0.3633 0.5970 -0.8365 26 1 -0.3633 0.4260 0.9352 27 1 -0.3634 -1.0230 -0.0987 28 1 0.5079 0.1919 -2.5924 29 1 2.0161 1.1339 -2.6715 30 1 1.4767 0.1305 -4.8741 31 1 1.4760 -1.4894 -4.1359 32 1 3.8487 0.4291 -4.2173 33 1 3.6455 -1.0147 -5.2386 34 1 5.8550 -0.6330 -3.6330 35 1 5.4765 -3.5439 -3.9012 36 1 5.3777 -2.3849 -5.2485 37 1 7.7167 -1.6835 -4.8156 38 1 7.8148 -2.8426 -3.4684 39 1 7.3708 -4.7080 -5.0399 40 1 7.2725 -3.5495 -6.3877 41 1 9.4487 -6.2278 -7.6732 42 1 4.1334 0.1816 -1.7475 43 1 4.1327 -1.4383 -1.0095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330495015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -101.377844 kcal Electronic energy + Delta-G solvation = -21154.754300 eV Core-core repulsion = 17939.957696 eV Total energy + Delta-G solvation = -3214.796604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.23618 -37.27974 -36.30525 -35.74931 -33.45978 -31.57166 -31.34417 -30.11087 -28.64384 -25.76579 -23.51299 -22.73602 -21.83793 -20.65558 -19.85231 -19.07658 -17.27055 -16.47242 -16.28779 -16.19384 -15.41240 -15.30215 -14.73219 -14.49538 -14.37422 -14.21796 -13.66882 -13.52381 -13.34095 -13.16784 -12.77844 -12.35656 -12.27600 -12.24577 -12.06176 -11.70042 -11.63480 -11.51595 -11.38063 -11.30047 -11.04811 -10.86785 -10.66163 -10.57733 -10.51216 -10.20264 -9.68931 -9.31645 -9.04234 -8.33280 -8.16873 -5.98586 -4.00503 -0.36004 2.38778 3.28225 3.33585 3.39480 3.43294 3.60584 3.98719 4.08604 4.36049 4.45824 4.49205 4.55762 4.62961 4.73034 4.82047 4.96792 5.05891 5.17655 5.21303 5.29878 5.37374 5.52573 5.59998 5.62480 5.73319 5.77997 5.84493 5.87947 6.05736 6.09310 6.32066 6.72623 6.77236 7.14476 7.32118 7.60894 7.69710 7.84473 8.01925 8.45396 9.06786 9.63539 11.12915 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.002567 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.354015 B =10903.328074 C =11278.514368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.417 3.583 3 O -0.937 6.937 4 O -0.938 6.938 5 C -0.565 4.565 6 H 0.138 0.862 7 C -0.110 4.110 8 C -0.107 4.107 9 C -0.154 4.154 10 C 0.097 3.903 11 H 0.080 0.920 12 N -0.688 5.688 13 C 0.060 3.940 14 C -0.108 4.108 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.094 4.094 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.340 0.660 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.180 12.329 10.224 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.601 3.399 3 O -0.934 6.934 4 O -0.935 6.935 5 C -0.675 4.675 6 H 0.156 0.844 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.193 4.193 10 C -0.015 4.015 11 H 0.098 0.902 12 N -0.317 5.317 13 C -0.068 4.068 14 C -0.146 4.146 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.134 4.134 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.491 12.083 11.351 27.142 hybrid contribution 0.066 -0.117 -1.676 1.681 sum -21.425 11.966 9.675 26.379 Atomic orbital electron populations 1.30317 1.27266 1.11581 1.11678 1.08074 0.78219 0.75985 0.77669 1.93587 1.78861 1.34488 1.86511 1.93609 1.78922 1.67010 1.54002 1.30190 1.06436 1.11876 1.18966 0.84441 1.21487 1.00014 0.99001 0.94279 1.21388 0.96417 1.01194 0.95606 1.22342 0.95820 1.01075 1.00075 1.21432 0.88841 0.98766 0.92445 0.90199 1.60592 1.09133 1.09768 1.52223 1.22158 0.98454 0.93771 0.92455 1.21633 0.91539 1.00502 1.00919 1.19061 0.96203 0.92807 0.93452 1.21264 0.92250 1.16831 1.25326 0.92654 1.25032 0.98098 0.95663 0.95761 1.69965 1.34956 1.20133 1.28642 0.86591 0.85802 0.78309 0.77281 1.20637 1.21275 1.19878 1.21324 0.88655 1.03296 1.00079 0.85236 0.85361 0.85307 0.90823 0.89640 0.91333 0.91502 0.91432 0.91311 0.84215 0.91499 0.95665 0.93642 0.92499 0.96613 0.96864 0.93052 0.90187 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.39 10.17 101.05 1.03 -1.36 16 2 S 2.42 18.56 4.88 -107.50 -0.52 18.04 16 3 O -0.94 -10.46 17.91 -57.83 -1.04 -11.50 16 4 O -0.94 -11.09 18.10 -57.83 -1.05 -12.14 16 5 C -0.56 -3.84 2.58 -26.73 -0.07 -3.91 16 6 H 0.14 0.64 8.14 -51.92 -0.42 0.22 16 7 C -0.11 -0.63 4.95 -26.73 -0.13 -0.76 16 8 C -0.11 -0.74 5.92 -26.73 -0.16 -0.90 16 9 C -0.15 -1.46 5.17 -26.73 -0.14 -1.59 16 10 C 0.10 1.07 2.47 -67.71 -0.17 0.91 16 11 H 0.08 0.91 7.80 -51.93 -0.41 0.50 16 12 N -0.69 -9.64 6.25 -106.72 -0.67 -10.30 16 13 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 14 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.09 -0.94 4.82 -26.73 -0.13 -1.07 16 25 H 0.13 0.23 6.87 -51.92 -0.36 -0.13 16 26 H 0.13 0.41 8.14 -51.92 -0.42 -0.02 16 27 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 28 H 0.07 0.21 6.56 -51.93 -0.34 -0.13 16 29 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 34 H 0.34 4.48 8.47 -39.29 -0.33 4.15 16 35 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 36 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -36.04 352.25 -10.39 -46.43 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -7.66 Total: -2.90 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -0.48 Total: -23.34 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.07 Total: -36.79 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -2.08 Total: -23.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 18.56 SS G_CDS: -0.52 Total: 18.04 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.04 -10.39 -46.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330495015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.951 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds