Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99854 * 2 1 4 4 O 1.20824 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99795 * 180.02562 * 3 2 1 6 6 N 1.46904 * 109.47118 * 177.37125 * 5 3 2 7 7 C 1.46907 * 110.99338 * 284.66422 * 6 5 3 8 8 C 1.50705 * 109.46418 * 170.00000 * 7 6 5 9 9 C 1.38633 * 119.74936 * 270.29234 * 8 7 6 10 10 C 1.37615 * 120.24942 * 180.30900 * 9 8 7 11 11 C 1.40721 * 119.74147 * 359.42812 * 10 9 8 12 12 C 1.41398 * 120.24036 * 180.30139 * 11 10 9 13 13 H 1.07998 * 120.00059 * 26.76555 * 12 11 10 14 14 C 1.39948 * 119.99724 * 206.75856 * 12 11 10 15 15 N 1.30830 * 119.99575 * 11.91556 * 14 12 11 16 16 Si 1.86791 * 120.00266 * 191.90974 * 14 12 11 17 17 H 1.48504 * 109.46960 * 60.00163 * 16 14 12 18 18 H 1.48501 * 109.47327 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47344 * 300.00749 * 16 14 12 20 20 C 1.40715 * 119.51151 * 0.27094 * 11 10 9 21 21 C 1.37619 * 119.74626 * 0.02562 * 20 11 10 22 22 C 1.46897 * 111.00257 * 160.71249 * 6 5 3 23 23 C 1.53001 * 117.49608 * 12.14749 * 22 6 5 24 24 C 1.53002 * 117.49980 * 303.48961 * 22 6 5 25 25 H 1.08995 * 109.47280 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47436 * 300.00215 * 1 2 3 27 27 H 1.09008 * 109.47133 * 60.00357 * 1 2 3 28 28 H 1.08996 * 109.47754 * 57.36420 * 5 3 2 29 29 H 1.09007 * 109.46910 * 297.36480 * 5 3 2 30 30 H 1.09000 * 109.47351 * 50.00046 * 7 6 5 31 31 H 1.08993 * 109.47345 * 289.99968 * 7 6 5 32 32 H 1.08007 * 119.87829 * 0.02562 * 9 8 7 33 33 H 1.08000 * 120.13246 * 179.69930 * 10 9 8 34 34 H 0.97008 * 119.99486 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.12393 * 180.02562 * 20 11 10 36 36 H 1.07998 * 119.87545 * 179.97438 * 21 20 11 37 37 H 1.08998 * 115.55068 * 157.81525 * 22 6 5 38 38 H 1.08992 * 117.50390 * 359.97438 * 23 22 6 39 39 H 1.09006 * 117.49483 * 145.02217 * 23 22 6 40 40 H 1.08991 * 117.49840 * 214.98654 * 24 22 6 41 41 H 1.08998 * 117.49230 * 359.97340 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9828 2.6822 -0.0640 7 6 3.8018 3.2242 -1.4174 8 6 4.0021 4.7177 -1.3911 9 6 2.9210 5.5527 -1.1546 10 6 3.0910 6.9182 -1.1347 11 6 4.3705 7.4655 -1.3437 12 6 4.5583 8.8667 -1.3191 13 1 3.8909 9.4910 -0.7437 14 6 5.6092 9.4445 -2.0404 15 7 6.2710 8.7322 -2.9158 16 14 6.0669 11.2326 -1.7535 17 1 6.4598 11.4213 -0.3338 18 1 7.2037 11.6003 -2.6353 19 1 4.9005 12.0980 -2.0633 20 6 5.4616 6.6080 -1.5766 21 6 5.2671 5.2458 -1.5982 22 6 5.3725 2.8407 0.3850 23 6 6.2106 1.5713 0.5501 24 6 5.7247 2.3340 1.7851 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 3.9578 0.7407 -0.8662 29 1 3.9542 0.8220 0.9119 30 1 2.7944 2.9988 -1.7673 31 1 4.5299 2.7717 -2.0904 32 1 1.9407 5.1302 -0.9899 33 1 2.2466 7.5671 -0.9551 34 1 6.9992 9.1328 -3.4161 35 1 6.4479 7.0174 -1.7377 36 1 6.1029 4.5858 -1.7771 37 1 5.8814 3.7374 0.0315 38 1 5.7308 0.6187 0.3260 39 1 7.2711 1.6331 0.3055 40 1 6.4654 2.8973 2.3525 41 1 4.9251 1.8836 2.3731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343538084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -25.593963 kcal Electronic energy + Delta-G solvation = -22729.099974 eV Core-core repulsion = 19382.145654 eV Total energy + Delta-G solvation = -3346.954320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.49859 -38.83058 -37.25976 -36.33725 -34.19048 -33.18396 -30.64020 -29.21559 -28.71371 -27.08554 -25.58820 -23.42939 -22.33255 -21.63978 -20.85286 -20.09443 -19.25734 -17.85159 -17.22774 -16.74466 -16.55163 -15.63728 -15.39955 -15.13895 -14.49072 -13.90210 -13.81352 -13.51251 -13.38302 -13.18960 -12.56394 -12.38928 -12.28784 -11.97659 -11.86139 -11.70323 -11.44257 -11.37431 -11.05131 -10.94930 -10.82735 -10.66703 -10.44837 -10.32499 -10.22484 -10.11608 -9.52539 -9.29050 -9.12876 -7.94060 -7.37785 -7.19696 -6.67113 -4.31819 2.30694 2.54383 2.80188 3.08549 3.11932 3.14592 3.21631 3.89903 3.97167 4.23843 4.70645 4.80722 4.93131 5.00745 5.02213 5.09575 5.11240 5.13519 5.24045 5.41526 5.67553 5.76409 5.81371 5.92090 5.97767 6.14672 6.19769 6.32072 6.36902 6.41668 6.54567 6.99427 7.12937 7.16415 7.26941 7.38786 7.46445 7.69113 7.87597 7.94854 8.11661 8.20428 8.37323 8.69923 8.95795 9.03538 10.25985 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.003723 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.710985 B = 7518.701082 C = 8270.374303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.475 6.475 5 C 0.056 3.944 6 N -0.487 5.487 7 C 0.121 3.879 8 C -0.202 4.202 9 C -0.065 4.065 10 C -0.226 4.226 11 C 0.112 3.888 12 C -0.462 4.462 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.802 5.802 16 Si 0.910 3.090 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.161 4.161 21 C -0.099 4.099 22 C 0.037 3.963 23 C -0.230 4.230 24 C -0.177 4.177 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.279 0.721 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -15.341 4.412 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.294 3.706 4 O -0.359 6.359 5 C -0.073 4.073 6 N -0.209 5.209 7 C -0.004 4.004 8 C -0.204 4.204 9 C -0.083 4.083 10 C -0.245 4.245 11 C 0.109 3.891 12 C -0.493 4.493 13 H 0.093 0.907 14 C -0.143 4.143 15 N -0.428 5.428 16 Si 0.735 3.265 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.181 4.181 21 C -0.118 4.118 22 C -0.072 4.072 23 C -0.269 4.269 24 C -0.215 4.215 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.609 -14.732 4.524 15.631 hybrid contribution 0.494 0.378 -0.429 0.756 sum -2.115 -14.354 4.096 15.076 Atomic orbital electron populations 1.23203 0.76565 1.03281 1.02622 1.86474 1.23270 1.34000 1.84877 1.23775 0.92089 0.81345 0.73395 1.90717 1.66530 1.35954 1.42694 1.21676 0.88072 0.93201 1.04339 1.61613 1.19361 1.12545 1.27382 1.20845 0.99802 0.94042 0.85710 1.18756 0.94398 0.91623 1.15623 1.20386 0.96546 0.93314 0.98101 1.21024 0.96458 0.93861 1.13175 1.17634 0.90376 0.93313 0.87730 1.19576 1.11039 0.92499 1.26152 0.90659 1.25889 0.94863 1.00274 0.93250 1.69799 1.17665 1.37948 1.17379 0.86344 0.78674 0.82193 0.79320 1.18922 1.20415 1.19092 1.21351 0.99575 0.91380 1.05779 1.20529 0.94574 0.95305 1.01407 1.22845 0.87620 0.97833 0.98879 1.23641 1.01177 0.97487 1.04609 1.23068 1.03109 1.03939 0.91378 0.88383 0.91972 0.91956 0.90612 0.86901 0.91262 0.95251 0.89153 0.89157 0.91023 0.86165 0.89792 0.84320 0.88827 0.88750 0.88365 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.37 -4.44 10.57 -39.27 -0.41 -4.86 16 3 C 0.45 6.52 7.57 36.00 0.27 6.79 16 4 O -0.48 -8.56 15.07 -18.75 -0.28 -8.85 16 5 C 0.06 0.72 4.22 -4.98 -0.02 0.70 16 6 N -0.49 -7.94 4.27 -229.51 -0.98 -8.92 16 7 C 0.12 2.21 4.74 -4.97 -0.02 2.19 16 8 C -0.20 -4.46 5.04 -104.33 -0.53 -4.99 16 9 C -0.06 -1.53 9.67 -39.66 -0.38 -1.92 16 10 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 11 C 0.11 3.03 5.57 -106.82 -0.59 2.44 16 12 C -0.46 -12.50 9.07 -37.74 -0.34 -12.85 16 13 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 14 C 0.07 1.87 5.25 -17.34 -0.09 1.78 16 15 N -0.80 -20.90 10.77 55.55 0.60 -20.30 16 16 Si 0.91 18.99 29.58 -169.99 -5.03 13.96 16 17 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 C -0.16 -4.18 8.68 -38.87 -0.34 -4.52 16 21 C -0.10 -2.27 7.94 -39.66 -0.31 -2.58 16 22 C 0.04 0.56 5.82 -67.71 -0.39 0.16 16 23 C -0.23 -2.65 9.57 -26.69 -0.26 -2.90 16 24 C -0.18 -2.21 9.90 -26.69 -0.26 -2.48 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 27 H 0.06 0.60 8.13 -51.92 -0.42 0.17 16 28 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 29 H 0.11 1.23 5.56 -51.92 -0.29 0.94 16 30 H 0.07 1.29 6.70 -51.93 -0.35 0.94 16 31 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 32 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 33 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 35 H 0.12 3.22 6.11 -52.49 -0.32 2.90 16 36 H 0.08 1.72 7.47 -52.49 -0.39 1.32 16 37 H 0.14 2.39 5.27 -51.93 -0.27 2.12 16 38 H 0.09 0.94 6.07 -51.93 -0.32 0.62 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.10 7.37 -51.93 -0.38 0.72 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -29.73 338.32 -9.25 -38.98 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.65 Total: 7.79 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -2.59 Total: -22.90 kcal Atomic # 7 Polarization: -28.84 SS G_CDS: -0.38 Total: -29.22 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.70 Total: -13.70 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.73 -9.25 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.385 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds