Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00245 * 2 1 4 4 H 1.09008 * 110.81481 * 31.88308 * 3 2 1 5 5 C 1.54887 * 110.75929 * 268.54838 * 3 2 1 6 6 C 1.54267 * 104.19902 * 203.74317 * 5 3 2 7 7 C 1.53874 * 106.59609 * 23.60580 * 6 5 3 8 8 H 1.09002 * 110.03320 * 240.66454 * 7 6 5 9 9 N 1.46497 * 110.02759 * 119.28737 * 7 6 5 10 10 C 1.34777 * 120.00013 * 86.45650 * 9 7 6 11 11 O 1.21582 * 120.00397 * 359.97438 * 10 9 7 12 12 C 1.47652 * 119.99897 * 180.27136 * 10 9 7 13 13 C 1.40011 * 119.89334 * 359.45594 * 12 10 9 14 14 C 1.36319 * 120.10200 * 179.71812 * 13 12 10 15 15 C 1.40885 * 119.89372 * 0.56908 * 14 13 12 16 16 C 1.41105 * 120.10678 * 179.67642 * 15 14 13 17 17 H 1.08002 * 120.00370 * 155.08359 * 16 15 14 18 18 C 1.40230 * 120.00176 * 335.09340 * 16 15 14 19 19 N 1.30648 * 119.99271 * 342.20028 * 18 16 15 20 20 Si 1.86797 * 120.00529 * 162.20619 * 18 16 15 21 21 H 1.48494 * 109.47058 * 94.65716 * 20 18 16 22 22 H 1.48496 * 109.47141 * 214.65850 * 20 18 16 23 23 H 1.48498 * 109.46846 * 334.66167 * 20 18 16 24 24 C 1.40892 * 119.79250 * 359.69783 * 15 14 13 25 25 C 1.36316 * 119.89105 * 0.02562 * 24 15 14 26 26 C 1.54261 * 106.60007 * 0.02562 * 7 6 5 27 27 H 1.09008 * 109.47317 * 299.99900 * 1 2 3 28 28 H 1.08998 * 109.47453 * 59.99765 * 1 2 3 29 29 H 1.09001 * 109.47714 * 180.02562 * 1 2 3 30 30 H 1.08998 * 110.48526 * 85.05869 * 5 3 2 31 31 H 1.09001 * 110.59687 * 322.47955 * 5 3 2 32 32 H 1.09004 * 110.02840 * 264.32709 * 6 5 3 33 33 H 1.08993 * 110.03391 * 142.89516 * 6 5 3 34 34 H 0.96998 * 120.00327 * 266.44974 * 9 7 6 35 35 H 1.08001 * 119.94819 * 359.97047 * 13 12 10 36 36 H 1.08005 * 120.05617 * 180.26747 * 14 13 12 37 37 H 0.97001 * 119.99869 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.05681 * 179.97438 * 24 15 14 39 39 H 1.08002 * 119.94757 * 179.97438 * 25 24 15 40 40 H 1.08997 * 110.48947 * 95.06448 * 26 7 6 41 41 H 1.09003 * 110.48709 * 217.70906 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3774 2.0112 0.5382 5 6 2.2670 1.7920 -1.4479 6 6 3.3892 2.8404 -1.3013 7 6 4.1316 2.5097 0.0054 8 1 4.0638 3.3501 0.6963 9 7 5.5363 2.2063 -0.2787 10 6 6.4405 3.2033 -0.3482 11 8 6.0903 4.3548 -0.1755 12 6 7.8552 2.8980 -0.6405 13 6 8.2571 1.5708 -0.8338 14 6 9.5611 1.2846 -1.1096 15 6 10.5070 2.3257 -1.1880 16 6 11.8592 2.0338 -1.4664 17 1 12.4922 2.7844 -1.9163 18 6 12.3813 0.7691 -1.1592 19 7 11.7530 -0.0104 -0.3199 20 14 13.9748 0.1991 -1.9497 21 1 15.1127 0.5048 -1.0458 22 1 13.9125 -1.2651 -2.1893 23 1 14.1662 0.9046 -3.2423 24 6 10.0988 3.6591 -0.9872 25 6 8.7916 3.9361 -0.7175 26 6 3.4351 1.2717 0.6068 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.3686 2.2500 -1.8614 31 1 2.5970 0.9655 -2.0773 32 1 2.9602 3.8408 -1.2441 33 1 4.0740 2.7750 -2.1467 34 1 5.8158 1.2877 -0.4168 35 1 7.5321 0.7730 -0.7684 36 1 9.8694 0.2609 -1.2628 37 1 12.1138 -0.8855 -0.1075 38 1 10.8205 4.4604 -1.0459 39 1 8.4778 4.9579 -0.5630 40 1 3.9548 0.3603 0.3110 41 1 3.3888 1.3501 1.6930 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330980700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = -79.891778 kcal Electronic energy + Delta-G solvation = -22137.812127 eV Core-core repulsion = 18788.503278 eV Total energy + Delta-G solvation = -3349.308850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.69947 -38.55414 -37.18656 -36.07779 -33.86256 -32.87756 -30.19308 -29.43615 -28.89067 -27.58801 -26.22575 -25.43126 -22.15496 -21.11344 -20.94099 -20.17279 -19.44161 -17.52380 -17.14750 -16.78804 -16.02958 -15.65987 -15.28477 -15.06264 -14.43682 -14.06298 -13.89328 -13.71260 -13.35454 -13.19387 -12.77509 -12.60061 -12.09065 -12.00827 -11.85696 -11.75298 -11.54426 -11.41790 -11.33480 -11.24070 -11.00010 -10.90503 -10.63176 -10.54135 -10.04939 -9.73611 -9.55428 -9.34290 -8.94262 -8.57980 -7.71333 -7.53531 -7.03286 -4.59722 2.24057 2.90667 2.94891 3.01135 3.04313 3.44659 3.74123 3.85830 3.90522 4.45189 4.55959 4.61450 4.79781 5.04735 5.08932 5.20006 5.35056 5.39119 5.41130 5.50675 5.56885 5.60590 5.73321 5.89033 5.95162 6.03847 6.06583 6.22005 6.32343 6.32581 6.77475 6.83182 6.97699 7.01693 7.09769 7.14298 7.44248 7.66335 7.80040 7.86619 8.07719 8.26332 8.40432 8.63587 8.75924 9.09711 9.88861 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026066 B = 0.003056 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.954598 B = 9160.629218 C = 9931.555042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.083 3.917 4 H 0.071 0.929 5 C -0.144 4.144 6 C -0.133 4.133 7 C 0.147 3.853 8 H 0.089 0.911 9 N -0.735 5.735 10 C 0.572 3.428 11 O -0.576 6.576 12 C -0.285 4.285 13 C -0.062 4.062 14 C -0.179 4.179 15 C 0.129 3.871 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.913 3.087 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.239 4.239 25 C -0.022 4.022 26 C -0.125 4.125 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.724 -2.794 -0.191 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.025 3.975 4 H 0.089 0.911 5 C -0.182 4.182 6 C -0.172 4.172 7 C 0.042 3.958 8 H 0.107 0.893 9 N -0.388 5.388 10 C 0.367 3.633 11 O -0.458 6.458 12 C -0.289 4.289 13 C -0.081 4.081 14 C -0.198 4.198 15 C 0.126 3.874 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.736 3.264 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.259 4.259 25 C -0.041 4.041 26 C -0.163 4.163 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.233 0.767 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.840 -2.380 0.069 15.030 hybrid contribution 0.590 -0.629 -0.305 0.915 sum -14.250 -3.009 -0.236 14.566 Atomic orbital electron populations 1.22760 0.81299 1.02609 0.99887 1.87913 1.19469 1.27636 1.94937 1.23132 0.94304 0.84273 0.95823 0.91092 1.22850 0.98825 0.99377 0.97192 1.22550 0.97234 0.98617 0.98819 1.21303 0.81392 0.97070 0.96062 0.89275 1.46065 1.07139 1.10550 1.75058 1.18601 0.85994 0.84073 0.74613 1.90623 1.81568 1.20761 1.52835 1.18911 0.91468 0.94402 1.24143 1.20477 0.95977 0.93640 0.98031 1.20973 0.91531 0.99857 1.07417 1.17785 0.93146 0.91041 0.85475 1.19842 0.95703 0.97643 1.33863 0.89733 1.26102 0.99642 0.96006 0.92942 1.69747 1.37893 1.09177 1.22663 0.86215 0.80778 0.78650 0.80759 1.19244 1.19738 1.18097 1.20721 0.95125 0.96549 1.13502 1.20361 0.92556 0.96876 0.94322 1.22646 0.94179 0.98904 1.00577 0.94113 0.94108 0.89760 0.91751 0.90561 0.91231 0.90651 0.76690 0.89311 0.86243 0.90246 0.88404 0.88139 0.89754 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.89 101.05 1.10 1.34 16 2 O -0.38 -4.23 10.49 -35.23 -0.37 -4.60 16 3 C 0.08 0.86 3.35 -24.73 -0.08 0.78 16 4 H 0.07 0.65 7.89 -51.92 -0.41 0.24 16 5 C -0.14 -1.53 6.55 -25.07 -0.16 -1.69 16 6 C -0.13 -1.70 6.59 -25.61 -0.17 -1.87 16 7 C 0.15 2.06 3.23 -66.82 -0.22 1.85 16 8 H 0.09 1.36 7.61 -51.93 -0.39 0.97 16 9 N -0.74 -12.26 4.94 -53.73 -0.27 -12.53 16 10 C 0.57 12.11 7.75 -12.42 -0.10 12.01 16 11 O -0.58 -13.58 16.00 5.29 0.08 -13.49 16 12 C -0.28 -6.51 5.89 -104.72 -0.62 -7.13 16 13 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 14 C -0.18 -4.38 8.63 -39.27 -0.34 -4.72 16 15 C 0.13 3.29 5.57 -106.80 -0.60 2.69 16 16 C -0.44 -11.03 9.04 -37.75 -0.34 -11.38 16 17 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 18 C 0.07 1.73 5.13 -17.31 -0.09 1.65 16 19 N -0.77 -18.51 10.97 55.56 0.61 -17.90 16 20 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 24 C -0.24 -5.82 9.73 -39.27 -0.38 -6.21 16 25 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 26 C -0.12 -1.44 6.25 -25.06 -0.16 -1.60 16 27 H 0.04 0.27 8.11 -51.92 -0.42 -0.15 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 34 H 0.40 6.04 6.34 -40.82 -0.26 5.78 16 35 H 0.09 1.67 6.37 -52.49 -0.33 1.34 16 36 H 0.12 2.97 6.17 -52.48 -0.32 2.64 16 37 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 38 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 40 H 0.08 1.00 7.73 -51.93 -0.40 0.60 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -28.53 339.79 -8.62 -37.14 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.86 Total: 10.94 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.90 Total: -16.93 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.34 Total: -30.42 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.28 Total: -18.09 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.53 -8.62 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330980700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.749 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds