Wall clock time and date at job start Tue Mar 31 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00245 * 2 1 4 4 H 1.09008 * 110.81481 * 31.88308 * 3 2 1 5 5 C 1.54887 * 110.75929 * 268.54838 * 3 2 1 6 6 C 1.54267 * 104.19902 * 203.74317 * 5 3 2 7 7 C 1.53874 * 106.59609 * 23.60580 * 6 5 3 8 8 H 1.09002 * 110.03320 * 240.66454 * 7 6 5 9 9 N 1.46497 * 110.02759 * 119.28737 * 7 6 5 10 10 C 1.34777 * 120.00013 * 86.45650 * 9 7 6 11 11 O 1.21582 * 120.00397 * 359.97438 * 10 9 7 12 12 C 1.47652 * 119.99897 * 180.27136 * 10 9 7 13 13 C 1.40011 * 119.89334 * 359.45594 * 12 10 9 14 14 C 1.36319 * 120.10200 * 179.71812 * 13 12 10 15 15 C 1.40885 * 119.89372 * 0.56908 * 14 13 12 16 16 C 1.41105 * 120.10678 * 179.67642 * 15 14 13 17 17 H 1.08002 * 120.00370 * 155.08359 * 16 15 14 18 18 C 1.40230 * 120.00176 * 335.09340 * 16 15 14 19 19 N 1.30648 * 119.99271 * 342.20028 * 18 16 15 20 20 Si 1.86797 * 120.00529 * 162.20619 * 18 16 15 21 21 H 1.48494 * 109.47058 * 94.65716 * 20 18 16 22 22 H 1.48496 * 109.47141 * 214.65850 * 20 18 16 23 23 H 1.48498 * 109.46846 * 334.66167 * 20 18 16 24 24 C 1.40892 * 119.79250 * 359.69783 * 15 14 13 25 25 C 1.36316 * 119.89105 * 0.02562 * 24 15 14 26 26 C 1.54261 * 106.60007 * 0.02562 * 7 6 5 27 27 H 1.09008 * 109.47317 * 299.99900 * 1 2 3 28 28 H 1.08998 * 109.47453 * 59.99765 * 1 2 3 29 29 H 1.09001 * 109.47714 * 180.02562 * 1 2 3 30 30 H 1.08998 * 110.48526 * 85.05869 * 5 3 2 31 31 H 1.09001 * 110.59687 * 322.47955 * 5 3 2 32 32 H 1.09004 * 110.02840 * 264.32709 * 6 5 3 33 33 H 1.08993 * 110.03391 * 142.89516 * 6 5 3 34 34 H 0.96998 * 120.00327 * 266.44974 * 9 7 6 35 35 H 1.08001 * 119.94819 * 359.97047 * 13 12 10 36 36 H 1.08005 * 120.05617 * 180.26747 * 14 13 12 37 37 H 0.97001 * 119.99869 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.05681 * 179.97438 * 24 15 14 39 39 H 1.08002 * 119.94757 * 179.97438 * 25 24 15 40 40 H 1.08997 * 110.48947 * 95.06448 * 26 7 6 41 41 H 1.09003 * 110.48709 * 217.70906 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3774 2.0112 0.5382 5 6 2.2670 1.7920 -1.4479 6 6 3.3892 2.8404 -1.3013 7 6 4.1316 2.5097 0.0054 8 1 4.0638 3.3501 0.6963 9 7 5.5363 2.2063 -0.2787 10 6 6.4405 3.2033 -0.3482 11 8 6.0903 4.3548 -0.1755 12 6 7.8552 2.8980 -0.6405 13 6 8.2571 1.5708 -0.8338 14 6 9.5611 1.2846 -1.1096 15 6 10.5070 2.3257 -1.1880 16 6 11.8592 2.0338 -1.4664 17 1 12.4922 2.7844 -1.9163 18 6 12.3813 0.7691 -1.1592 19 7 11.7530 -0.0104 -0.3199 20 14 13.9748 0.1991 -1.9497 21 1 15.1127 0.5048 -1.0458 22 1 13.9125 -1.2651 -2.1893 23 1 14.1662 0.9046 -3.2423 24 6 10.0988 3.6591 -0.9872 25 6 8.7916 3.9361 -0.7175 26 6 3.4351 1.2717 0.6068 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.3686 2.2500 -1.8614 31 1 2.5970 0.9655 -2.0773 32 1 2.9602 3.8408 -1.2441 33 1 4.0740 2.7750 -2.1467 34 1 5.8158 1.2877 -0.4168 35 1 7.5321 0.7730 -0.7684 36 1 9.8694 0.2609 -1.2628 37 1 12.1138 -0.8855 -0.1075 38 1 10.8205 4.4604 -1.0459 39 1 8.4778 4.9579 -0.5630 40 1 3.9548 0.3603 0.3110 41 1 3.3888 1.3501 1.6930 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330980700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:44 Heat of formation + Delta-G solvation = -96.069424 kcal Electronic energy + Delta-G solvation = -22138.513643 eV Core-core repulsion = 18788.503278 eV Total energy + Delta-G solvation = -3350.010365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06724 -39.78918 -38.82530 -37.22223 -35.66472 -34.26682 -31.94645 -31.29368 -29.80660 -28.74425 -27.42459 -26.64376 -23.83954 -22.82154 -22.01506 -21.51389 -20.86726 -19.36179 -18.43475 -18.01046 -17.23839 -16.99384 -16.65439 -15.79739 -15.77052 -15.73756 -15.27908 -15.21331 -14.91906 -14.46702 -14.25427 -13.90455 -13.69970 -13.47864 -13.23087 -12.90485 -12.84415 -12.71845 -12.60456 -12.38452 -12.35481 -12.23320 -11.88032 -11.75971 -11.48133 -11.36223 -11.11411 -10.68123 -10.49217 -10.02833 -9.57203 -9.40058 -8.79358 -6.48052 0.44766 1.15091 1.38687 1.42590 1.55111 2.12147 2.18523 2.33275 2.78149 2.87269 3.55500 3.61643 3.70487 3.92998 4.25017 4.28432 4.30469 4.38083 4.43111 4.45732 4.50956 4.52602 4.62471 4.65895 4.85547 4.91659 4.92553 5.01488 5.03622 5.06228 5.16026 5.19689 5.23391 5.30390 5.58326 5.68640 5.83111 5.95108 5.99742 6.22916 6.30329 6.54122 6.71953 6.77332 6.89211 7.46001 8.16080 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026066 B = 0.003056 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.954598 B = 9160.629218 C = 9931.555042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.088 3.912 4 H 0.088 0.912 5 C -0.135 4.135 6 C -0.130 4.130 7 C 0.142 3.858 8 H 0.077 0.923 9 N -0.719 5.719 10 C 0.573 3.427 11 O -0.604 6.604 12 C -0.294 4.294 13 C -0.053 4.053 14 C -0.198 4.198 15 C 0.101 3.899 16 C -0.474 4.474 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.798 5.798 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.257 1.257 24 C -0.254 4.254 25 C -0.033 4.033 26 C -0.120 4.120 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.406 0.594 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.297 0.703 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.875 -4.115 -0.283 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.030 3.970 4 H 0.106 0.894 5 C -0.173 4.173 6 C -0.169 4.169 7 C 0.038 3.962 8 H 0.095 0.905 9 N -0.371 5.371 10 C 0.367 3.633 11 O -0.488 6.488 12 C -0.298 4.298 13 C -0.072 4.072 14 C -0.218 4.218 15 C 0.098 3.902 16 C -0.501 4.501 17 H 0.103 0.897 18 C -0.181 4.181 19 N -0.422 5.422 20 Si 0.807 3.193 21 H -0.186 1.186 22 H -0.186 1.186 23 H -0.181 1.181 24 C -0.274 4.274 25 C -0.052 4.052 26 C -0.158 4.158 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.243 0.757 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.036 -3.727 -0.014 16.464 hybrid contribution 0.832 -0.212 -0.232 0.889 sum -15.205 -3.939 -0.246 15.708 Atomic orbital electron populations 1.22969 0.79577 1.03765 1.00910 1.87880 1.21399 1.27740 1.95034 1.23081 0.93792 0.84684 0.95477 0.89379 1.22783 0.98559 0.98434 0.97568 1.22479 0.97541 0.99707 0.97202 1.21507 0.79880 0.98060 0.96782 0.90525 1.45952 1.07851 1.10011 1.73287 1.18382 0.85922 0.84382 0.74660 1.90604 1.81910 1.22003 1.54288 1.19209 0.92577 0.94509 1.23546 1.20722 0.95875 0.94315 0.96320 1.21010 0.92414 0.99390 1.08958 1.18137 0.94065 0.91724 0.86249 1.20110 0.95843 0.99073 1.35080 0.89678 1.26933 1.03017 0.95354 0.92834 1.69765 1.39536 1.09790 1.23067 0.85106 0.76243 0.78444 0.79518 1.18581 1.18565 1.18107 1.20867 0.95679 0.96643 1.14162 1.20512 0.92715 0.97449 0.94508 1.22592 0.94838 0.97270 1.01072 0.92961 0.93186 0.88674 0.89860 0.91113 0.90932 0.92470 0.75695 0.85988 0.86888 0.89180 0.87788 0.87904 0.89915 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.89 113.37 1.23 1.53 16 2 O -0.40 -7.87 10.49 -148.98 -1.56 -9.43 16 3 C 0.09 1.60 3.35 31.89 0.11 1.71 16 4 H 0.09 1.32 7.89 -2.38 -0.02 1.30 16 5 C -0.14 -2.56 6.55 31.67 0.21 -2.35 16 6 C -0.13 -3.17 6.59 31.32 0.21 -2.96 16 7 C 0.14 3.81 3.23 45.71 0.15 3.96 16 8 H 0.08 2.28 7.61 -2.39 -0.02 2.26 16 9 N -0.72 -23.30 4.94 -442.16 -2.18 -25.48 16 10 C 0.57 24.13 7.75 86.73 0.67 24.81 16 11 O -0.60 -28.60 16.00 -3.98 -0.06 -28.66 16 12 C -0.29 -13.52 5.89 -19.93 -0.12 -13.64 16 13 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 14 C -0.20 -9.88 8.63 22.47 0.19 -9.68 16 15 C 0.10 5.31 5.57 -21.28 -0.12 5.19 16 16 C -0.47 -24.08 9.04 23.46 0.21 -23.86 16 17 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 18 C 0.04 1.75 5.13 85.35 0.44 2.19 16 19 N -0.80 -38.30 10.97 21.87 0.24 -38.06 16 20 Si 0.99 34.89 29.60 68.60 2.03 36.92 16 21 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 22 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 24 C -0.25 -12.73 9.73 22.47 0.22 -12.52 16 25 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 26 C -0.12 -2.52 6.25 31.67 0.20 -2.32 16 27 H 0.05 0.54 8.11 -2.38 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.06 1.60 7.92 -2.39 -0.02 1.59 16 34 H 0.41 11.71 6.34 -92.71 -0.59 11.13 16 35 H 0.12 4.43 6.37 -2.91 -0.02 4.41 16 36 H 0.11 5.70 6.17 -2.91 -0.02 5.68 16 37 H 0.30 12.63 8.29 -92.71 -0.77 11.86 16 38 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 40 H 0.08 1.79 7.73 -2.39 -0.02 1.77 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -61.80 339.79 2.93 -58.87 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.45 Total: 37.30 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 4.02 Total: -31.46 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -1.94 Total: -63.54 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.63 Total: -38.09 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Total: -61.80 2.93 -58.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330980700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.199 kcal (2) G-P(sol) polarization free energy of solvation -61.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds