Wall clock time and date at job start Tue Mar 31 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99854 * 2 1 4 4 O 1.20824 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99795 * 180.02562 * 3 2 1 6 6 N 1.46904 * 109.47118 * 177.37125 * 5 3 2 7 7 C 1.46907 * 110.99338 * 284.66422 * 6 5 3 8 8 C 1.50705 * 109.46418 * 170.00000 * 7 6 5 9 9 C 1.38633 * 119.74936 * 270.29234 * 8 7 6 10 10 C 1.37615 * 120.24942 * 180.30900 * 9 8 7 11 11 C 1.40721 * 119.74147 * 359.42812 * 10 9 8 12 12 C 1.41398 * 120.24036 * 180.30139 * 11 10 9 13 13 H 1.07998 * 120.00059 * 26.76555 * 12 11 10 14 14 C 1.39948 * 119.99724 * 206.75856 * 12 11 10 15 15 N 1.30830 * 119.99575 * 11.91556 * 14 12 11 16 16 Si 1.86791 * 120.00266 * 191.90974 * 14 12 11 17 17 H 1.48504 * 109.46960 * 60.00163 * 16 14 12 18 18 H 1.48501 * 109.47327 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47344 * 300.00749 * 16 14 12 20 20 C 1.40715 * 119.51151 * 0.27094 * 11 10 9 21 21 C 1.37619 * 119.74626 * 0.02562 * 20 11 10 22 22 C 1.46897 * 111.00257 * 160.71249 * 6 5 3 23 23 C 1.53001 * 117.49608 * 12.14749 * 22 6 5 24 24 C 1.53002 * 117.49980 * 303.48961 * 22 6 5 25 25 H 1.08995 * 109.47280 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47436 * 300.00215 * 1 2 3 27 27 H 1.09008 * 109.47133 * 60.00357 * 1 2 3 28 28 H 1.08996 * 109.47754 * 57.36420 * 5 3 2 29 29 H 1.09007 * 109.46910 * 297.36480 * 5 3 2 30 30 H 1.09000 * 109.47351 * 50.00046 * 7 6 5 31 31 H 1.08993 * 109.47345 * 289.99968 * 7 6 5 32 32 H 1.08007 * 119.87829 * 0.02562 * 9 8 7 33 33 H 1.08000 * 120.13246 * 179.69930 * 10 9 8 34 34 H 0.97008 * 119.99486 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.12393 * 180.02562 * 20 11 10 36 36 H 1.07998 * 119.87545 * 179.97438 * 21 20 11 37 37 H 1.08998 * 115.55068 * 157.81525 * 22 6 5 38 38 H 1.08992 * 117.50390 * 359.97438 * 23 22 6 39 39 H 1.09006 * 117.49483 * 145.02217 * 23 22 6 40 40 H 1.08991 * 117.49840 * 214.98654 * 24 22 6 41 41 H 1.08998 * 117.49230 * 359.97340 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9828 2.6822 -0.0640 7 6 3.8018 3.2242 -1.4174 8 6 4.0021 4.7177 -1.3911 9 6 2.9210 5.5527 -1.1546 10 6 3.0910 6.9182 -1.1347 11 6 4.3705 7.4655 -1.3437 12 6 4.5583 8.8667 -1.3191 13 1 3.8909 9.4910 -0.7437 14 6 5.6092 9.4445 -2.0404 15 7 6.2710 8.7322 -2.9158 16 14 6.0669 11.2326 -1.7535 17 1 6.4598 11.4213 -0.3338 18 1 7.2037 11.6003 -2.6353 19 1 4.9005 12.0980 -2.0633 20 6 5.4616 6.6080 -1.5766 21 6 5.2671 5.2458 -1.5982 22 6 5.3725 2.8407 0.3850 23 6 6.2106 1.5713 0.5501 24 6 5.7247 2.3340 1.7851 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 3.9578 0.7407 -0.8662 29 1 3.9542 0.8220 0.9119 30 1 2.7944 2.9988 -1.7673 31 1 4.5299 2.7717 -2.0904 32 1 1.9407 5.1302 -0.9899 33 1 2.2466 7.5671 -0.9551 34 1 6.9992 9.1328 -3.4161 35 1 6.4479 7.0174 -1.7377 36 1 6.1029 4.5858 -1.7771 37 1 5.8814 3.7374 0.0315 38 1 5.7308 0.6187 0.3260 39 1 7.2711 1.6331 0.3055 40 1 6.4654 2.8973 2.3525 41 1 4.9251 1.8836 2.3731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343538084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:54 Heat of formation + Delta-G solvation = -41.890741 kcal Electronic energy + Delta-G solvation = -22729.806655 eV Core-core repulsion = 19382.145654 eV Total energy + Delta-G solvation = -3347.661001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.58647 -40.11056 -38.95219 -37.40554 -35.85817 -34.63061 -32.27863 -31.13343 -29.98426 -28.33958 -26.95215 -25.05465 -23.26600 -23.10903 -22.34715 -21.83814 -20.49283 -19.20702 -18.90136 -17.83508 -17.58451 -17.15027 -16.70469 -16.42557 -15.99323 -15.59659 -15.33080 -14.88342 -14.60547 -14.26828 -14.18748 -13.85953 -13.69092 -13.46470 -13.28286 -12.97079 -12.85637 -12.67372 -12.61695 -12.33895 -12.31218 -12.03936 -11.82953 -11.73860 -11.43428 -11.32652 -11.28873 -11.08256 -11.00869 -9.33591 -9.19726 -9.01154 -8.57662 -6.33780 0.94030 1.17667 1.23038 1.37944 1.48910 1.50959 1.66296 2.22215 2.65443 2.91598 3.18746 3.72445 3.82489 3.94673 4.06630 4.13063 4.14546 4.23062 4.32863 4.33987 4.36108 4.43770 4.62943 4.65324 4.71662 4.73958 4.80314 5.02268 5.04070 5.11829 5.17927 5.28048 5.37474 5.40213 5.50491 5.73237 5.91979 6.05517 6.08870 6.13096 6.30823 6.42526 6.72301 6.83769 6.96982 7.05831 8.37712 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.003723 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.710985 B = 7518.701082 C = 8270.374303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.456 3.544 4 O -0.521 6.521 5 C 0.057 3.943 6 N -0.505 5.505 7 C 0.131 3.869 8 C -0.188 4.188 9 C -0.074 4.074 10 C -0.244 4.244 11 C 0.080 3.920 12 C -0.504 4.504 13 H 0.070 0.930 14 C 0.034 3.966 15 N -0.831 5.831 16 Si 0.984 3.016 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.262 1.262 20 C -0.182 4.182 21 C -0.092 4.092 22 C 0.003 3.997 23 C -0.198 4.198 24 C -0.173 4.173 25 H 0.135 0.865 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.287 0.713 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -17.675 4.804 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.299 3.701 4 O -0.408 6.408 5 C -0.071 4.071 6 N -0.228 5.228 7 C 0.004 3.996 8 C -0.189 4.189 9 C -0.092 4.092 10 C -0.264 4.264 11 C 0.078 3.922 12 C -0.534 4.534 13 H 0.088 0.912 14 C -0.180 4.180 15 N -0.458 5.458 16 Si 0.805 3.195 17 H -0.185 1.185 18 H -0.189 1.189 19 H -0.187 1.187 20 C -0.201 4.201 21 C -0.111 4.111 22 C -0.106 4.106 23 C -0.237 4.237 24 C -0.211 4.211 25 H 0.153 0.847 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.797 -17.112 4.923 17.897 hybrid contribution 0.168 0.888 -0.520 1.043 sum -1.629 -16.224 4.403 16.890 Atomic orbital electron populations 1.23494 0.75049 1.05596 1.02168 1.86468 1.24729 1.32620 1.84179 1.24126 0.92726 0.81246 0.72044 1.90709 1.67576 1.37503 1.45058 1.21815 0.87146 0.91433 1.06687 1.61374 1.20604 1.15095 1.25723 1.20658 0.99982 0.91246 0.87678 1.19181 0.93313 0.94107 1.12324 1.20561 0.97553 0.92863 0.98263 1.21166 0.96192 0.94900 1.14152 1.17948 0.91230 0.94037 0.88977 1.19804 1.12809 0.92878 1.27886 0.91198 1.26719 0.94099 1.04866 0.92317 1.69852 1.18091 1.39955 1.17855 0.85232 0.78644 0.76261 0.79399 1.18530 1.18946 1.18688 1.21338 0.98723 0.92708 1.07379 1.20747 0.95840 0.94455 1.00034 1.22714 0.87530 0.98996 1.01350 1.23704 1.01244 0.96538 1.02239 1.23147 1.03291 1.03755 0.90860 0.84667 0.92402 0.92549 0.87954 0.84355 0.91827 0.93543 0.88503 0.89319 0.90262 0.87588 0.87170 0.87151 0.86532 0.87760 0.88101 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -7.82 10.57 -51.46 -0.54 -8.37 16 3 C 0.46 12.21 7.57 71.23 0.54 12.75 16 4 O -0.52 -18.49 15.07 21.97 0.33 -18.16 16 5 C 0.06 1.29 4.22 85.56 0.36 1.65 16 6 N -0.51 -15.50 4.27 -880.04 -3.76 -19.26 16 7 C 0.13 4.57 4.74 85.56 0.41 4.98 16 8 C -0.19 -8.29 5.04 -19.67 -0.10 -8.39 16 9 C -0.07 -3.59 9.67 22.22 0.21 -3.37 16 10 C -0.24 -13.08 9.80 22.73 0.22 -12.86 16 11 C 0.08 4.56 5.57 -21.29 -0.12 4.44 16 12 C -0.50 -28.51 9.07 23.46 0.21 -28.30 16 13 H 0.07 3.85 7.87 -2.91 -0.02 3.83 16 14 C 0.03 1.75 5.25 85.26 0.45 2.20 16 15 N -0.83 -44.42 10.77 21.83 0.24 -44.19 16 16 Si 0.98 39.51 29.58 68.60 2.03 41.54 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 20 C -0.18 -9.78 8.68 22.73 0.20 -9.58 16 21 C -0.09 -4.25 7.94 22.22 0.18 -4.07 16 22 C 0.00 0.07 5.82 44.92 0.26 0.34 16 23 C -0.20 -3.78 9.57 30.62 0.29 -3.49 16 24 C -0.17 -3.85 9.90 30.62 0.30 -3.54 16 25 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.06 1.01 8.13 -2.38 -0.02 0.99 16 28 H 0.10 1.82 7.79 -2.39 -0.02 1.80 16 29 H 0.14 2.42 5.56 -2.38 -0.01 2.41 16 30 H 0.06 2.30 6.70 -2.39 -0.02 2.29 16 31 H 0.05 1.46 8.06 -2.39 -0.02 1.44 16 32 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 35 H 0.11 5.92 6.11 -2.91 -0.02 5.90 16 36 H 0.11 4.42 7.47 -2.91 -0.02 4.40 16 37 H 0.11 3.72 5.27 -2.39 -0.01 3.71 16 38 H 0.12 1.71 6.07 -2.39 -0.01 1.69 16 39 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.10 2.07 7.37 -2.39 -0.02 2.05 16 Total: -1.00 -67.47 338.32 3.94 -63.53 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 1.03 Total: 30.46 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 4.61 Total: -45.55 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -3.52 Total: -63.45 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.21 Total: -26.52 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -67.47 3.94 -63.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.635 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds