Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 H 1.09003 * 109.46876 * 300.00595 * 5 2 1 7 7 C 1.52998 * 109.47061 * 59.99972 * 5 2 1 8 8 C 1.53001 * 109.47347 * 180.02562 * 7 5 2 9 9 C 1.52998 * 109.46967 * 300.00028 * 8 7 5 10 10 C 1.53008 * 109.47080 * 59.99810 * 9 8 7 11 11 H 1.08994 * 109.46949 * 59.99888 * 10 9 8 12 12 N 1.46900 * 109.46820 * 180.02562 * 10 9 8 13 13 C 1.46902 * 110.99906 * 274.99766 * 12 10 9 14 14 C 1.53001 * 109.47304 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46977 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46773 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99714 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99636 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00436 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99688 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47059 * 90.00122 * 20 18 16 22 22 H 1.48500 * 109.46875 * 209.99855 * 20 18 16 23 23 H 1.48497 * 109.47125 * 330.00054 * 20 18 16 24 24 C 1.52997 * 109.47033 * 299.99921 * 10 9 8 25 25 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 26 26 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 27 27 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 28 28 H 1.09007 * 109.47235 * 300.00026 * 7 5 2 29 29 H 1.09002 * 109.47408 * 59.99871 * 7 5 2 30 30 H 1.08997 * 109.47292 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.46752 * 59.99699 * 8 7 5 32 32 H 1.09007 * 109.47202 * 300.00260 * 9 8 7 33 33 H 1.08996 * 109.47428 * 179.97438 * 9 8 7 34 34 H 1.00899 * 111.00429 * 38.95598 * 12 10 9 35 35 H 1.09005 * 109.47185 * 300.00431 * 13 12 10 36 36 H 1.08998 * 109.47155 * 60.00333 * 13 12 10 37 37 H 1.08991 * 109.47126 * 300.00357 * 14 13 12 38 38 H 1.09008 * 109.46903 * 60.00175 * 14 13 12 39 39 H 1.08997 * 109.47359 * 299.99738 * 15 14 13 40 40 H 1.08998 * 109.47310 * 60.00209 * 15 14 13 41 41 H 0.96999 * 119.99928 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.47655 * 300.00020 * 24 10 9 43 43 H 1.08997 * 109.46950 * 179.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 1 1.7610 -1.7370 -1.6664 7 6 1.5885 0.1326 -2.7227 8 6 1.9040 -0.4883 -4.0850 9 6 3.4206 -0.5721 -4.2683 10 6 4.0210 -1.4404 -3.1607 11 1 3.5930 -2.4415 -3.2117 12 7 5.4773 -1.5203 -3.3364 13 6 5.8359 -2.5872 -4.2804 14 6 7.3570 -2.6400 -4.4366 15 6 7.7304 -3.7516 -5.4194 16 6 9.2287 -3.8040 -5.5728 17 1 9.8520 -3.1132 -5.0245 18 6 9.8035 -4.7331 -6.4138 19 7 9.0443 -5.5739 -7.0818 20 14 11.6606 -4.7976 -6.6045 21 1 12.2299 -5.7264 -5.5952 22 1 12.0018 -5.2782 -7.9675 23 1 12.2264 -3.4396 -6.4023 24 6 3.7055 -0.8195 -1.7985 25 1 -0.3633 0.5970 -0.8365 26 1 -0.3633 0.4260 0.9352 27 1 -0.3634 -1.0230 -0.0987 28 1 0.5079 0.1919 -2.5924 29 1 2.0161 1.1339 -2.6715 30 1 1.4767 0.1305 -4.8741 31 1 1.4760 -1.4894 -4.1359 32 1 3.8487 0.4291 -4.2173 33 1 3.6455 -1.0147 -5.2386 34 1 5.8550 -0.6330 -3.6330 35 1 5.4765 -3.5439 -3.9012 36 1 5.3777 -2.3849 -5.2485 37 1 7.7167 -1.6835 -4.8156 38 1 7.8148 -2.8426 -3.4684 39 1 7.3708 -4.7080 -5.0399 40 1 7.2725 -3.5495 -6.3877 41 1 9.4487 -6.2278 -7.6732 42 1 4.1334 0.1816 -1.7475 43 1 4.1327 -1.4383 -1.0095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330495015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -128.521214 kcal Electronic energy + Delta-G solvation = -21155.931325 eV Core-core repulsion = 17939.957696 eV Total energy + Delta-G solvation = -3215.973629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02769 -38.00116 -37.06384 -36.99464 -35.28399 -33.21460 -31.99793 -30.75001 -29.68233 -27.46617 -24.56037 -23.96835 -22.77517 -22.05694 -20.94764 -19.69014 -18.49760 -17.93536 -17.05705 -16.82430 -16.60889 -16.48717 -16.05418 -15.73382 -15.30351 -15.14683 -14.54895 -14.33754 -14.00630 -13.90246 -13.85241 -13.71450 -13.29411 -13.24675 -13.07778 -13.01218 -12.76384 -12.72206 -12.48115 -12.27873 -12.22213 -12.11635 -11.86166 -11.70326 -11.59482 -11.44781 -11.31324 -11.14604 -10.78954 -10.56440 -9.30292 -8.21472 -6.32401 -0.90736 1.39185 1.40729 1.51897 1.88510 2.40089 2.70311 3.07836 3.11600 3.17178 3.58108 3.75794 3.83036 4.01970 4.12634 4.15365 4.21866 4.30334 4.35129 4.40587 4.45718 4.47236 4.61314 4.72007 4.88908 4.93821 4.96197 4.96987 5.04825 5.10349 5.15021 5.20889 5.22209 5.29672 5.40568 5.51335 5.74084 5.84760 6.08738 6.26760 6.48294 6.84411 7.36853 8.90495 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.002567 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.354015 B =10903.328074 C =11278.514368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.411 3.589 3 O -0.983 6.983 4 O -0.992 6.992 5 C -0.555 4.555 6 H 0.164 0.836 7 C -0.113 4.113 8 C -0.105 4.105 9 C -0.153 4.153 10 C 0.095 3.905 11 H 0.078 0.922 12 N -0.695 5.695 13 C 0.075 3.925 14 C -0.094 4.094 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.058 0.942 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.264 1.264 24 C -0.099 4.099 25 H 0.159 0.841 26 H 0.138 0.862 27 H 0.156 0.844 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.344 0.656 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.049 0.951 38 H 0.049 0.951 39 H -0.009 1.009 40 H -0.008 1.008 41 H 0.264 0.736 42 H 0.073 0.927 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.065 13.123 10.178 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.600 3.400 3 O -0.980 6.980 4 O -0.989 6.989 5 C -0.666 4.666 6 H 0.181 0.819 7 C -0.151 4.151 8 C -0.144 4.144 9 C -0.192 4.192 10 C -0.015 4.015 11 H 0.096 0.904 12 N -0.325 5.325 13 C -0.054 4.054 14 C -0.132 4.132 15 C -0.011 4.011 16 C -0.582 4.582 17 H 0.076 0.924 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.188 1.188 24 C -0.138 4.138 25 H 0.177 0.823 26 H 0.156 0.844 27 H 0.174 0.826 28 H 0.134 0.866 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.009 0.991 40 H 0.011 0.989 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.342 12.899 11.328 28.975 hybrid contribution 0.568 -0.372 -1.676 1.808 sum -22.774 12.527 9.652 27.726 Atomic orbital electron populations 1.30098 1.20837 1.14227 1.13642 1.07868 0.80579 0.74378 0.77163 1.93529 1.81201 1.36253 1.87011 1.93544 1.81424 1.67788 1.56156 1.30101 1.04077 1.13696 1.18725 0.81850 1.21620 1.02564 0.98143 0.92744 1.21405 0.94020 1.02205 0.96797 1.22299 0.98162 1.00331 0.98397 1.21509 0.86864 0.99317 0.93845 0.90378 1.60516 1.11658 1.09245 1.51068 1.21821 0.95557 0.94678 0.93303 1.21392 0.94413 0.98558 0.98869 1.18957 0.95102 0.93464 0.93596 1.21706 0.93679 1.17186 1.25661 0.92397 1.25989 1.03565 0.95099 0.95234 1.70090 1.37286 1.20778 1.29234 0.85441 0.79222 0.78803 0.77546 1.19779 1.20527 1.18822 1.21282 0.91453 1.02408 0.98688 0.82306 0.84378 0.82582 0.86592 0.90180 0.89960 0.90654 0.91485 0.92690 0.83727 0.92115 0.95477 0.93187 0.93184 0.99073 0.98944 0.92720 0.90837 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.84 10.17 113.37 1.15 -0.69 16 2 S 2.41 34.30 4.88 -56.49 -0.28 34.03 16 3 O -0.98 -21.85 17.91 -127.37 -2.28 -24.14 16 4 O -0.99 -23.79 18.10 -127.37 -2.31 -26.10 16 5 C -0.56 -6.47 2.58 30.59 0.08 -6.39 16 6 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 7 C -0.11 -0.92 4.95 30.59 0.15 -0.77 16 8 C -0.11 -1.16 5.92 30.59 0.18 -0.98 16 9 C -0.15 -2.73 5.17 30.60 0.16 -2.57 16 10 C 0.10 2.09 2.47 44.92 0.11 2.20 16 11 H 0.08 1.73 7.80 -2.39 -0.02 1.71 16 12 N -0.69 -19.71 6.25 -491.56 -3.07 -22.78 16 13 C 0.08 2.59 5.48 86.30 0.47 3.07 16 14 C -0.09 -4.00 5.41 30.60 0.17 -3.84 16 15 C 0.03 1.43 4.97 29.85 0.15 1.57 16 16 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 20 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 C -0.10 -1.97 4.82 30.59 0.15 -1.82 16 25 H 0.16 -0.37 6.87 -2.39 -0.02 -0.39 16 26 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.12 0.00 6.56 -2.38 -0.02 -0.01 16 29 H 0.08 0.79 8.06 -2.39 -0.02 0.77 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.19 8.13 -2.38 -0.02 1.17 16 33 H 0.05 1.13 7.45 -2.39 -0.02 1.11 16 34 H 0.34 9.18 8.47 -89.69 -0.76 8.42 16 35 H 0.06 2.15 8.06 -2.38 -0.02 2.13 16 36 H 0.03 0.92 7.44 -2.39 -0.02 0.90 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -81.06 352.25 -1.95 -83.01 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.21 Total: 7.63 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 3.46 Total: -41.43 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.79 Total: -80.07 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -4.59 Total: -50.24 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 34.30 SS G_CDS: -0.28 Total: 34.03 kcal Total: -81.06 -1.95 -83.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330495015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.515 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds