Wall clock time and date at job start Tue Mar 31 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00133 * 2 1 4 4 H 1.09003 * 110.05386 * 331.41506 * 3 2 1 5 5 C 1.53877 * 110.03433 * 92.83397 * 3 2 1 6 6 C 1.54268 * 106.59672 * 119.28390 * 5 3 2 7 7 C 1.54892 * 104.19560 * 23.61486 * 6 5 3 8 8 H 1.08999 * 110.75861 * 80.36855 * 7 6 5 9 9 N 1.46501 * 110.90702 * 203.66975 * 7 6 5 10 10 C 1.34783 * 119.99753 * 270.94636 * 9 7 6 11 11 O 1.21579 * 120.00095 * 0.02562 * 10 9 7 12 12 C 1.47643 * 119.99963 * 180.02562 * 10 9 7 13 13 C 1.40011 * 119.89292 * 359.72442 * 12 10 9 14 14 C 1.36323 * 120.10704 * 179.71946 * 13 12 10 15 15 C 1.40892 * 119.88632 * 0.55454 * 14 13 12 16 16 C 1.41108 * 120.10169 * 179.73919 * 15 14 13 17 17 H 1.08001 * 120.00183 * 204.62852 * 16 15 14 18 18 C 1.40226 * 120.00081 * 24.62693 * 16 15 14 19 19 N 1.30646 * 119.99699 * 17.88135 * 18 16 15 20 20 Si 1.86796 * 120.00091 * 197.88418 * 18 16 15 21 21 H 1.48503 * 109.46943 * 60.00043 * 20 18 16 22 22 H 1.48506 * 109.47286 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47287 * 299.99941 * 20 18 16 24 24 C 1.40883 * 119.79452 * 359.72245 * 15 14 13 25 25 C 1.36321 * 119.89367 * 359.97438 * 24 15 14 26 26 C 1.54269 * 110.03235 * 210.00101 * 3 2 1 27 27 H 1.09008 * 109.47315 * 300.00426 * 1 2 3 28 28 H 1.09002 * 109.47367 * 59.99771 * 1 2 3 29 29 H 1.08992 * 109.47454 * 180.02562 * 1 2 3 30 30 H 1.09003 * 110.03168 * 238.56967 * 5 3 2 31 31 H 1.08992 * 110.02913 * 359.97438 * 5 3 2 32 32 H 1.08991 * 110.48617 * 264.92937 * 6 5 3 33 33 H 1.09005 * 110.48157 * 142.28763 * 6 5 3 34 34 H 0.97003 * 120.00466 * 90.95445 * 9 7 6 35 35 H 1.08002 * 119.95095 * 359.97438 * 13 12 10 36 36 H 1.07997 * 120.05652 * 180.27710 * 14 13 12 37 37 H 0.97005 * 120.00055 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.05608 * 180.02562 * 24 15 14 39 39 H 1.07996 * 119.94761 * 180.02562 * 25 24 15 40 40 H 1.08998 * 110.48478 * 98.42789 * 26 3 2 41 41 H 1.08999 * 110.59863 * 335.83669 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0126 -0.4899 5 6 2.2899 1.7580 1.4439 6 6 3.8117 1.9893 1.5462 7 6 4.2539 2.2590 0.0864 8 1 4.0445 3.2907 -0.1963 9 7 5.6747 1.9511 -0.0948 10 6 6.6038 2.9021 0.1263 11 8 6.2629 4.0153 0.4766 12 6 8.0357 2.5920 -0.0569 13 6 8.4261 1.3077 -0.4548 14 6 9.7466 1.0182 -0.6308 15 6 10.7197 2.0107 -0.4003 16 6 12.0881 1.7144 -0.5757 17 1 12.8366 2.2866 -0.0477 18 6 12.4762 0.6770 -1.4357 19 7 11.6381 0.2197 -2.3274 20 14 14.1916 -0.0510 -1.3062 21 1 14.3871 -0.6188 0.0520 22 1 14.3512 -1.1254 -2.3190 23 1 15.2000 1.0118 -1.5483 24 6 10.3222 3.2999 0.0056 25 6 8.9989 3.5817 0.1729 26 6 3.3718 1.2777 -0.7247 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.7563 2.6848 1.6547 31 1 1.9819 0.9820 2.1446 32 1 4.3072 1.1007 1.9369 33 1 4.0247 2.8537 2.1751 34 1 5.9468 1.0629 -0.3741 35 1 7.6798 0.5462 -0.6266 36 1 10.0466 0.0285 -0.9421 37 1 11.9066 -0.4977 -2.9226 38 1 11.0645 4.0640 0.1831 39 1 8.6932 4.5698 0.4837 40 1 3.2637 1.6227 -1.7530 41 1 3.7976 0.2745 -0.7026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330980699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:43 Heat of formation + Delta-G solvation = -81.548472 kcal Electronic energy + Delta-G solvation = -22094.670940 eV Core-core repulsion = 18745.290251 eV Total energy + Delta-G solvation = -3349.380689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.66604 -38.60295 -37.16789 -36.01387 -33.86420 -32.92961 -30.19490 -29.43413 -28.85424 -27.56642 -26.26585 -25.46726 -22.16594 -21.07168 -20.63178 -20.40717 -19.54420 -17.52185 -17.07400 -16.85405 -16.03054 -15.61058 -15.27707 -15.03169 -14.30766 -14.07374 -14.00089 -13.86376 -13.27332 -13.20753 -12.77306 -12.32753 -12.12510 -12.06608 -11.94767 -11.78742 -11.55104 -11.40301 -11.29757 -11.23630 -11.00340 -10.87114 -10.64063 -10.52839 -10.05348 -9.77690 -9.54991 -9.34068 -8.95060 -8.56096 -7.71307 -7.53675 -7.03108 -4.59805 2.24435 2.92727 2.94636 2.98746 3.04491 3.45750 3.74006 3.86044 3.89957 4.45505 4.55214 4.62598 4.81650 5.06122 5.10208 5.24583 5.30997 5.38726 5.40185 5.50125 5.58070 5.64875 5.75742 5.86539 5.94323 6.02491 6.06282 6.22328 6.32738 6.35739 6.77615 6.83196 6.97224 7.03087 7.09080 7.14509 7.44199 7.66513 7.80294 7.86499 8.07771 8.26641 8.40377 8.63584 8.76039 9.09771 9.88885 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027987 B = 0.002982 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.212805 B = 9388.171080 C =10130.951131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.087 3.913 4 H 0.066 0.934 5 C -0.144 4.144 6 C -0.133 4.133 7 C 0.147 3.853 8 H 0.093 0.907 9 N -0.734 5.734 10 C 0.573 3.427 11 O -0.576 6.576 12 C -0.285 4.285 13 C -0.062 4.062 14 C -0.179 4.179 15 C 0.129 3.871 16 C -0.443 4.443 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.240 4.240 25 C -0.022 4.022 26 C -0.129 4.129 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.287 0.713 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.593 -3.013 1.932 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.029 3.971 4 H 0.084 0.916 5 C -0.183 4.183 6 C -0.172 4.172 7 C 0.041 3.959 8 H 0.111 0.889 9 N -0.386 5.386 10 C 0.368 3.632 11 O -0.458 6.458 12 C -0.289 4.289 13 C -0.082 4.082 14 C -0.198 4.198 15 C 0.125 3.875 16 C -0.471 4.471 17 H 0.102 0.898 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.737 3.263 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.259 4.259 25 C -0.041 4.041 26 C -0.167 4.167 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.748 -2.562 1.958 15.096 hybrid contribution 0.581 -0.637 -0.222 0.890 sum -14.167 -3.199 1.735 14.627 Atomic orbital electron populations 1.22768 0.81421 1.02586 0.99854 1.87960 1.19365 1.27873 1.94980 1.22742 0.94556 0.84332 0.95514 0.91609 1.22645 0.97199 1.01461 0.96950 1.22722 0.94331 1.02352 0.97752 1.21673 0.80946 0.99212 0.94082 0.88930 1.45878 1.05075 1.15377 1.72255 1.18596 0.86261 0.83351 0.74977 1.90621 1.82781 1.22715 1.49680 1.18900 0.90416 0.96820 1.22785 1.20481 0.95996 0.94072 0.97604 1.20979 0.91586 1.00054 1.07158 1.17783 0.93400 0.90114 0.86164 1.19817 0.93030 1.12907 1.21310 0.89753 1.26099 1.00102 0.95209 0.93285 1.69738 1.36878 1.20910 1.11952 0.86260 0.81345 0.79225 0.79432 1.18477 1.20055 1.18664 1.20715 0.94482 0.96761 1.13961 1.20359 0.92525 0.96791 0.94422 1.22681 0.93914 1.01033 0.99052 0.94145 0.94119 0.89796 0.91362 0.90684 0.91052 0.90990 0.76658 0.89304 0.86199 0.90173 0.88405 0.88133 0.90480 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.38 -4.25 10.26 -35.23 -0.36 -4.62 16 3 C 0.09 0.91 3.39 -25.61 -0.09 0.82 16 4 H 0.07 0.59 7.81 -51.93 -0.41 0.19 16 5 C -0.14 -1.52 6.61 -25.61 -0.17 -1.69 16 6 C -0.13 -1.73 6.52 -25.07 -0.16 -1.90 16 7 C 0.15 2.07 3.22 -65.94 -0.21 1.86 16 8 H 0.09 1.43 7.62 -51.93 -0.40 1.03 16 9 N -0.73 -12.31 5.15 -52.88 -0.27 -12.59 16 10 C 0.57 12.18 7.76 -12.42 -0.10 12.08 16 11 O -0.58 -13.63 16.01 5.30 0.08 -13.54 16 12 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 13 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 14 C -0.18 -4.38 8.64 -39.27 -0.34 -4.72 16 15 C 0.13 3.29 5.58 -106.80 -0.60 2.69 16 16 C -0.44 -11.03 9.04 -37.75 -0.34 -11.37 16 17 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 18 C 0.07 1.73 5.14 -17.31 -0.09 1.65 16 19 N -0.77 -18.49 10.95 55.56 0.61 -17.88 16 20 Si 0.91 17.28 29.60 -169.99 -5.03 12.25 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 22 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 25 C -0.02 -0.52 9.52 -39.61 -0.38 -0.89 16 26 C -0.13 -1.49 6.17 -25.07 -0.15 -1.64 16 27 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 28 H 0.04 0.27 8.10 -51.93 -0.42 -0.15 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 6.06 6.55 -40.82 -0.27 5.79 16 35 H 0.09 1.67 6.37 -52.49 -0.33 1.34 16 36 H 0.12 2.98 6.15 -52.49 -0.32 2.65 16 37 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 38 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -28.53 340.06 -8.63 -37.16 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.88 Total: 10.99 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -2.90 Total: -16.90 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.34 Total: -30.47 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.28 Total: -18.16 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.53 -8.63 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330980699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.391 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds