Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57996 * 2 1 4 4 O 1.42100 * 108.57483 * 228.97692 * 2 1 3 5 5 C 1.81399 * 101.92209 * 114.49179 * 2 1 3 6 6 C 1.52995 * 109.47038 * 179.97438 * 5 2 1 7 7 C 1.52997 * 109.47173 * 294.99784 * 6 5 2 8 8 C 1.53003 * 109.47358 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46705 * 60.00173 * 8 7 6 10 10 N 1.46902 * 109.46822 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99790 * 274.99716 * 10 9 8 12 12 C 1.53009 * 109.47033 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47205 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99882 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99833 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00174 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99746 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47105 * 89.99913 * 17 15 13 19 19 H 1.48497 * 109.46900 * 209.99419 * 17 15 13 20 20 H 1.48497 * 109.47195 * 329.99814 * 17 15 13 21 21 C 1.52997 * 109.47071 * 300.00003 * 9 8 7 22 22 C 1.52995 * 109.47173 * 60.00357 * 21 9 8 23 23 H 1.08998 * 109.46716 * 305.51407 * 1 2 3 24 24 H 1.09006 * 109.46801 * 65.50576 * 1 2 3 25 25 H 1.08993 * 109.47055 * 185.50649 * 1 2 3 26 26 H 1.08999 * 109.46744 * 299.99771 * 5 2 1 27 27 H 1.08998 * 109.46870 * 59.99867 * 5 2 1 28 28 H 1.08997 * 109.47236 * 54.99926 * 6 5 2 29 29 H 1.09005 * 109.47325 * 300.00354 * 7 6 5 30 30 H 1.09003 * 109.47024 * 60.00338 * 7 6 5 31 31 H 1.08997 * 109.47176 * 300.00219 * 8 7 6 32 32 H 1.09001 * 109.47436 * 179.97438 * 8 7 6 33 33 H 1.09005 * 109.47049 * 60.00175 * 9 8 7 34 34 H 1.00908 * 110.99751 * 151.04778 * 10 9 8 35 35 H 1.08996 * 109.47314 * 300.00156 * 11 10 9 36 36 H 1.09002 * 109.47509 * 60.00505 * 11 10 9 37 37 H 1.08996 * 109.47046 * 300.00133 * 12 11 10 38 38 H 1.09002 * 109.46713 * 59.99831 * 12 11 10 39 39 H 0.96995 * 119.99871 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47156 * 300.00166 * 21 9 8 41 41 H 1.09003 * 109.47024 * 180.02562 * 21 9 8 42 42 H 1.08998 * 109.47350 * 179.97438 * 22 21 9 43 43 H 1.08997 * 109.47236 * 59.99858 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7978 7 6 4.2906 -1.7870 0.7669 8 6 5.8074 -1.8704 0.9490 9 6 6.1248 -2.3741 2.3585 10 7 7.5811 -2.4536 2.5337 11 6 8.1032 -3.7303 2.0282 12 6 9.6194 -3.7762 2.2280 13 6 10.1551 -5.0857 1.7089 14 1 9.4814 -5.8125 1.2798 15 6 11.5051 -5.3561 1.7828 16 7 12.3253 -4.4711 2.3058 17 14 12.1689 -6.9795 1.1399 18 1 12.5292 -6.8342 -0.2934 19 1 13.3747 -7.3636 1.9168 20 1 11.1306 -8.0312 1.2851 21 6 5.5397 -1.4068 3.3895 22 6 4.0229 -1.3233 3.2073 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4261 -0.9352 25 1 -0.3633 -1.0229 0.0986 26 1 1.7611 -0.1172 2.4042 27 1 1.7611 -1.7370 1.6663 28 1 4.1435 0.1686 1.6583 29 1 3.8525 -2.7754 0.9063 30 1 4.0649 -1.4280 -0.2373 31 1 6.2451 -0.8820 0.8092 32 1 6.2242 -2.5599 0.2149 33 1 5.6871 -3.3625 2.4983 34 1 7.8372 -2.3154 3.4999 35 1 7.6402 -4.5532 2.5726 36 1 7.8734 -3.8221 0.9666 37 1 10.0827 -2.9533 1.6839 38 1 9.8489 -3.6847 3.2897 39 1 13.2750 -4.6615 2.3581 40 1 5.9773 -0.4184 3.2497 41 1 5.7662 -1.7653 4.3936 42 1 3.6060 -0.6346 3.9420 43 1 3.5853 -2.3117 3.3471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340362482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -98.145801 kcal Electronic energy + Delta-G solvation = -21249.651453 eV Core-core repulsion = 18034.995001 eV Total energy + Delta-G solvation = -3214.656452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.14330 -37.28580 -36.34977 -35.60512 -33.17609 -31.56036 -30.81594 -30.06920 -28.74327 -25.91044 -23.76027 -22.82047 -21.09836 -20.38540 -19.73168 -19.15217 -17.05667 -16.46190 -16.41735 -16.28298 -15.36253 -15.03375 -14.56689 -14.42447 -14.17899 -13.88174 -13.72300 -13.66902 -13.34938 -12.81262 -12.69776 -12.53336 -12.28648 -12.27424 -11.98492 -11.90046 -11.40276 -11.25943 -11.22518 -11.06281 -11.02007 -10.89189 -10.71097 -10.54358 -10.27674 -9.88922 -9.86009 -9.29605 -9.09774 -8.32204 -7.75587 -5.96734 -3.99117 -0.38401 2.39120 3.27633 3.34439 3.40270 3.43468 3.61857 4.12794 4.23713 4.33571 4.46340 4.52969 4.60487 4.71882 4.85180 5.08198 5.17139 5.24318 5.25815 5.35389 5.39166 5.46258 5.52265 5.55470 5.80414 5.88320 5.98784 6.08267 6.19228 6.27267 6.37145 6.43183 6.46795 6.61741 7.04466 7.56018 7.77527 7.87923 8.02511 8.13405 8.47585 9.08324 9.64488 11.14750 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034763 B = 0.002672 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.261313 B =10475.455093 C =10866.825755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.416 3.584 3 O -0.939 6.939 4 O -0.932 6.932 5 C -0.604 4.604 6 C -0.075 4.075 7 C -0.145 4.145 8 C -0.106 4.106 9 C 0.085 3.915 10 N -0.689 5.689 11 C 0.067 3.933 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.123 4.123 22 C -0.101 4.101 23 H 0.126 0.874 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.336 0.664 35 H 0.013 0.987 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.052 9.469 0.595 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.598 3.402 3 O -0.936 6.936 4 O -0.929 6.929 5 C -0.733 4.733 6 C -0.095 4.095 7 C -0.183 4.183 8 C -0.144 4.144 9 C -0.025 4.025 10 N -0.320 5.320 11 C -0.062 4.062 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.161 4.161 22 C -0.140 4.140 23 H 0.145 0.855 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.153 0.847 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.169 10.137 -0.618 28.070 hybrid contribution -0.559 -1.845 1.044 2.192 sum -26.727 8.292 0.426 27.987 Atomic orbital electron populations 1.30315 1.27511 1.11450 1.11660 1.08023 0.77956 0.76001 0.78192 1.93609 1.78832 1.34567 1.86636 1.93606 1.78191 1.66732 1.54346 1.30382 1.06568 1.13800 1.22569 1.20960 0.89003 1.01479 0.98039 1.22115 0.97253 0.99674 0.99248 1.21489 0.93466 1.02529 0.96896 1.21520 0.89149 0.96880 0.94950 1.60597 1.09363 1.37008 1.25018 1.22190 0.98874 0.86500 0.98595 1.19068 0.87989 0.97123 0.97050 1.21186 0.92608 1.02190 1.39988 0.92801 1.25006 0.97114 0.96875 0.95410 1.69973 1.03516 1.34691 1.45114 0.86589 0.78445 0.83992 0.78925 1.20612 1.21248 1.19957 1.21741 0.94604 1.00969 0.98755 1.21486 0.96509 1.01298 0.94680 0.85513 0.85347 0.85384 0.85055 0.84915 0.89381 0.91280 0.89426 0.91156 0.91307 0.94441 0.84655 0.96849 0.92335 0.95656 0.96903 0.93016 0.90862 0.91864 0.91707 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.07 10.62 101.05 1.07 -1.00 16 2 S 2.42 16.86 5.15 -107.50 -0.55 16.30 16 3 O -0.94 -10.35 18.10 -57.83 -1.05 -11.40 16 4 O -0.93 -10.08 15.46 -57.83 -0.89 -10.98 16 5 C -0.60 -3.25 5.26 37.15 0.20 -3.06 16 6 C -0.08 -0.69 2.19 -90.62 -0.20 -0.89 16 7 C -0.14 -1.66 4.84 -26.73 -0.13 -1.79 16 8 C -0.11 -1.50 5.43 -26.73 -0.15 -1.65 16 9 C 0.09 1.24 2.49 -67.71 -0.17 1.07 16 10 N -0.69 -12.47 6.31 -106.72 -0.67 -13.14 16 11 C 0.07 1.44 5.42 -3.82 -0.02 1.42 16 12 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 13 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 21 C -0.12 -1.41 5.19 -26.74 -0.14 -1.55 16 22 C -0.10 -0.90 5.20 -26.73 -0.14 -1.04 16 23 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 24 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.05 5.40 -51.93 -0.28 0.77 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.08 7.45 -51.93 -0.39 0.69 16 33 H 0.04 0.56 7.80 -51.93 -0.41 0.16 16 34 H 0.34 5.82 8.34 -39.29 -0.33 5.49 16 35 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 36 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -36.46 350.12 -10.07 -46.52 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.66 Total: -1.19 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -0.23 Total: -21.77 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.06 Total: -39.75 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.94 Total: -22.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 16.86 SS G_CDS: -0.55 Total: 16.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.46 -10.07 -46.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340362482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.622 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds