Wall clock time and date at job start Tue Mar 31 2020 05:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00225 * 2 1 4 4 H 1.08999 * 110.81324 * 26.65833 * 3 2 1 5 5 C 1.54890 * 110.75125 * 263.32783 * 3 2 1 6 6 C 1.54267 * 104.18923 * 203.74237 * 5 3 2 7 7 C 1.53864 * 106.60353 * 23.61121 * 6 5 3 8 8 H 1.09004 * 110.03972 * 119.28404 * 7 6 5 9 9 N 1.46508 * 110.03274 * 240.71784 * 7 6 5 10 10 C 1.34783 * 119.99715 * 272.16231 * 9 7 6 11 11 O 1.21593 * 119.99804 * 359.97438 * 10 9 7 12 12 C 1.47637 * 119.99684 * 179.97438 * 10 9 7 13 13 C 1.40011 * 119.89959 * 359.73130 * 12 10 9 14 14 C 1.36314 * 120.10777 * 179.75715 * 13 12 10 15 15 C 1.40895 * 119.89245 * 0.51515 * 14 13 12 16 16 C 1.41101 * 120.10586 * 179.71561 * 15 14 13 17 17 H 1.07996 * 120.00412 * 204.65343 * 16 15 14 18 18 C 1.40234 * 119.99906 * 24.64717 * 16 15 14 19 19 N 1.30652 * 119.99744 * 17.86894 * 18 16 15 20 20 Si 1.86795 * 120.00130 * 197.86526 * 18 16 15 21 21 H 1.48501 * 109.47267 * 90.00448 * 20 18 16 22 22 H 1.48503 * 109.46991 * 210.00280 * 20 18 16 23 23 H 1.48500 * 109.47173 * 329.99964 * 20 18 16 24 24 C 1.40888 * 119.79064 * 359.73482 * 15 14 13 25 25 C 1.36321 * 119.89489 * 0.02562 * 24 15 14 26 26 C 1.54266 * 106.59934 * 359.97438 * 7 6 5 27 27 H 1.08996 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47206 * 300.00454 * 1 2 3 29 29 H 1.09008 * 109.47036 * 59.99957 * 1 2 3 30 30 H 1.08999 * 110.48729 * 85.06814 * 5 3 2 31 31 H 1.09001 * 110.59796 * 322.47288 * 5 3 2 32 32 H 1.09001 * 110.03168 * 264.32197 * 6 5 3 33 33 H 1.09008 * 110.03323 * 142.89715 * 6 5 3 34 34 H 0.96999 * 119.99931 * 92.16585 * 9 7 6 35 35 H 1.08003 * 119.94221 * 0.02562 * 13 12 10 36 36 H 1.08003 * 120.05489 * 180.22650 * 14 13 12 37 37 H 0.97001 * 119.99487 * 179.97438 * 19 18 16 38 38 H 1.07994 * 120.05171 * 179.97438 * 24 15 14 39 39 H 1.07997 * 119.95009 * 179.97438 * 25 24 15 40 40 H 1.08999 * 110.48549 * 95.06971 * 26 7 6 41 41 H 1.09002 * 110.49177 * 217.71252 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3360 2.0297 0.4571 5 6 2.3872 1.7384 -1.4386 6 6 3.4949 2.7932 -1.2381 7 6 4.1257 2.5124 0.1369 8 1 5.1846 2.2805 0.0218 9 7 3.9584 3.6750 1.0127 10 6 4.8762 4.6620 1.0052 11 8 5.8433 4.5873 0.2719 12 6 4.7072 5.8337 1.8873 13 6 3.5899 5.9201 2.7266 14 6 3.4322 6.9977 3.5464 15 6 4.3903 8.0308 3.5403 16 6 4.2284 9.1512 4.3826 17 1 4.6921 10.0919 4.1252 18 6 3.4652 9.0431 5.5542 19 7 3.1984 7.8657 6.0537 20 14 2.8303 10.5825 6.4005 21 1 1.4925 10.9300 5.8575 22 1 2.7228 10.3359 7.8610 23 1 3.7707 11.7055 6.1561 24 6 5.5102 7.9419 2.6901 25 6 5.6619 6.8580 1.8774 26 6 3.3790 1.2971 0.7245 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.5270 2.1795 -1.9420 31 1 2.7671 0.8896 -2.0073 32 1 3.0643 3.7944 -1.2539 33 1 4.2477 2.6977 -2.0207 34 1 3.1871 3.7343 1.5979 35 1 2.8540 5.1296 2.7277 36 1 2.5719 7.0618 4.1962 37 1 2.6708 7.7911 6.8642 38 1 6.2469 8.7315 2.6817 39 1 6.5198 6.7891 1.2250 40 1 3.9194 0.3758 0.5071 41 1 3.2428 1.4161 1.7994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330980701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:47 Heat of formation + Delta-G solvation = -96.088524 kcal Electronic energy + Delta-G solvation = -22268.137116 eV Core-core repulsion = 18918.125923 eV Total energy + Delta-G solvation = -3350.011193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.09352 -39.78142 -38.81296 -37.23228 -35.66568 -34.19918 -31.93329 -31.29120 -29.77715 -28.79393 -27.43497 -26.70138 -23.86849 -22.81946 -21.73978 -21.55392 -21.09213 -19.36121 -18.50486 -17.82217 -17.25478 -17.05688 -16.70116 -15.81123 -15.74926 -15.71006 -15.45749 -15.08589 -14.64727 -14.41852 -14.33406 -13.87765 -13.75241 -13.69837 -13.20354 -12.99936 -12.85277 -12.60935 -12.58886 -12.36819 -12.25922 -12.24708 -11.87285 -11.74387 -11.54514 -11.36057 -11.12424 -10.67781 -10.49365 -10.03559 -9.57196 -9.40296 -8.79369 -6.48297 0.44820 1.15218 1.39243 1.43707 1.53506 2.13180 2.17894 2.38899 2.76084 2.82000 3.51239 3.58238 3.70374 4.04073 4.24870 4.27271 4.29000 4.35825 4.44516 4.47082 4.51079 4.59620 4.62896 4.64609 4.83354 4.91007 4.92645 5.01199 5.03440 5.07557 5.16215 5.18276 5.23757 5.30557 5.58351 5.68257 5.83144 5.95157 5.99666 6.23118 6.28966 6.54180 6.72573 6.77452 6.89349 7.46600 8.15833 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.003339 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.006542 B = 8383.735801 C = 9384.295240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.082 3.918 4 H 0.079 0.921 5 C -0.133 4.133 6 C -0.129 4.129 7 C 0.142 3.858 8 H 0.074 0.926 9 N -0.718 5.718 10 C 0.573 3.427 11 O -0.604 6.604 12 C -0.294 4.294 13 C -0.053 4.053 14 C -0.198 4.198 15 C 0.102 3.898 16 C -0.474 4.474 17 H 0.084 0.916 18 C 0.039 3.961 19 N -0.797 5.797 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.259 1.259 24 C -0.254 4.254 25 C -0.033 4.033 26 C -0.120 4.120 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.406 0.594 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.297 0.703 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 -10.637 -5.992 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.024 3.976 4 H 0.097 0.903 5 C -0.171 4.171 6 C -0.168 4.168 7 C 0.037 3.963 8 H 0.093 0.907 9 N -0.370 5.370 10 C 0.367 3.633 11 O -0.489 6.489 12 C -0.298 4.298 13 C -0.072 4.072 14 C -0.217 4.217 15 C 0.099 3.901 16 C -0.502 4.502 17 H 0.102 0.898 18 C -0.181 4.181 19 N -0.421 5.421 20 Si 0.808 3.192 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.182 1.182 24 C -0.274 4.274 25 C -0.052 4.052 26 C -0.158 4.158 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.157 -11.028 -6.302 15.096 hybrid contribution -0.400 0.974 0.653 1.239 sum -8.557 -10.054 -5.649 14.360 Atomic orbital electron populations 1.22975 0.79731 1.03807 1.00742 1.87864 1.21208 1.27655 1.95023 1.23177 0.94288 0.84629 0.95476 0.90329 1.22745 0.98374 0.98624 0.97328 1.22479 0.98337 0.99383 0.96630 1.21478 1.00269 0.84744 0.89784 0.90740 1.45927 1.26421 1.20519 1.44153 1.18391 0.81334 0.82618 0.81004 1.90614 1.32955 1.80621 1.44696 1.19202 1.02586 0.99027 1.08988 1.20724 0.95468 0.97152 0.93859 1.21014 1.00923 0.96896 1.02864 1.18133 0.89527 0.92671 0.89811 1.20117 1.27292 0.97815 1.04927 0.89765 1.26917 0.93166 1.00867 0.97119 1.69764 1.27021 1.27014 1.18285 0.85104 0.79488 0.77268 0.77372 1.18280 1.18920 1.18229 1.20860 1.00303 1.00590 1.05640 1.20512 0.96508 0.92743 0.95454 1.22640 0.95194 0.97508 1.00490 0.88417 0.93357 0.93274 0.90437 0.90168 0.92103 0.91181 0.75689 0.85817 0.86797 0.89171 0.87901 0.88015 0.88723 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.40 -7.88 10.49 -148.98 -1.56 -9.45 16 3 C 0.08 1.57 3.39 31.88 0.11 1.68 16 4 H 0.08 1.39 7.83 -2.39 -0.02 1.37 16 5 C -0.13 -2.50 6.55 31.67 0.21 -2.30 16 6 C -0.13 -3.12 6.59 31.32 0.21 -2.91 16 7 C 0.14 3.78 3.25 45.71 0.15 3.93 16 8 H 0.07 2.28 7.57 -2.38 -0.02 2.26 16 9 N -0.72 -22.54 4.88 -442.14 -2.16 -24.69 16 10 C 0.57 23.80 7.76 86.72 0.67 24.47 16 11 O -0.60 -28.60 15.98 -4.01 -0.06 -28.66 16 12 C -0.29 -13.29 5.89 -19.93 -0.12 -13.41 16 13 C -0.05 -2.29 9.47 22.25 0.21 -2.08 16 14 C -0.20 -9.66 8.63 22.47 0.19 -9.46 16 15 C 0.10 5.27 5.58 -21.28 -0.12 5.15 16 16 C -0.47 -23.87 9.04 23.46 0.21 -23.66 16 17 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 18 C 0.04 1.77 5.14 85.35 0.44 2.21 16 19 N -0.80 -37.72 10.95 21.87 0.24 -37.49 16 20 Si 0.99 34.49 29.60 68.60 2.03 36.52 16 21 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 22 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 24 C -0.25 -12.65 9.73 22.47 0.22 -12.44 16 25 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 26 C -0.12 -2.52 6.16 31.66 0.19 -2.33 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 0.60 8.12 -2.38 -0.02 0.58 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.63 7.92 -2.39 -0.02 1.61 16 33 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.41 11.03 6.58 -92.71 -0.61 10.42 16 35 H 0.12 4.30 6.37 -2.91 -0.02 4.28 16 36 H 0.11 5.63 6.16 -2.91 -0.02 5.61 16 37 H 0.30 12.45 8.29 -92.71 -0.77 11.68 16 38 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.69 7.99 -2.39 -0.02 1.67 16 Total: -1.00 -60.95 340.04 2.93 -58.02 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.43 Total: 36.71 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 4.02 Total: -30.96 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -1.92 Total: -62.18 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.63 Total: -38.11 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -60.95 2.93 -58.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330980701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.070 kcal (2) G-P(sol) polarization free energy of solvation -60.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds