Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99590 * 2 1 4 4 O 1.20828 * 120.00492 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99716 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.36866 * 57.82021 * 5 3 2 7 7 C 1.54379 * 110.32324 * 295.63357 * 5 3 2 8 8 N 1.48562 * 104.59486 * 264.95594 * 7 5 3 9 9 C 1.46895 * 110.99842 * 200.96032 * 8 7 5 10 10 C 1.50699 * 109.47480 * 290.12664 * 9 8 7 11 11 H 1.08003 * 119.99700 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99974 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00117 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47102 * 89.99830 * 14 12 10 16 16 H 1.48500 * 109.47311 * 209.99877 * 14 12 10 17 17 H 1.48497 * 109.46727 * 330.00054 * 14 12 10 18 18 C 1.48562 * 104.22433 * 320.51965 * 8 7 5 19 19 C 1.54266 * 110.32280 * 179.97438 * 5 3 2 20 20 H 1.09003 * 110.32265 * 359.97438 * 19 5 3 21 21 C 1.50699 * 110.32266 * 237.79227 * 19 5 3 22 22 C 1.38234 * 120.00046 * 299.72736 * 21 19 5 23 23 C 1.38236 * 120.00168 * 179.74271 * 22 21 19 24 24 C 1.38238 * 119.99650 * 0.55107 * 23 22 21 25 25 C 1.38235 * 120.00226 * 359.70385 * 24 23 22 26 26 C 1.38239 * 120.00000 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.46911 * 60.00911 * 1 2 3 28 28 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47716 * 300.00384 * 1 2 3 30 30 H 1.08998 * 110.41264 * 23.73974 * 7 5 3 31 31 H 1.08999 * 110.40920 * 146.17940 * 7 5 3 32 32 H 1.08998 * 109.47299 * 50.13133 * 9 8 7 33 33 H 1.09002 * 109.47092 * 170.12977 * 9 8 7 34 34 H 0.97000 * 119.99935 * 179.97438 * 13 12 10 35 35 H 1.09000 * 110.41111 * 280.70631 * 18 8 7 36 36 H 1.08989 * 110.41482 * 158.25895 * 18 8 7 37 37 H 1.07995 * 119.99905 * 359.97438 * 22 21 19 38 38 H 1.07996 * 120.00269 * 180.26874 * 23 22 21 39 39 H 1.08002 * 120.00149 * 179.71956 * 24 23 22 40 40 H 1.08002 * 120.00048 * 180.02562 * 25 24 23 41 41 H 1.07995 * 120.00318 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9740 0.7512 -0.8640 7 6 4.1340 0.6778 1.3061 8 7 4.3212 1.8477 2.2024 9 6 5.2881 1.5463 3.2665 10 6 4.6843 0.5553 4.2279 11 1 3.6823 0.1866 4.0651 12 6 5.4106 0.1201 5.3160 13 7 4.8834 -0.7444 6.1554 14 14 7.1429 0.7594 5.5989 15 1 7.0880 1.9830 6.4385 16 1 7.9473 -0.2798 6.2905 17 1 7.7704 1.0832 4.2926 18 6 4.8322 2.9164 1.3059 19 6 4.0256 2.7476 -0.0002 20 1 3.1625 3.4134 -0.0014 21 6 4.9010 3.0223 -1.1957 22 6 6.0812 2.3224 -1.3635 23 6 6.8816 2.5705 -2.4630 24 6 6.5073 3.5266 -3.3886 25 6 5.3297 4.2302 -3.2181 26 6 4.5265 3.9781 -2.1215 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.4248 -0.0257 1.7423 31 1 5.0889 0.1878 1.1162 32 1 6.1912 1.1225 2.8274 33 1 5.5391 2.4632 3.7998 34 1 5.3946 -1.0508 6.9207 35 1 5.8964 2.7767 1.1159 36 1 4.6486 3.8984 1.7418 37 1 6.3761 1.5792 -0.6377 38 1 7.8015 2.0207 -2.5964 39 1 7.1348 3.7237 -4.2452 40 1 5.0371 4.9768 -3.9415 41 1 3.6067 4.5280 -1.9880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374072271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = -71.739238 kcal Electronic energy + Delta-G solvation = -23164.958655 eV Core-core repulsion = 19816.003326 eV Total energy + Delta-G solvation = -3348.955329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99998 -40.51183 -39.02461 -37.51333 -35.31654 -33.84989 -31.99416 -31.73692 -30.07098 -28.47540 -28.28641 -24.78036 -24.16709 -23.47954 -22.34371 -21.82663 -20.66504 -19.00461 -18.62873 -17.98249 -17.78312 -17.33642 -16.68320 -16.26199 -16.09186 -15.58987 -15.54817 -14.88199 -14.63532 -14.51136 -14.19696 -14.17870 -13.94994 -13.83327 -13.65348 -13.04666 -12.98737 -12.91229 -12.52662 -12.40751 -12.30420 -12.18658 -11.89914 -11.81023 -11.71089 -11.67861 -11.46982 -11.39919 -10.78358 -9.79377 -9.62658 -9.24237 -8.28316 -6.32732 0.42876 0.52935 1.11649 1.36137 1.37012 1.47576 1.72290 2.34491 2.84930 3.04304 3.16054 3.41469 3.57594 3.76301 4.00357 4.05171 4.15267 4.21207 4.28232 4.31345 4.32155 4.37061 4.43401 4.60410 4.65039 4.67776 4.69406 4.77659 4.80434 4.91395 5.02427 5.06118 5.13393 5.21534 5.34975 5.49780 5.61062 5.65565 5.75363 5.90601 6.04567 6.14692 6.54215 6.67951 6.73072 7.31034 8.88474 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.005580 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.264887 B = 5016.862854 C = 6770.272822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.478 3.522 4 O -0.529 6.529 5 C -0.073 4.073 6 H 0.135 0.865 7 C 0.061 3.939 8 N -0.523 5.523 9 C 0.163 3.837 10 C -0.518 4.518 11 H 0.033 0.967 12 C 0.010 3.990 13 N -0.947 5.947 14 Si 0.948 3.052 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.246 1.246 18 C 0.039 3.961 19 C -0.036 4.036 20 H 0.098 0.902 21 C -0.083 4.083 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.122 4.122 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.002 0.998 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 6.513 -21.488 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.322 3.678 4 O -0.418 6.418 5 C -0.093 4.093 6 H 0.153 0.847 7 C -0.067 4.067 8 N -0.247 5.247 9 C 0.036 3.964 10 C -0.557 4.557 11 H 0.051 0.949 12 C -0.187 4.187 13 N -0.588 5.588 14 Si 0.771 3.229 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.170 1.170 18 C -0.089 4.089 19 C -0.055 4.055 20 H 0.116 0.884 21 C -0.084 4.084 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.139 4.139 26 C -0.140 4.140 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.020 0.980 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.903 6.851 -21.043 22.148 hybrid contribution 0.764 -0.322 0.655 1.056 sum 1.667 6.529 -20.388 21.473 Atomic orbital electron populations 1.23547 0.74764 1.05696 1.02448 1.86498 1.25144 1.32813 1.83656 1.23639 0.92241 0.81217 0.70722 1.90575 1.67488 1.37014 1.46719 1.21952 0.87195 0.98910 1.01212 0.84684 1.22829 1.00469 0.93775 0.89627 1.65284 1.44034 1.06067 1.09341 1.20097 0.90287 0.95473 0.90551 1.21186 1.01270 1.24449 1.08745 0.94861 1.25842 1.02835 0.94869 0.95184 1.70054 1.39774 1.33698 1.15273 0.85711 0.79192 0.78421 0.79607 1.19298 1.20667 1.16974 1.23288 0.97366 0.96761 0.91491 1.20841 0.98009 0.94194 0.92472 0.88399 1.19674 0.95496 0.97731 0.95477 1.21157 0.94478 1.00076 0.98634 1.21408 1.00091 0.98448 0.94040 1.21500 0.96998 0.95900 0.99777 1.21432 0.94777 1.00141 0.97580 1.21254 1.00416 0.97673 0.94681 0.90995 0.85104 0.92857 0.91608 0.91823 0.98041 0.95262 0.92388 0.92685 0.90004 0.86363 0.84194 0.83607 0.83829 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.36 -11.26 10.41 -51.40 -0.54 -11.80 16 3 C 0.48 15.98 7.16 71.24 0.51 16.49 16 4 O -0.53 -19.56 15.00 21.96 0.33 -19.23 16 5 C -0.07 -2.23 3.00 -10.64 -0.03 -2.27 16 6 H 0.14 3.41 7.37 -2.39 -0.02 3.39 16 7 C 0.06 2.30 5.50 86.45 0.48 2.77 16 8 N -0.52 -22.03 5.36 -885.96 -4.75 -26.78 16 9 C 0.16 7.78 3.64 85.56 0.31 8.09 16 10 C -0.52 -30.12 9.37 25.60 0.24 -29.88 16 11 H 0.03 2.18 7.85 -2.91 -0.02 2.16 16 12 C 0.01 0.59 5.47 84.65 0.46 1.05 16 13 N -0.95 -59.34 13.96 21.44 0.30 -59.04 16 14 Si 0.95 43.56 27.47 68.60 1.88 45.45 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.25 -10.38 6.54 99.48 0.65 -9.73 16 18 C 0.04 1.29 5.92 86.47 0.51 1.80 16 19 C -0.04 -1.06 2.87 -10.63 -0.03 -1.10 16 20 H 0.10 3.12 6.25 -2.39 -0.01 3.11 16 21 C -0.08 -2.05 4.74 -19.87 -0.09 -2.14 16 22 C -0.13 -2.84 8.18 22.27 0.18 -2.66 16 23 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 24 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 25 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 26 C -0.12 -2.66 9.68 22.27 0.22 -2.44 16 27 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 28 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.07 2.81 7.53 -2.39 -0.02 2.79 16 31 H 0.06 2.25 7.82 -2.39 -0.02 2.23 16 32 H 0.00 0.09 6.94 -2.39 -0.02 0.07 16 33 H 0.03 1.38 7.56 -2.39 -0.02 1.36 16 34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.05 1.72 6.62 -2.39 -0.02 1.70 16 36 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.12 2.74 7.63 -2.91 -0.02 2.72 16 38 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.12 2.58 7.97 -2.91 -0.02 2.55 16 Total: -1.00 -71.51 337.77 2.81 -68.70 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.96 Total: 16.83 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 4.62 Total: -14.14 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -4.45 Total: -85.81 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.21 Total: -31.03 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.45 kcal Total: -71.51 2.81 -68.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374072271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.034 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds