Wall clock time and date at job start Tue Mar 31 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00133 * 2 1 4 4 H 1.09003 * 110.05386 * 331.41506 * 3 2 1 5 5 C 1.53877 * 110.03433 * 92.83397 * 3 2 1 6 6 C 1.54268 * 106.59672 * 119.28390 * 5 3 2 7 7 C 1.54892 * 104.19560 * 23.61486 * 6 5 3 8 8 H 1.08999 * 110.75861 * 80.36855 * 7 6 5 9 9 N 1.46501 * 110.90702 * 203.66975 * 7 6 5 10 10 C 1.34783 * 119.99753 * 270.94636 * 9 7 6 11 11 O 1.21579 * 120.00095 * 0.02562 * 10 9 7 12 12 C 1.47643 * 119.99963 * 180.02562 * 10 9 7 13 13 C 1.40011 * 119.89292 * 359.72442 * 12 10 9 14 14 C 1.36323 * 120.10704 * 179.71946 * 13 12 10 15 15 C 1.40892 * 119.88632 * 0.55454 * 14 13 12 16 16 C 1.41108 * 120.10169 * 179.73919 * 15 14 13 17 17 H 1.08001 * 120.00183 * 204.62852 * 16 15 14 18 18 C 1.40226 * 120.00081 * 24.62693 * 16 15 14 19 19 N 1.30646 * 119.99699 * 17.88135 * 18 16 15 20 20 Si 1.86796 * 120.00091 * 197.88418 * 18 16 15 21 21 H 1.48503 * 109.46943 * 60.00043 * 20 18 16 22 22 H 1.48506 * 109.47286 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47287 * 299.99941 * 20 18 16 24 24 C 1.40883 * 119.79452 * 359.72245 * 15 14 13 25 25 C 1.36321 * 119.89367 * 359.97438 * 24 15 14 26 26 C 1.54269 * 110.03235 * 210.00101 * 3 2 1 27 27 H 1.09008 * 109.47315 * 300.00426 * 1 2 3 28 28 H 1.09002 * 109.47367 * 59.99771 * 1 2 3 29 29 H 1.08992 * 109.47454 * 180.02562 * 1 2 3 30 30 H 1.09003 * 110.03168 * 238.56967 * 5 3 2 31 31 H 1.08992 * 110.02913 * 359.97438 * 5 3 2 32 32 H 1.08991 * 110.48617 * 264.92937 * 6 5 3 33 33 H 1.09005 * 110.48157 * 142.28763 * 6 5 3 34 34 H 0.97003 * 120.00466 * 90.95445 * 9 7 6 35 35 H 1.08002 * 119.95095 * 359.97438 * 13 12 10 36 36 H 1.07997 * 120.05652 * 180.27710 * 14 13 12 37 37 H 0.97005 * 120.00055 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.05608 * 180.02562 * 24 15 14 39 39 H 1.07996 * 119.94761 * 180.02562 * 25 24 15 40 40 H 1.08998 * 110.48478 * 98.42789 * 26 3 2 41 41 H 1.08999 * 110.59863 * 335.83669 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0126 -0.4899 5 6 2.2899 1.7580 1.4439 6 6 3.8117 1.9893 1.5462 7 6 4.2539 2.2590 0.0864 8 1 4.0445 3.2907 -0.1963 9 7 5.6747 1.9511 -0.0948 10 6 6.6038 2.9021 0.1263 11 8 6.2629 4.0153 0.4766 12 6 8.0357 2.5920 -0.0569 13 6 8.4261 1.3077 -0.4548 14 6 9.7466 1.0182 -0.6308 15 6 10.7197 2.0107 -0.4003 16 6 12.0881 1.7144 -0.5757 17 1 12.8366 2.2866 -0.0477 18 6 12.4762 0.6770 -1.4357 19 7 11.6381 0.2197 -2.3274 20 14 14.1916 -0.0510 -1.3062 21 1 14.3871 -0.6188 0.0520 22 1 14.3512 -1.1254 -2.3190 23 1 15.2000 1.0118 -1.5483 24 6 10.3222 3.2999 0.0056 25 6 8.9989 3.5817 0.1729 26 6 3.3718 1.2777 -0.7247 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.7563 2.6848 1.6547 31 1 1.9819 0.9820 2.1446 32 1 4.3072 1.1007 1.9369 33 1 4.0247 2.8537 2.1751 34 1 5.9468 1.0629 -0.3741 35 1 7.6798 0.5462 -0.6266 36 1 10.0466 0.0285 -0.9421 37 1 11.9066 -0.4977 -2.9226 38 1 11.0645 4.0640 0.1831 39 1 8.6932 4.5698 0.4837 40 1 3.2637 1.6227 -1.7530 41 1 3.7976 0.2745 -0.7026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330980699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:41 Heat of formation + Delta-G solvation = -97.782522 kcal Electronic energy + Delta-G solvation = -22095.374901 eV Core-core repulsion = 18745.290251 eV Total energy + Delta-G solvation = -3350.084650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.02604 -39.83638 -38.83260 -37.14719 -35.66601 -34.31878 -31.95071 -31.29123 -29.77365 -28.72629 -27.41826 -26.70854 -23.84233 -22.83482 -21.74165 -21.65527 -20.99101 -19.36004 -18.42821 -18.00083 -17.23997 -17.03561 -16.53982 -15.89958 -15.74339 -15.64974 -15.33636 -15.20105 -14.92697 -14.47586 -14.31646 -13.90897 -13.71416 -13.24336 -13.12954 -13.02716 -12.84004 -12.73667 -12.61567 -12.41318 -12.35446 -12.26630 -11.88100 -11.77189 -11.42732 -11.35959 -11.11186 -10.69839 -10.52546 -10.01142 -9.57035 -9.40221 -8.79097 -6.48045 0.44950 1.15363 1.39138 1.44907 1.52449 2.12379 2.18306 2.31775 2.78585 2.92162 3.53330 3.61862 3.70818 3.93227 4.23480 4.28843 4.34726 4.37427 4.43607 4.45219 4.49076 4.53713 4.63182 4.71987 4.85183 4.92430 4.92823 5.00222 5.03181 5.04480 5.16227 5.19873 5.23022 5.30695 5.58177 5.66167 5.83280 5.95347 5.99734 6.23031 6.32002 6.54142 6.72239 6.77395 6.89383 7.45716 8.15975 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027987 B = 0.002982 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.212805 B = 9388.171080 C =10130.951131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.090 3.910 4 H 0.085 0.915 5 C -0.136 4.136 6 C -0.131 4.131 7 C 0.140 3.860 8 H 0.081 0.919 9 N -0.718 5.718 10 C 0.574 3.426 11 O -0.604 6.604 12 C -0.294 4.294 13 C -0.053 4.053 14 C -0.199 4.199 15 C 0.101 3.899 16 C -0.474 4.474 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.798 5.798 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.259 1.259 24 C -0.254 4.254 25 C -0.032 4.032 26 C -0.121 4.121 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.407 0.593 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.297 0.703 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.709 -4.320 1.596 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C 0.031 3.969 4 H 0.103 0.897 5 C -0.174 4.174 6 C -0.170 4.170 7 C 0.035 3.965 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.367 3.633 11 O -0.489 6.489 12 C -0.299 4.299 13 C -0.072 4.072 14 C -0.218 4.218 15 C 0.098 3.902 16 C -0.501 4.501 17 H 0.104 0.896 18 C -0.181 4.181 19 N -0.421 5.421 20 Si 0.807 3.193 21 H -0.183 1.183 22 H -0.188 1.188 23 H -0.183 1.183 24 C -0.274 4.274 25 C -0.052 4.052 26 C -0.159 4.159 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.244 0.756 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.910 -3.892 1.614 16.458 hybrid contribution 0.810 -0.220 -0.123 0.848 sum -15.099 -4.111 1.491 15.720 Atomic orbital electron populations 1.22971 0.79719 1.03710 1.00872 1.87926 1.21280 1.28022 1.95077 1.22707 0.94220 0.84794 0.95131 0.89727 1.22601 0.95027 1.02379 0.97423 1.22664 0.96460 1.01385 0.96483 1.21868 0.79498 0.99482 0.95633 0.90124 1.45753 1.05804 1.14794 1.70539 1.18386 0.86239 0.83619 0.75035 1.90602 1.83104 1.24002 1.51146 1.19194 0.91532 0.96905 1.22234 1.20730 0.95984 0.94551 0.95974 1.21020 0.92477 0.99718 1.08579 1.18137 0.94339 0.90768 0.86953 1.20094 0.93015 1.14527 1.22472 0.89650 1.26932 1.04183 0.94801 0.92228 1.69759 1.38846 1.21225 1.12268 0.85156 0.76014 0.78512 0.79576 1.18261 1.18757 1.18265 1.20860 0.95020 0.96877 1.14618 1.20510 0.92697 0.97320 0.94646 1.22624 0.94049 0.99996 0.99281 0.93184 0.93019 0.88749 0.89911 0.90247 0.91556 0.92552 0.75608 0.85930 0.86819 0.89152 0.87793 0.87921 0.89478 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.85 113.37 1.23 1.52 16 2 O -0.40 -7.91 10.26 -148.98 -1.53 -9.44 16 3 C 0.09 1.64 3.39 31.32 0.11 1.74 16 4 H 0.08 1.25 7.81 -2.39 -0.02 1.23 16 5 C -0.14 -2.56 6.61 31.32 0.21 -2.35 16 6 C -0.13 -3.28 6.52 31.67 0.21 -3.08 16 7 C 0.14 3.79 3.22 46.28 0.15 3.94 16 8 H 0.08 2.42 7.62 -2.39 -0.02 2.41 16 9 N -0.72 -23.36 5.15 -439.47 -2.26 -25.62 16 10 C 0.57 24.26 7.76 86.73 0.67 24.93 16 11 O -0.60 -28.77 16.01 -3.96 -0.06 -28.83 16 12 C -0.29 -13.54 5.89 -19.94 -0.12 -13.66 16 13 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 14 C -0.20 -9.88 8.64 22.47 0.19 -9.69 16 15 C 0.10 5.30 5.58 -21.28 -0.12 5.18 16 16 C -0.47 -24.04 9.04 23.46 0.21 -23.83 16 17 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 18 C 0.04 1.75 5.14 85.35 0.44 2.19 16 19 N -0.80 -38.20 10.95 21.87 0.24 -37.96 16 20 Si 0.99 34.84 29.60 68.60 2.03 36.87 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 22 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 23 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 24 C -0.25 -12.74 9.73 22.47 0.22 -12.53 16 25 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 26 C -0.12 -2.55 6.17 31.67 0.20 -2.35 16 27 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.05 0.54 8.10 -2.39 -0.02 0.52 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.45 7.95 -2.39 -0.02 1.43 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.41 11.71 6.55 -92.71 -0.61 11.10 16 35 H 0.12 4.43 6.37 -2.91 -0.02 4.41 16 36 H 0.11 5.72 6.15 -2.91 -0.02 5.70 16 37 H 0.30 12.66 8.29 -92.70 -0.77 11.90 16 38 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.81 7.95 -2.39 -0.02 1.79 16 Total: -1.00 -61.83 340.06 2.86 -58.97 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.43 Total: 37.52 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 4.02 Total: -31.49 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -2.02 Total: -63.59 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -1.59 Total: -38.27 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -61.83 2.86 -58.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330980699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.817 kcal (2) G-P(sol) polarization free energy of solvation -61.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds