Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57996 * 2 1 4 4 O 1.42100 * 108.57483 * 228.97692 * 2 1 3 5 5 C 1.81399 * 101.92209 * 114.49179 * 2 1 3 6 6 C 1.52995 * 109.47038 * 179.97438 * 5 2 1 7 7 C 1.52997 * 109.47173 * 294.99784 * 6 5 2 8 8 C 1.53003 * 109.47358 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46705 * 60.00173 * 8 7 6 10 10 N 1.46902 * 109.46822 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99790 * 274.99716 * 10 9 8 12 12 C 1.53009 * 109.47033 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47205 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99882 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99833 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00174 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99746 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47105 * 89.99913 * 17 15 13 19 19 H 1.48497 * 109.46900 * 209.99419 * 17 15 13 20 20 H 1.48497 * 109.47195 * 329.99814 * 17 15 13 21 21 C 1.52997 * 109.47071 * 300.00003 * 9 8 7 22 22 C 1.52995 * 109.47173 * 60.00357 * 21 9 8 23 23 H 1.08998 * 109.46716 * 305.51407 * 1 2 3 24 24 H 1.09006 * 109.46801 * 65.50576 * 1 2 3 25 25 H 1.08993 * 109.47055 * 185.50649 * 1 2 3 26 26 H 1.08999 * 109.46744 * 299.99771 * 5 2 1 27 27 H 1.08998 * 109.46870 * 59.99867 * 5 2 1 28 28 H 1.08997 * 109.47236 * 54.99926 * 6 5 2 29 29 H 1.09005 * 109.47325 * 300.00354 * 7 6 5 30 30 H 1.09003 * 109.47024 * 60.00338 * 7 6 5 31 31 H 1.08997 * 109.47176 * 300.00219 * 8 7 6 32 32 H 1.09001 * 109.47436 * 179.97438 * 8 7 6 33 33 H 1.09005 * 109.47049 * 60.00175 * 9 8 7 34 34 H 1.00908 * 110.99751 * 151.04778 * 10 9 8 35 35 H 1.08996 * 109.47314 * 300.00156 * 11 10 9 36 36 H 1.09002 * 109.47509 * 60.00505 * 11 10 9 37 37 H 1.08996 * 109.47046 * 300.00133 * 12 11 10 38 38 H 1.09002 * 109.46713 * 59.99831 * 12 11 10 39 39 H 0.96995 * 119.99871 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47156 * 300.00166 * 21 9 8 41 41 H 1.09003 * 109.47024 * 180.02562 * 21 9 8 42 42 H 1.08998 * 109.47350 * 179.97438 * 22 21 9 43 43 H 1.08997 * 109.47236 * 59.99858 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7978 7 6 4.2906 -1.7870 0.7669 8 6 5.8074 -1.8704 0.9490 9 6 6.1248 -2.3741 2.3585 10 7 7.5811 -2.4536 2.5337 11 6 8.1032 -3.7303 2.0282 12 6 9.6194 -3.7762 2.2280 13 6 10.1551 -5.0857 1.7089 14 1 9.4814 -5.8125 1.2798 15 6 11.5051 -5.3561 1.7828 16 7 12.3253 -4.4711 2.3058 17 14 12.1689 -6.9795 1.1399 18 1 12.5292 -6.8342 -0.2934 19 1 13.3747 -7.3636 1.9168 20 1 11.1306 -8.0312 1.2851 21 6 5.5397 -1.4068 3.3895 22 6 4.0229 -1.3233 3.2073 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4261 -0.9352 25 1 -0.3633 -1.0229 0.0986 26 1 1.7611 -0.1172 2.4042 27 1 1.7611 -1.7370 1.6663 28 1 4.1435 0.1686 1.6583 29 1 3.8525 -2.7754 0.9063 30 1 4.0649 -1.4280 -0.2373 31 1 6.2451 -0.8820 0.8092 32 1 6.2242 -2.5599 0.2149 33 1 5.6871 -3.3625 2.4983 34 1 7.8372 -2.3154 3.4999 35 1 7.6402 -4.5532 2.5726 36 1 7.8734 -3.8221 0.9666 37 1 10.0827 -2.9533 1.6839 38 1 9.8489 -3.6847 3.2897 39 1 13.2750 -4.6615 2.3581 40 1 5.9773 -0.4184 3.2497 41 1 5.7662 -1.7653 4.3936 42 1 3.6060 -0.6346 3.9420 43 1 3.5853 -2.3117 3.3471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340362482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -125.828578 kcal Electronic energy + Delta-G solvation = -21250.851868 eV Core-core repulsion = 18034.995001 eV Total energy + Delta-G solvation = -3215.856867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.12681 -37.93227 -37.16584 -36.83803 -35.10158 -32.96454 -31.73821 -30.62418 -30.12869 -27.15030 -25.47208 -23.85150 -22.39849 -21.91400 -20.70765 -19.70180 -18.52872 -17.63707 -17.05898 -16.96978 -16.76137 -16.39084 -16.00454 -15.68977 -15.21040 -14.82736 -14.78223 -14.36990 -14.02944 -13.88413 -13.64448 -13.58316 -13.46921 -13.20830 -12.94966 -12.94201 -12.86088 -12.75669 -12.49571 -12.25510 -12.04111 -11.99215 -11.91031 -11.77586 -11.56761 -11.40071 -11.34136 -10.95404 -10.71203 -10.57889 -9.26693 -8.21697 -6.33558 -0.84867 1.38942 1.41172 1.52015 1.97235 2.39441 2.80526 3.11415 3.16927 3.26632 3.65175 3.69386 3.79149 4.04797 4.13734 4.26807 4.27547 4.40375 4.43463 4.47431 4.52806 4.55898 4.61373 4.62125 4.76748 4.89157 5.00747 5.03597 5.07612 5.12789 5.18046 5.26493 5.30162 5.38338 5.43279 5.51336 5.66633 5.78663 6.15392 6.31322 6.59597 6.83700 7.35722 8.90572 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034763 B = 0.002672 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.261313 B =10475.455093 C =10866.825755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 2.403 3.597 3 O -0.993 6.993 4 O -0.984 6.984 5 C -0.590 4.590 6 C -0.082 4.082 7 C -0.143 4.143 8 C -0.108 4.108 9 C 0.085 3.915 10 N -0.698 5.698 11 C 0.086 3.914 12 C 0.032 3.968 13 C -0.546 4.546 14 H 0.059 0.941 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.262 1.262 21 C -0.120 4.120 22 C -0.095 4.095 23 H 0.155 0.845 24 H 0.131 0.869 25 H 0.154 0.846 26 H 0.169 0.831 27 H 0.163 0.837 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.340 0.660 35 H 0.018 0.982 36 H 0.052 0.948 37 H -0.009 1.009 38 H -0.007 1.007 39 H 0.264 0.736 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.110 8.487 1.727 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.592 3.408 3 O -0.991 6.991 4 O -0.981 6.981 5 C -0.720 4.720 6 C -0.102 4.102 7 C -0.181 4.181 8 C -0.146 4.146 9 C -0.025 4.025 10 N -0.329 5.329 11 C -0.042 4.042 12 C -0.005 4.005 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.186 1.186 21 C -0.158 4.158 22 C -0.134 4.134 23 H 0.173 0.827 24 H 0.149 0.851 25 H 0.173 0.827 26 H 0.187 0.813 27 H 0.181 0.819 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.158 0.842 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.010 0.990 38 H 0.011 0.989 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -29.210 9.174 0.496 30.621 hybrid contribution 0.351 -1.495 0.714 1.693 sum -28.859 7.680 1.210 29.888 Atomic orbital electron populations 1.30088 1.21796 1.13926 1.13206 1.07927 0.80025 0.74429 0.78399 1.93543 1.81121 1.36917 1.87478 1.93543 1.80452 1.67290 1.56799 1.30241 1.03842 1.16173 1.21780 1.20945 0.91719 1.00071 0.97420 1.22088 0.94973 1.01132 0.99911 1.21486 0.95869 1.01000 0.96251 1.21629 0.86717 0.97989 0.96117 1.60503 1.12219 1.34874 1.25330 1.21777 0.95575 0.88432 0.98459 1.18917 0.91290 0.95327 0.94968 1.21612 0.93367 1.03103 1.40369 0.92273 1.26002 0.97402 1.01022 0.95396 1.70110 1.03994 1.36974 1.46091 0.85400 0.77943 0.79034 0.78371 1.19824 1.20476 1.18646 1.21731 0.96769 0.99465 0.97853 1.21493 0.94154 1.02826 0.94914 0.82681 0.85052 0.82745 0.81283 0.81879 0.90502 0.90173 0.90459 0.92496 0.93801 0.94288 0.84184 0.96391 0.92996 0.99022 0.98907 0.92686 0.91561 0.91035 0.88921 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.56 10.62 113.37 1.20 -0.35 16 2 S 2.40 30.55 5.15 -56.49 -0.29 30.26 16 3 O -0.99 -22.11 18.10 -127.37 -2.31 -24.42 16 4 O -0.98 -21.60 15.46 -127.37 -1.97 -23.57 16 5 C -0.59 -4.19 5.26 71.98 0.38 -3.82 16 6 C -0.08 -1.34 2.19 -10.80 -0.02 -1.36 16 7 C -0.14 -3.24 4.84 30.59 0.15 -3.09 16 8 C -0.11 -3.19 5.43 30.60 0.17 -3.02 16 9 C 0.08 2.46 2.49 44.92 0.11 2.57 16 10 N -0.70 -25.98 6.31 -491.55 -3.10 -29.08 16 11 C 0.09 3.85 5.42 86.31 0.47 4.32 16 12 C 0.03 1.80 5.23 29.85 0.16 1.96 16 13 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 16 N -0.93 -58.23 13.29 21.45 0.28 -57.95 16 17 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 21 C -0.12 -2.59 5.19 30.59 0.16 -2.43 16 22 C -0.09 -1.38 5.20 30.59 0.16 -1.22 16 23 H 0.15 -0.41 8.14 -2.39 -0.02 -0.43 16 24 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.15 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.17 -0.01 8.14 -2.39 -0.02 -0.02 16 27 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 1.94 5.40 -2.39 -0.01 1.93 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.47 7.45 -2.39 -0.02 1.45 16 33 H 0.04 1.14 7.80 -2.38 -0.02 1.12 16 34 H 0.34 12.05 8.34 -89.69 -0.75 11.30 16 35 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 36 H 0.05 2.36 7.44 -2.39 -0.02 2.34 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -83.35 350.12 -1.51 -84.86 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.22 Total: 10.60 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.62 Total: -38.02 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -2.82 Total: -87.03 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -4.27 Total: -47.99 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 30.55 SS G_CDS: -0.29 Total: 30.26 kcal Total: -83.35 -1.51 -84.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340362482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.967 kcal (2) G-P(sol) polarization free energy of solvation -83.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds