Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 108.57549 * 2 1 4 4 O 1.42093 * 108.57792 * 228.97567 * 2 1 3 5 5 C 1.81399 * 101.92054 * 114.48493 * 2 1 3 6 6 H 1.09000 * 109.46795 * 65.00083 * 5 2 1 7 7 C 1.52997 * 109.47228 * 305.00195 * 5 2 1 8 8 C 1.53006 * 109.47164 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.46626 * 59.99702 * 8 7 5 10 10 C 1.52997 * 109.47592 * 300.00035 * 9 8 7 11 11 H 1.09000 * 109.47140 * 300.00346 * 10 9 8 12 12 N 1.46905 * 109.47305 * 180.02562 * 10 9 8 13 13 C 1.46901 * 110.99811 * 84.99969 * 12 10 9 14 14 C 1.53000 * 109.46777 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47205 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47164 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00444 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00329 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 119.99791 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46826 * 89.99672 * 20 18 16 22 22 H 1.48497 * 109.46700 * 210.00061 * 20 18 16 23 23 H 1.48501 * 109.46738 * 330.00045 * 20 18 16 24 24 C 1.52996 * 109.47165 * 60.00300 * 10 9 8 25 25 H 1.08999 * 109.47161 * 305.51394 * 1 2 3 26 26 H 1.08999 * 109.46999 * 65.51103 * 1 2 3 27 27 H 1.08997 * 109.47238 * 185.51447 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99976 * 7 5 2 29 29 H 1.09000 * 109.47140 * 299.99676 * 7 5 2 30 30 H 1.08993 * 109.46955 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47050 * 300.00004 * 8 7 5 32 32 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 33 33 H 1.09002 * 109.46719 * 180.02562 * 9 8 7 34 34 H 1.00892 * 110.99786 * 208.95798 * 12 10 9 35 35 H 1.08998 * 109.47025 * 299.99379 * 13 12 10 36 36 H 1.08998 * 109.47165 * 60.00443 * 13 12 10 37 37 H 1.09011 * 109.46614 * 299.99679 * 14 13 12 38 38 H 1.09000 * 109.47551 * 59.99370 * 14 13 12 39 39 H 1.08999 * 109.46688 * 299.99659 * 15 14 13 40 40 H 1.09001 * 109.47175 * 59.99178 * 15 14 13 41 41 H 0.96998 * 120.00293 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.47534 * 180.02562 * 24 10 9 43 43 H 1.08996 * 109.47134 * 59.99508 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8388 -1.7677 1.6344 7 6 1.4845 0.0621 2.7146 8 6 1.8000 -0.5588 4.0770 9 6 3.3114 -0.5287 4.3133 10 6 4.0156 -1.3263 3.2140 11 1 3.6654 -2.3584 3.2328 12 7 5.4667 -1.2979 3.4413 13 6 5.8733 -2.3525 4.3796 14 6 7.3873 -2.2908 4.5912 15 6 7.8110 -3.3896 5.5679 16 6 9.3023 -3.3291 5.7759 17 1 9.8892 -2.5815 5.2630 18 6 9.9174 -4.2277 6.6217 19 7 11.2189 -4.1753 6.8028 20 14 8.9022 -5.5204 7.5093 21 1 8.8188 -6.7445 6.6728 22 1 9.5454 -5.8500 8.8065 23 1 7.5353 -4.9941 7.7540 24 6 3.7001 -0.7055 1.8517 25 1 -0.3633 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3633 -1.0229 0.0988 28 1 0.4078 0.0402 2.5464 29 1 1.8344 1.0942 2.6955 30 1 1.2980 0.0092 4.8601 31 1 1.4498 -1.5908 4.0958 32 1 3.6616 0.5034 4.2945 33 1 3.5362 -0.9714 5.2837 34 1 5.9706 -1.3745 2.5706 35 1 5.3672 -2.2050 5.3336 36 1 5.6025 -3.3262 3.9713 37 1 7.8938 -2.4381 3.6372 38 1 7.6578 -1.3170 4.9995 39 1 7.3045 -3.2427 6.5218 40 1 7.5406 -4.3632 5.1591 41 1 11.6516 -4.8072 7.3981 42 1 4.2013 -1.2740 1.0684 43 1 4.0502 0.3265 1.8329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330495016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = -96.693653 kcal Electronic energy + Delta-G solvation = -21212.909752 eV Core-core repulsion = 17998.316270 eV Total energy + Delta-G solvation = -3214.593482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.25138 -37.34779 -36.37801 -35.86531 -33.47926 -31.71766 -31.44060 -30.25013 -28.89427 -26.10479 -23.63465 -22.63611 -21.75145 -20.40781 -19.87418 -19.13105 -17.28904 -16.72893 -16.48052 -16.28104 -15.56930 -15.44868 -14.91234 -14.62444 -14.30065 -14.10812 -13.76563 -13.69940 -13.52123 -12.99068 -12.70886 -12.50344 -12.41534 -12.34624 -12.19954 -12.05019 -11.78593 -11.54416 -11.51025 -11.34013 -11.01647 -10.99410 -10.78716 -10.66989 -10.21457 -9.93610 -9.71859 -9.54735 -9.15878 -8.52327 -8.29672 -6.02408 -4.00118 -0.42875 2.31084 3.20700 3.30844 3.38104 3.41690 3.54765 3.88131 4.01378 4.31066 4.36619 4.46277 4.49519 4.54933 4.71609 4.82976 4.91311 5.00297 5.08718 5.16420 5.25703 5.31349 5.44851 5.54532 5.60824 5.64961 5.70688 5.75040 5.88172 5.99647 6.14725 6.23069 6.55360 6.58633 6.92082 7.19286 7.35963 7.43967 7.54368 7.81962 8.56927 9.03407 9.60121 11.11223 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.002716 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.637166 B =10306.308203 C =10623.484383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.417 3.583 3 O -0.935 6.935 4 O -0.940 6.940 5 C -0.563 4.563 6 H 0.137 0.863 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.112 4.112 10 C 0.097 3.903 11 H 0.045 0.955 12 N -0.688 5.688 13 C 0.058 3.942 14 C -0.100 4.100 15 C -0.012 4.012 16 C -0.519 4.519 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.109 4.109 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.341 0.659 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.008 0.992 41 H 0.262 0.738 42 H 0.077 0.923 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.363 8.175 -11.073 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.932 6.932 4 O -0.938 6.938 5 C -0.673 4.673 6 H 0.155 0.845 7 C -0.149 4.149 8 C -0.150 4.150 9 C -0.150 4.150 10 C -0.014 4.014 11 H 0.063 0.937 12 N -0.319 5.319 13 C -0.071 4.071 14 C -0.138 4.138 15 C -0.050 4.050 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.148 4.148 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.160 0.840 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -26.676 8.875 -11.183 30.256 hybrid contribution -1.081 -1.986 0.539 2.325 sum -27.757 6.889 -10.645 30.516 Atomic orbital electron populations 1.30312 1.27077 1.11598 1.11798 1.08074 0.78329 0.76010 0.77545 1.93599 1.78851 1.34324 1.86415 1.93605 1.79044 1.67105 1.54003 1.30164 1.05521 1.12295 1.19284 0.84511 1.21522 0.99131 0.99807 0.94425 1.21470 0.97011 1.01035 0.95518 1.21572 0.93198 1.01581 0.98621 1.21389 0.89294 0.97675 0.93068 0.93710 1.60548 1.03563 1.50743 1.17023 1.22201 0.98414 0.90780 0.95704 1.21452 0.91263 1.00881 1.00215 1.19536 0.97407 0.93644 0.94442 1.21157 0.90846 1.16823 1.26857 0.91005 1.25050 0.94780 0.97418 0.96379 1.69916 1.08941 1.37527 1.37984 0.86761 0.80950 0.82160 0.79286 1.20390 1.21412 1.19069 1.21535 0.89972 1.04204 0.99049 0.85090 0.85297 0.85327 0.90711 0.89517 0.91052 0.91764 0.90790 0.91381 0.84034 0.91461 0.95779 0.93003 0.91870 0.96673 0.97347 0.92776 0.90398 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.09 10.01 101.05 1.01 -1.07 16 2 S 2.42 17.21 4.90 -107.50 -0.53 16.68 16 3 O -0.93 -10.06 18.06 -57.83 -1.04 -11.10 16 4 O -0.94 -10.45 18.10 -57.83 -1.05 -11.50 16 5 C -0.56 -3.53 2.62 -26.73 -0.07 -3.60 16 6 H 0.14 0.58 8.14 -51.92 -0.42 0.16 16 7 C -0.11 -0.59 4.91 -26.73 -0.13 -0.72 16 8 C -0.11 -0.75 5.92 -26.73 -0.16 -0.91 16 9 C -0.11 -1.09 5.42 -26.73 -0.15 -1.23 16 10 C 0.10 1.03 2.49 -67.71 -0.17 0.86 16 11 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 12 N -0.69 -9.24 6.31 -106.73 -0.67 -9.92 16 13 C 0.06 0.92 5.48 -3.82 -0.02 0.89 16 14 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 15 C -0.01 -0.30 4.04 -27.89 -0.11 -0.41 16 16 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 20 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 24 C -0.11 -0.99 4.47 -26.73 -0.12 -1.11 16 25 H 0.13 0.18 6.77 -51.92 -0.35 -0.17 16 26 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.17 6.39 -51.93 -0.33 -0.16 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.74 7.45 -51.93 -0.39 0.35 16 34 H 0.34 4.36 8.35 -39.30 -0.33 4.03 16 35 H 0.07 1.07 7.43 -51.93 -0.39 0.68 16 36 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 37 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 40 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -36.68 348.33 -10.04 -46.71 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.61 Total: -2.89 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -0.49 Total: -22.98 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.10 Total: -37.43 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -2.09 Total: -22.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 16 Polarization: 17.21 SS G_CDS: -0.53 Total: 16.68 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.68 -10.04 -46.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330495016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.981 kcal (2) G-P(sol) polarization free energy of solvation -36.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds