Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 108.57549 * 2 1 4 4 O 1.42093 * 108.57792 * 228.97567 * 2 1 3 5 5 C 1.81399 * 101.92054 * 114.48493 * 2 1 3 6 6 H 1.09000 * 109.46795 * 65.00083 * 5 2 1 7 7 C 1.52997 * 109.47228 * 305.00195 * 5 2 1 8 8 C 1.53006 * 109.47164 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.46626 * 59.99702 * 8 7 5 10 10 C 1.52997 * 109.47592 * 300.00035 * 9 8 7 11 11 H 1.09000 * 109.47140 * 300.00346 * 10 9 8 12 12 N 1.46905 * 109.47305 * 180.02562 * 10 9 8 13 13 C 1.46901 * 110.99811 * 84.99969 * 12 10 9 14 14 C 1.53000 * 109.46777 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47205 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47164 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00444 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00329 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 119.99791 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46826 * 89.99672 * 20 18 16 22 22 H 1.48497 * 109.46700 * 210.00061 * 20 18 16 23 23 H 1.48501 * 109.46738 * 330.00045 * 20 18 16 24 24 C 1.52996 * 109.47165 * 60.00300 * 10 9 8 25 25 H 1.08999 * 109.47161 * 305.51394 * 1 2 3 26 26 H 1.08999 * 109.46999 * 65.51103 * 1 2 3 27 27 H 1.08997 * 109.47238 * 185.51447 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99976 * 7 5 2 29 29 H 1.09000 * 109.47140 * 299.99676 * 7 5 2 30 30 H 1.08993 * 109.46955 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47050 * 300.00004 * 8 7 5 32 32 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 33 33 H 1.09002 * 109.46719 * 180.02562 * 9 8 7 34 34 H 1.00892 * 110.99786 * 208.95798 * 12 10 9 35 35 H 1.08998 * 109.47025 * 299.99379 * 13 12 10 36 36 H 1.08998 * 109.47165 * 60.00443 * 13 12 10 37 37 H 1.09011 * 109.46614 * 299.99679 * 14 13 12 38 38 H 1.09000 * 109.47551 * 59.99370 * 14 13 12 39 39 H 1.08999 * 109.46688 * 299.99659 * 15 14 13 40 40 H 1.09001 * 109.47175 * 59.99178 * 15 14 13 41 41 H 0.96998 * 120.00293 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.47534 * 180.02562 * 24 10 9 43 43 H 1.08996 * 109.47134 * 59.99508 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8388 -1.7677 1.6344 7 6 1.4845 0.0621 2.7146 8 6 1.8000 -0.5588 4.0770 9 6 3.3114 -0.5287 4.3133 10 6 4.0156 -1.3263 3.2140 11 1 3.6654 -2.3584 3.2328 12 7 5.4667 -1.2979 3.4413 13 6 5.8733 -2.3525 4.3796 14 6 7.3873 -2.2908 4.5912 15 6 7.8110 -3.3896 5.5679 16 6 9.3023 -3.3291 5.7759 17 1 9.8892 -2.5815 5.2630 18 6 9.9174 -4.2277 6.6217 19 7 11.2189 -4.1753 6.8028 20 14 8.9022 -5.5204 7.5093 21 1 8.8188 -6.7445 6.6728 22 1 9.5454 -5.8500 8.8065 23 1 7.5353 -4.9941 7.7540 24 6 3.7001 -0.7055 1.8517 25 1 -0.3633 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3633 -1.0229 0.0988 28 1 0.4078 0.0402 2.5464 29 1 1.8344 1.0942 2.6955 30 1 1.2980 0.0092 4.8601 31 1 1.4498 -1.5908 4.0958 32 1 3.6616 0.5034 4.2945 33 1 3.5362 -0.9714 5.2837 34 1 5.9706 -1.3745 2.5706 35 1 5.3672 -2.2050 5.3336 36 1 5.6025 -3.3262 3.9713 37 1 7.8938 -2.4381 3.6372 38 1 7.6578 -1.3170 4.9995 39 1 7.3045 -3.2427 6.5218 40 1 7.5406 -4.3632 5.1591 41 1 11.6516 -4.8072 7.3981 42 1 4.2013 -1.2740 1.0684 43 1 4.0502 0.3265 1.8329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330495016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = -125.271581 kcal Electronic energy + Delta-G solvation = -21214.148984 eV Core-core repulsion = 17998.316270 eV Total energy + Delta-G solvation = -3215.832714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98218 -38.01835 -37.09708 -37.02712 -35.23817 -33.43753 -32.04566 -30.91829 -29.79936 -27.65609 -24.53766 -23.75854 -22.73625 -21.87407 -20.82086 -19.69503 -18.90916 -17.89053 -17.08201 -16.86920 -16.71177 -16.39961 -16.03382 -15.64500 -15.51499 -15.18578 -14.86828 -14.56879 -13.97688 -13.88352 -13.84021 -13.62989 -13.36354 -13.32596 -13.10811 -13.03182 -12.80687 -12.70700 -12.50018 -12.27090 -12.10342 -11.86529 -11.81766 -11.71141 -11.57593 -11.45441 -11.33131 -11.17680 -10.77300 -10.76753 -9.36603 -8.30070 -6.34823 -0.92441 1.35067 1.37695 1.49985 1.86153 2.35994 2.68373 3.04951 3.07083 3.11696 3.54080 3.71170 3.78933 4.08145 4.13184 4.16777 4.21788 4.30230 4.35115 4.38072 4.43687 4.46606 4.56338 4.67195 4.82787 4.89840 4.93299 4.98365 5.02040 5.08671 5.09909 5.14891 5.26662 5.31295 5.47400 5.52954 5.59997 5.65759 6.12724 6.29084 6.45599 6.73673 7.29773 8.87125 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.002716 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.637166 B =10306.308203 C =10623.484383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.411 3.589 3 O -0.984 6.984 4 O -0.991 6.991 5 C -0.553 4.553 6 H 0.165 0.835 7 C -0.115 4.115 8 C -0.108 4.108 9 C -0.114 4.114 10 C 0.096 3.904 11 H 0.052 0.948 12 N -0.698 5.698 13 C 0.072 3.928 14 C -0.092 4.092 15 C -0.009 4.009 16 C -0.536 4.536 17 H 0.027 0.973 18 C -0.001 4.001 19 N -0.954 5.954 20 Si 0.957 3.043 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.244 1.244 24 C -0.115 4.115 25 H 0.158 0.842 26 H 0.138 0.862 27 H 0.157 0.843 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.342 0.658 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.021 0.979 40 H 0.019 0.981 41 H 0.266 0.734 42 H 0.073 0.927 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.912 7.028 -10.592 34.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.600 3.400 3 O -0.981 6.981 4 O -0.989 6.989 5 C -0.663 4.663 6 H 0.182 0.818 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.152 4.152 10 C -0.014 4.014 11 H 0.070 0.930 12 N -0.330 5.330 13 C -0.057 4.057 14 C -0.131 4.131 15 C -0.047 4.047 16 C -0.574 4.574 17 H 0.046 0.954 18 C -0.197 4.197 19 N -0.595 5.595 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.167 1.167 24 C -0.154 4.154 25 H 0.177 0.823 26 H 0.156 0.844 27 H 0.175 0.825 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -31.198 7.754 -10.733 33.891 hybrid contribution 0.373 -1.545 0.364 1.630 sum -30.825 6.209 -10.369 33.110 Atomic orbital electron populations 1.30103 1.20813 1.14280 1.13645 1.07862 0.80618 0.74369 0.77114 1.93538 1.81210 1.36340 1.86994 1.93541 1.81449 1.67778 1.56090 1.30073 1.03370 1.14117 1.18767 0.81772 1.21665 1.01612 0.98997 0.93029 1.21466 0.94309 1.02212 0.96677 1.21600 0.95777 1.00349 0.97508 1.21489 0.87293 0.98365 0.94300 0.93046 1.60509 1.05710 1.49791 1.16940 1.21909 0.95082 0.91959 0.96705 1.21283 0.94458 0.98621 0.98695 1.19476 0.93904 0.95504 0.95784 1.21531 0.93479 1.15828 1.26527 0.95446 1.26116 0.96058 1.00165 0.97346 1.70082 1.11200 1.39002 1.39175 0.85565 0.79841 0.78834 0.77822 1.19061 1.20927 1.16728 1.21518 0.92583 1.03212 0.98041 0.82335 0.84398 0.82455 0.86420 0.90267 0.89793 0.90551 0.92144 0.92698 0.83907 0.91100 0.94947 0.93688 0.93424 0.96062 0.96277 0.92474 0.90865 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.17 10.01 113.37 1.14 -0.03 16 2 S 2.41 31.09 4.90 -56.49 -0.28 30.82 16 3 O -0.98 -21.27 18.06 -127.37 -2.30 -23.57 16 4 O -0.99 -21.90 18.10 -127.37 -2.30 -24.21 16 5 C -0.55 -5.57 2.62 30.59 0.08 -5.49 16 6 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 7 C -0.12 -0.82 4.91 30.60 0.15 -0.67 16 8 C -0.11 -1.09 5.92 30.60 0.18 -0.91 16 9 C -0.11 -2.07 5.42 30.59 0.17 -1.90 16 10 C 0.10 1.94 2.49 44.91 0.11 2.05 16 11 H 0.05 0.99 7.80 -2.39 -0.02 0.97 16 12 N -0.70 -18.63 6.31 -491.57 -3.10 -21.73 16 13 C 0.07 2.23 5.48 86.30 0.47 2.71 16 14 C -0.09 -3.71 5.41 30.59 0.17 -3.55 16 15 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 16 C -0.54 -31.95 9.66 25.60 0.25 -31.70 16 17 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 18 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 19 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 20 Si 0.96 44.74 27.47 68.60 1.88 46.62 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 24 C -0.11 -2.03 4.47 30.59 0.14 -1.89 16 25 H 0.16 -0.49 6.77 -2.39 -0.02 -0.50 16 26 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.16 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.12 -0.14 6.39 -2.39 -0.02 -0.16 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.12 7.45 -2.39 -0.02 1.10 16 34 H 0.34 8.88 8.35 -89.70 -0.75 8.13 16 35 H 0.07 2.15 7.43 -2.39 -0.02 2.13 16 36 H 0.03 0.95 8.05 -2.39 -0.02 0.93 16 37 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 40 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -83.75 348.33 -2.20 -85.95 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.17 Total: 8.36 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 3.43 Total: -41.24 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.80 Total: -82.72 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -4.61 Total: -47.78 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Atomic # 16 Polarization: 31.09 SS G_CDS: -0.28 Total: 30.82 kcal Total: -83.75 -2.20 -85.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330495016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.324 kcal (2) G-P(sol) polarization free energy of solvation -83.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds