Wall clock time and date at job start Tue Mar 31 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99707 * 2 1 4 4 O 1.20822 * 120.00444 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99747 * 180.02562 * 3 2 1 6 6 C 1.50703 * 110.27105 * 302.08794 * 5 3 2 7 7 C 1.38234 * 120.00247 * 351.54880 * 6 5 3 8 8 C 1.38236 * 120.00073 * 179.79033 * 7 6 5 9 9 C 1.38231 * 119.99833 * 0.46078 * 8 7 6 10 10 C 1.38240 * 120.00339 * 359.76854 * 9 8 7 11 11 C 1.38233 * 119.99658 * 0.02562 * 10 9 8 12 12 C 1.55040 * 110.36293 * 64.19512 * 5 3 2 13 13 C 1.54938 * 102.71544 * 97.04996 * 12 5 3 14 14 N 1.48540 * 103.37647 * 37.39854 * 13 12 5 15 15 C 1.46897 * 111.00031 * 200.19854 * 14 13 12 16 16 C 1.50706 * 109.47155 * 69.87071 * 15 14 13 17 17 H 1.08000 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99718 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00412 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99710 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47079 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47321 * 120.00414 * 20 18 16 23 23 H 1.48505 * 109.47171 * 239.99919 * 20 18 16 24 24 C 1.47897 * 105.81865 * 320.71070 * 14 13 12 25 25 H 1.08995 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47228 * 300.00111 * 1 2 3 27 27 H 1.09004 * 109.47081 * 59.99962 * 1 2 3 28 28 H 1.07998 * 119.99760 * 359.97438 * 7 6 5 29 29 H 1.07998 * 120.00085 * 180.25159 * 8 7 6 30 30 H 1.08000 * 119.99991 * 179.79312 * 9 8 7 31 31 H 1.08000 * 120.00197 * 180.02562 * 10 9 8 32 32 H 1.07998 * 119.99949 * 179.97438 * 11 10 9 33 33 H 1.08994 * 110.90576 * 338.72042 * 12 5 3 34 34 H 1.09001 * 110.73996 * 215.29961 * 12 5 3 35 35 H 1.09002 * 110.66727 * 278.88348 * 13 12 5 36 36 H 1.08994 * 110.67011 * 155.92121 * 13 12 5 37 37 H 1.08999 * 109.47225 * 189.87720 * 15 14 13 38 38 H 1.09004 * 109.47078 * 309.87429 * 15 14 13 39 39 H 0.97001 * 119.99853 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.91580 * 144.68437 * 24 14 13 41 41 H 1.09004 * 109.92163 * 265.97460 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1275 0.5521 1.1968 7 6 3.2795 0.0935 2.1874 8 6 3.7939 -0.5734 3.2836 9 6 5.1572 -0.7733 3.3937 10 6 6.0058 -0.3105 2.4054 11 6 5.4910 0.3526 1.3072 12 6 4.1377 0.6716 -1.3095 13 6 4.3646 1.9247 -2.1920 14 7 4.8330 2.9477 -1.2223 15 6 4.6484 4.3034 -1.7569 16 6 3.1773 4.6263 -1.8104 17 1 2.4521 3.8974 -1.4799 18 6 2.7573 5.8525 -2.2804 19 7 3.6404 6.7403 -2.6824 20 14 0.9339 6.2530 -2.3461 21 1 0.1542 5.0948 -1.8403 22 1 0.6575 7.4422 -1.5008 23 1 0.5405 6.5406 -3.7488 24 6 4.0245 2.7451 -0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2147 0.2537 2.1035 29 1 3.1309 -0.9352 4.0555 30 1 5.5594 -1.2913 4.2518 31 1 7.0709 -0.4671 2.4913 32 1 6.1539 0.7144 0.5353 33 1 3.4176 -0.0020 -1.7740 34 1 5.0802 0.1584 -1.1187 35 1 3.4324 2.2383 -2.6618 36 1 5.1277 1.7313 -2.9458 37 1 5.1546 5.0208 -1.1110 38 1 5.0691 4.3585 -2.7609 39 1 3.3449 7.6029 -3.0133 40 1 4.6305 2.9452 0.8832 41 1 3.1566 3.4045 -0.0159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428781819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:33 Heat of formation + Delta-G solvation = -44.793387 kcal Electronic energy + Delta-G solvation = -23992.908899 eV Core-core repulsion = 20645.122030 eV Total energy + Delta-G solvation = -3347.786869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00019 -39.04540 -37.77353 -36.09656 -33.66186 -32.07106 -30.87731 -29.83445 -28.20261 -27.56230 -26.09105 -23.70745 -22.85447 -22.05879 -21.51962 -20.13001 -19.26733 -17.74209 -16.90590 -16.54362 -16.30743 -15.80339 -15.24423 -14.66859 -14.58422 -14.31314 -13.86835 -13.37439 -13.28041 -13.01017 -12.95947 -12.91909 -12.42958 -12.14412 -12.03046 -11.66540 -11.19131 -11.16468 -10.99838 -10.82895 -10.75246 -10.72013 -10.63206 -10.47499 -10.13705 -10.01042 -9.82136 -9.45347 -8.83307 -8.56839 -8.38041 -7.27736 -5.98941 -4.05502 1.40693 1.48288 2.44944 2.84093 3.31552 3.39661 3.49763 3.83710 4.48362 4.65614 4.75381 4.93985 5.04008 5.06382 5.15626 5.19744 5.22507 5.24663 5.32101 5.33624 5.51720 5.57289 5.65734 5.77751 5.90040 6.01896 6.09857 6.14490 6.41263 6.46571 6.49586 6.57097 6.60867 6.66898 6.71846 6.92212 7.05636 7.15965 7.58558 7.93185 7.95888 8.03828 8.11128 8.33402 9.06653 9.61608 11.07332 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.005805 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.240302 B = 4822.102220 C = 5643.568233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.480 6.480 5 C -0.021 4.021 6 C -0.057 4.057 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.126 4.126 10 C -0.120 4.120 11 C -0.099 4.099 12 C -0.107 4.107 13 C 0.034 3.966 14 N -0.516 5.516 15 C 0.175 3.825 16 C -0.551 4.551 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.892 5.892 20 Si 0.883 3.117 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.041 3.959 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.260 0.740 40 H 0.072 0.928 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -17.274 8.521 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.364 6.364 5 C -0.023 4.023 6 C -0.058 4.058 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.144 4.144 10 C -0.138 4.138 11 C -0.117 4.117 12 C -0.145 4.145 13 C -0.094 4.094 14 N -0.240 5.240 15 C 0.049 3.951 16 C -0.590 4.590 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.531 5.531 20 Si 0.711 3.289 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.087 4.087 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.299 -16.811 8.550 18.863 hybrid contribution -2.241 0.607 -0.247 2.335 sum -1.943 -16.204 8.303 18.311 Atomic orbital electron populations 1.23232 0.77088 1.03235 1.02620 1.86559 1.22750 1.33660 1.84550 1.23485 0.91739 0.81296 0.72434 1.90736 1.66425 1.35925 1.43355 1.20521 0.86299 0.99616 0.95849 1.19437 0.94020 0.97775 0.94523 1.21096 0.99318 0.98562 0.94131 1.21027 0.95427 0.99548 0.97793 1.21109 0.93601 1.00665 0.99026 1.21119 0.99672 0.98718 0.94261 1.21057 0.94336 0.97908 0.98384 1.22801 1.01116 0.98193 0.92388 1.23163 1.00164 0.90619 0.95446 1.65264 1.49353 1.06288 1.03072 1.19897 0.95686 0.83742 0.95739 1.21959 0.93426 1.00804 1.42819 0.90869 1.24931 0.97357 0.96295 0.95015 1.69970 1.33321 1.06745 1.43073 0.86644 0.86142 0.78588 0.77496 1.19342 1.20970 1.21123 1.23180 0.99926 0.90215 0.95381 0.88362 0.92118 0.91903 0.86633 0.86325 0.86370 0.85991 0.84828 0.90904 0.89499 0.92616 0.90678 0.94784 0.94974 0.92993 0.90955 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.38 8.97 -39.27 -0.35 -5.73 16 3 C 0.47 8.47 5.18 36.01 0.19 8.66 16 4 O -0.48 -10.41 14.19 -18.75 -0.27 -10.68 16 5 C -0.02 -0.36 0.75 -155.21 -0.12 -0.48 16 6 C -0.06 -0.86 4.62 -104.62 -0.48 -1.34 16 7 C -0.11 -1.58 8.82 -39.58 -0.35 -1.93 16 8 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 9 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 10 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 11 C -0.10 -1.33 8.46 -39.58 -0.33 -1.67 16 12 C -0.11 -1.68 6.03 -24.63 -0.15 -1.83 16 13 C 0.03 0.66 6.36 -1.89 -0.01 0.64 16 14 N -0.52 -11.09 5.54 -231.89 -1.28 -12.37 16 15 C 0.18 4.56 5.30 -4.97 -0.03 4.54 16 16 C -0.55 -15.50 7.00 -34.44 -0.24 -15.74 16 17 H 0.07 2.09 5.17 -52.49 -0.27 1.82 16 18 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 19 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 20 Si 0.88 22.44 29.54 -169.99 -5.02 17.42 16 21 H -0.27 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.04 0.84 5.42 -2.76 -0.01 0.83 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.12 1.63 5.91 -52.49 -0.31 1.32 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.78 7.28 -52.49 -0.38 1.40 16 33 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 34 H 0.09 1.20 6.44 -51.93 -0.33 0.87 16 35 H 0.06 1.20 7.04 -51.93 -0.37 0.84 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 1.44 7.53 -51.93 -0.39 1.05 16 41 H 0.11 2.56 3.68 -51.93 -0.19 2.37 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -31.94 329.02 -8.58 -40.52 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.58 Total: 2.24 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.76 Total: -10.38 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.55 Total: -38.35 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.62 Total: -16.41 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.94 -8.58 -40.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428781819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.273 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds