Wall clock time and date at job start Tue Mar 31 2020 05:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00225 * 2 1 4 4 H 1.08999 * 110.81324 * 26.65833 * 3 2 1 5 5 C 1.54890 * 110.75125 * 263.32783 * 3 2 1 6 6 C 1.54267 * 104.18923 * 203.74237 * 5 3 2 7 7 C 1.53864 * 106.60353 * 23.61121 * 6 5 3 8 8 H 1.09004 * 110.03972 * 119.28404 * 7 6 5 9 9 N 1.46508 * 110.03274 * 240.71784 * 7 6 5 10 10 C 1.34783 * 119.99715 * 272.16231 * 9 7 6 11 11 O 1.21593 * 119.99804 * 359.97438 * 10 9 7 12 12 C 1.47637 * 119.99684 * 179.97438 * 10 9 7 13 13 C 1.40011 * 119.89959 * 359.73130 * 12 10 9 14 14 C 1.36314 * 120.10777 * 179.75715 * 13 12 10 15 15 C 1.40895 * 119.89245 * 0.51515 * 14 13 12 16 16 C 1.41101 * 120.10586 * 179.71561 * 15 14 13 17 17 H 1.07996 * 120.00412 * 204.65343 * 16 15 14 18 18 C 1.40234 * 119.99906 * 24.64717 * 16 15 14 19 19 N 1.30652 * 119.99744 * 17.86894 * 18 16 15 20 20 Si 1.86795 * 120.00130 * 197.86526 * 18 16 15 21 21 H 1.48501 * 109.47267 * 90.00448 * 20 18 16 22 22 H 1.48503 * 109.46991 * 210.00280 * 20 18 16 23 23 H 1.48500 * 109.47173 * 329.99964 * 20 18 16 24 24 C 1.40888 * 119.79064 * 359.73482 * 15 14 13 25 25 C 1.36321 * 119.89489 * 0.02562 * 24 15 14 26 26 C 1.54266 * 106.59934 * 359.97438 * 7 6 5 27 27 H 1.08996 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47206 * 300.00454 * 1 2 3 29 29 H 1.09008 * 109.47036 * 59.99957 * 1 2 3 30 30 H 1.08999 * 110.48729 * 85.06814 * 5 3 2 31 31 H 1.09001 * 110.59796 * 322.47288 * 5 3 2 32 32 H 1.09001 * 110.03168 * 264.32197 * 6 5 3 33 33 H 1.09008 * 110.03323 * 142.89715 * 6 5 3 34 34 H 0.96999 * 119.99931 * 92.16585 * 9 7 6 35 35 H 1.08003 * 119.94221 * 0.02562 * 13 12 10 36 36 H 1.08003 * 120.05489 * 180.22650 * 14 13 12 37 37 H 0.97001 * 119.99487 * 179.97438 * 19 18 16 38 38 H 1.07994 * 120.05171 * 179.97438 * 24 15 14 39 39 H 1.07997 * 119.95009 * 179.97438 * 25 24 15 40 40 H 1.08999 * 110.48549 * 95.06971 * 26 7 6 41 41 H 1.09002 * 110.49177 * 217.71252 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3360 2.0297 0.4571 5 6 2.3872 1.7384 -1.4386 6 6 3.4949 2.7932 -1.2381 7 6 4.1257 2.5124 0.1369 8 1 5.1846 2.2805 0.0218 9 7 3.9584 3.6750 1.0127 10 6 4.8762 4.6620 1.0052 11 8 5.8433 4.5873 0.2719 12 6 4.7072 5.8337 1.8873 13 6 3.5899 5.9201 2.7266 14 6 3.4322 6.9977 3.5464 15 6 4.3903 8.0308 3.5403 16 6 4.2284 9.1512 4.3826 17 1 4.6921 10.0919 4.1252 18 6 3.4652 9.0431 5.5542 19 7 3.1984 7.8657 6.0537 20 14 2.8303 10.5825 6.4005 21 1 1.4925 10.9300 5.8575 22 1 2.7228 10.3359 7.8610 23 1 3.7707 11.7055 6.1561 24 6 5.5102 7.9419 2.6901 25 6 5.6619 6.8580 1.8774 26 6 3.3790 1.2971 0.7245 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.5270 2.1795 -1.9420 31 1 2.7671 0.8896 -2.0073 32 1 3.0643 3.7944 -1.2539 33 1 4.2477 2.6977 -2.0207 34 1 3.1871 3.7343 1.5979 35 1 2.8540 5.1296 2.7277 36 1 2.5719 7.0618 4.1962 37 1 2.6708 7.7911 6.8642 38 1 6.2469 8.7315 2.6817 39 1 6.5198 6.7891 1.2250 40 1 3.9194 0.3758 0.5071 41 1 3.2428 1.4161 1.7994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330980701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:47 Heat of formation + Delta-G solvation = -80.275799 kcal Electronic energy + Delta-G solvation = -22267.451425 eV Core-core repulsion = 18918.125923 eV Total energy + Delta-G solvation = -3349.325502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.73475 -38.52374 -37.19436 -36.08301 -33.88263 -32.81176 -30.20309 -29.45606 -28.84880 -27.64208 -26.20162 -25.50952 -22.19401 -21.04050 -20.84941 -20.15896 -19.63741 -17.54081 -17.16407 -16.65873 -16.03205 -15.72380 -15.35703 -15.04895 -14.20485 -14.05518 -14.01352 -13.57284 -13.37936 -13.26671 -12.80697 -12.71688 -12.13689 -12.04362 -11.79582 -11.74044 -11.53689 -11.39159 -11.31618 -11.22964 -10.98522 -10.79146 -10.69862 -10.65041 -10.04727 -9.69517 -9.57264 -9.37235 -8.95685 -8.60271 -7.73764 -7.55771 -7.05237 -4.61925 2.21965 2.90525 2.94432 2.96910 3.02168 3.55558 3.72566 3.78934 3.85995 4.44731 4.49404 4.59725 4.89639 5.10620 5.13249 5.24044 5.35141 5.41405 5.47302 5.53468 5.55680 5.61661 5.71964 5.90684 5.95746 5.99898 6.03152 6.22541 6.30790 6.31695 6.75515 6.81318 6.95805 7.03705 7.08221 7.12252 7.42127 7.64234 7.77775 7.84578 8.05697 8.24283 8.38388 8.61626 8.73843 9.08298 9.86770 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.003339 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.006542 B = 8383.735801 C = 9384.295240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.079 3.921 4 H 0.071 0.929 5 C -0.142 4.142 6 C -0.133 4.133 7 C 0.146 3.854 8 H 0.092 0.908 9 N -0.737 5.737 10 C 0.572 3.428 11 O -0.575 6.575 12 C -0.285 4.285 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.914 3.086 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.239 4.239 25 C -0.022 4.022 26 C -0.128 4.128 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.396 0.604 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 -9.830 -6.259 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.022 3.978 4 H 0.089 0.911 5 C -0.180 4.180 6 C -0.172 4.172 7 C 0.040 3.960 8 H 0.110 0.890 9 N -0.390 5.390 10 C 0.367 3.633 11 O -0.457 6.457 12 C -0.289 4.289 13 C -0.082 4.082 14 C -0.198 4.198 15 C 0.125 3.875 16 C -0.471 4.471 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.738 3.262 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.259 4.259 25 C -0.041 4.041 26 C -0.166 4.166 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.231 0.769 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.280 -10.179 -6.564 13.643 hybrid contribution -0.985 0.833 0.782 1.509 sum -7.266 -9.345 -5.782 13.174 Atomic orbital electron populations 1.22778 0.81254 1.02556 1.00019 1.87891 1.19515 1.27744 1.94947 1.23230 0.94644 0.84285 0.95675 0.91097 1.22810 0.98861 0.99271 0.97074 1.22555 0.97726 0.99263 0.97614 1.21314 1.00581 0.84846 0.89212 0.89004 1.46078 1.27425 1.21086 1.44361 1.18598 0.80957 0.82189 0.81536 1.90631 1.31527 1.79931 1.43568 1.18912 1.02702 0.98566 1.08744 1.20464 0.95270 0.97076 0.95398 1.20974 1.00973 0.95990 1.01823 1.17785 0.88865 0.91730 0.89085 1.19861 1.25601 0.97834 1.03765 0.89698 1.26104 0.93763 0.97693 0.97140 1.69749 1.26965 1.25141 1.17625 0.86202 0.80225 0.81571 0.78238 1.18940 1.20013 1.18277 1.20724 1.00033 0.99987 1.05133 1.20367 0.95977 0.92367 0.95384 1.22713 0.94818 0.98731 1.00307 0.89803 0.93958 0.94132 0.91706 0.90626 0.90878 0.90977 0.76905 0.89412 0.86228 0.90240 0.88391 0.88112 0.89399 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.29 10.49 -35.23 -0.37 -4.66 16 3 C 0.08 0.86 3.39 -24.75 -0.08 0.78 16 4 H 0.07 0.73 7.83 -51.93 -0.41 0.33 16 5 C -0.14 -1.51 6.55 -25.07 -0.16 -1.67 16 6 C -0.13 -1.69 6.59 -25.62 -0.17 -1.86 16 7 C 0.15 2.04 3.25 -66.81 -0.22 1.82 16 8 H 0.09 1.43 7.57 -51.93 -0.39 1.03 16 9 N -0.74 -12.04 4.88 -53.72 -0.26 -12.30 16 10 C 0.57 12.00 7.76 -12.42 -0.10 11.90 16 11 O -0.57 -13.51 15.98 5.28 0.08 -13.43 16 12 C -0.28 -6.45 5.89 -104.73 -0.62 -7.07 16 13 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 14 C -0.18 -4.32 8.63 -39.27 -0.34 -4.66 16 15 C 0.13 3.25 5.58 -106.80 -0.60 2.66 16 16 C -0.44 -10.95 9.04 -37.75 -0.34 -11.29 16 17 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 18 C 0.07 1.72 5.14 -17.30 -0.09 1.63 16 19 N -0.77 -18.33 10.95 55.56 0.61 -17.72 16 20 Si 0.91 17.14 29.60 -169.99 -5.03 12.11 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 22 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 24 C -0.24 -5.78 9.73 -39.27 -0.38 -6.16 16 25 C -0.02 -0.51 9.52 -39.60 -0.38 -0.89 16 26 C -0.13 -1.47 6.16 -25.09 -0.15 -1.63 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 29 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 33 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.40 5.81 6.58 -40.82 -0.27 5.55 16 35 H 0.09 1.62 6.37 -52.48 -0.33 1.28 16 36 H 0.12 2.93 6.16 -52.48 -0.32 2.61 16 37 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.90 7.99 -51.93 -0.41 0.48 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -28.21 340.04 -8.63 -36.85 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.88 Total: 10.88 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.91 Total: -16.84 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.35 Total: -30.03 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.29 Total: -18.09 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.21 -8.63 -36.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330980701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.429 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds