Wall clock time and date at job start Tue Mar 31 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99707 * 2 1 4 4 O 1.20822 * 120.00444 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99747 * 180.02562 * 3 2 1 6 6 C 1.50703 * 110.27105 * 302.08794 * 5 3 2 7 7 C 1.38234 * 120.00247 * 351.54880 * 6 5 3 8 8 C 1.38236 * 120.00073 * 179.79033 * 7 6 5 9 9 C 1.38231 * 119.99833 * 0.46078 * 8 7 6 10 10 C 1.38240 * 120.00339 * 359.76854 * 9 8 7 11 11 C 1.38233 * 119.99658 * 0.02562 * 10 9 8 12 12 C 1.55040 * 110.36293 * 64.19512 * 5 3 2 13 13 C 1.54938 * 102.71544 * 97.04996 * 12 5 3 14 14 N 1.48540 * 103.37647 * 37.39854 * 13 12 5 15 15 C 1.46897 * 111.00031 * 200.19854 * 14 13 12 16 16 C 1.50706 * 109.47155 * 69.87071 * 15 14 13 17 17 H 1.08000 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99718 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00412 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99710 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47079 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47321 * 120.00414 * 20 18 16 23 23 H 1.48505 * 109.47171 * 239.99919 * 20 18 16 24 24 C 1.47897 * 105.81865 * 320.71070 * 14 13 12 25 25 H 1.08995 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47228 * 300.00111 * 1 2 3 27 27 H 1.09004 * 109.47081 * 59.99962 * 1 2 3 28 28 H 1.07998 * 119.99760 * 359.97438 * 7 6 5 29 29 H 1.07998 * 120.00085 * 180.25159 * 8 7 6 30 30 H 1.08000 * 119.99991 * 179.79312 * 9 8 7 31 31 H 1.08000 * 120.00197 * 180.02562 * 10 9 8 32 32 H 1.07998 * 119.99949 * 179.97438 * 11 10 9 33 33 H 1.08994 * 110.90576 * 338.72042 * 12 5 3 34 34 H 1.09001 * 110.73996 * 215.29961 * 12 5 3 35 35 H 1.09002 * 110.66727 * 278.88348 * 13 12 5 36 36 H 1.08994 * 110.67011 * 155.92121 * 13 12 5 37 37 H 1.08999 * 109.47225 * 189.87720 * 15 14 13 38 38 H 1.09004 * 109.47078 * 309.87429 * 15 14 13 39 39 H 0.97001 * 119.99853 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.91580 * 144.68437 * 24 14 13 41 41 H 1.09004 * 109.92163 * 265.97460 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1275 0.5521 1.1968 7 6 3.2795 0.0935 2.1874 8 6 3.7939 -0.5734 3.2836 9 6 5.1572 -0.7733 3.3937 10 6 6.0058 -0.3105 2.4054 11 6 5.4910 0.3526 1.3072 12 6 4.1377 0.6716 -1.3095 13 6 4.3646 1.9247 -2.1920 14 7 4.8330 2.9477 -1.2223 15 6 4.6484 4.3034 -1.7569 16 6 3.1773 4.6263 -1.8104 17 1 2.4521 3.8974 -1.4799 18 6 2.7573 5.8525 -2.2804 19 7 3.6404 6.7403 -2.6824 20 14 0.9339 6.2530 -2.3461 21 1 0.1542 5.0948 -1.8403 22 1 0.6575 7.4422 -1.5008 23 1 0.5405 6.5406 -3.7488 24 6 4.0245 2.7451 -0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2147 0.2537 2.1035 29 1 3.1309 -0.9352 4.0555 30 1 5.5594 -1.2913 4.2518 31 1 7.0709 -0.4671 2.4913 32 1 6.1539 0.7144 0.5353 33 1 3.4176 -0.0020 -1.7740 34 1 5.0802 0.1584 -1.1187 35 1 3.4324 2.2383 -2.6618 36 1 5.1277 1.7313 -2.9458 37 1 5.1546 5.0208 -1.1110 38 1 5.0691 4.3585 -2.7609 39 1 3.3449 7.6029 -3.0133 40 1 4.6305 2.9452 0.8832 41 1 3.1566 3.4045 -0.0159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428781819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:33 Heat of formation + Delta-G solvation = -64.776854 kcal Electronic energy + Delta-G solvation = -23993.775447 eV Core-core repulsion = 20645.122030 eV Total energy + Delta-G solvation = -3348.653417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.35544 -40.21795 -39.15942 -37.50534 -35.44456 -33.86154 -31.85424 -31.24360 -29.45783 -28.91309 -27.95138 -25.34202 -24.21748 -23.19880 -22.73069 -21.83911 -20.64358 -19.05818 -18.61069 -18.01698 -17.80224 -17.01335 -16.70543 -16.19638 -15.91549 -15.55623 -15.33325 -14.89080 -14.55261 -14.43588 -14.30581 -14.13728 -14.00087 -13.74528 -13.16270 -13.02858 -12.94539 -12.77979 -12.52742 -12.45640 -12.32001 -12.12930 -12.00695 -11.91110 -11.81869 -11.70335 -11.60523 -11.28675 -10.62752 -9.77211 -9.59110 -9.17019 -8.20356 -6.34543 0.43512 0.54565 1.04985 1.27477 1.30034 1.44851 1.60082 2.34420 2.86000 3.06251 3.34003 3.49251 3.60960 3.61646 3.90083 4.11531 4.18315 4.25003 4.26288 4.35627 4.37087 4.48587 4.61747 4.66240 4.76375 4.81687 4.85354 4.90088 5.03506 5.07176 5.15217 5.18011 5.21168 5.31688 5.37541 5.60922 5.66807 5.69556 5.73653 5.95287 6.14060 6.19632 6.24480 6.64047 6.87089 7.35417 8.84378 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.005805 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.240302 B = 4822.102220 C = 5643.568233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.350 6.350 3 C 0.474 3.526 4 O -0.527 6.527 5 C -0.016 4.016 6 C -0.076 4.076 7 C -0.128 4.128 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.117 4.117 11 C -0.109 4.109 12 C -0.093 4.093 13 C 0.031 3.969 14 N -0.510 5.510 15 C 0.190 3.810 16 C -0.554 4.554 17 H 0.066 0.934 18 C 0.016 3.984 19 N -0.924 5.924 20 Si 0.945 3.055 21 H -0.278 1.278 22 H -0.276 1.276 23 H -0.272 1.272 24 C 0.044 3.956 25 H 0.142 0.858 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.024 0.976 36 H 0.094 0.906 37 H 0.007 0.993 38 H 0.013 0.987 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -20.059 9.882 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.266 6.266 3 C 0.317 3.683 4 O -0.415 6.415 5 C -0.018 4.018 6 C -0.077 4.077 7 C -0.147 4.147 8 C -0.138 4.138 9 C -0.136 4.136 10 C -0.135 4.135 11 C -0.127 4.127 12 C -0.131 4.131 13 C -0.097 4.097 14 N -0.233 5.233 15 C 0.063 3.937 16 C -0.593 4.593 17 H 0.084 0.916 18 C -0.183 4.183 19 N -0.564 5.564 20 Si 0.771 3.229 21 H -0.203 1.203 22 H -0.202 1.202 23 H -0.198 1.198 24 C -0.084 4.084 25 H 0.160 0.840 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.124 0.876 29 H 0.161 0.839 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.043 0.957 36 H 0.112 0.888 37 H 0.025 0.975 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.417 -19.632 9.910 21.995 hybrid contribution -2.270 1.375 -0.584 2.717 sum -1.853 -18.257 9.325 20.584 Atomic orbital electron populations 1.23585 0.75136 1.05940 1.02201 1.86545 1.24585 1.31738 1.83715 1.23655 0.92113 0.81405 0.71116 1.90716 1.67440 1.37566 1.45785 1.20361 0.86076 0.97397 0.97984 1.19297 0.94926 0.99287 0.94171 1.21139 0.98881 0.99651 0.94984 1.21340 0.96504 0.98562 0.97361 1.21530 0.93073 0.99480 0.99559 1.21459 1.01258 0.97438 0.93339 1.21127 0.93528 0.98589 0.99419 1.22789 1.02808 0.96680 0.90775 1.23235 0.99160 0.91381 0.95899 1.65171 1.49659 1.04541 1.03942 1.19540 0.94197 0.85863 0.94139 1.22170 0.94335 1.00733 1.42078 0.91596 1.25674 1.01339 0.96345 0.94949 1.70060 1.35071 1.07222 1.44018 0.85694 0.81210 0.77964 0.78025 1.20330 1.20182 1.19770 1.23007 0.98119 0.92528 0.94782 0.84014 0.92046 0.92941 0.87597 0.83897 0.83072 0.83315 0.85064 0.89309 0.86840 0.95732 0.88805 0.97522 0.96855 0.92644 0.90829 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.56 113.37 1.20 1.75 16 2 O -0.35 -10.18 8.97 -51.45 -0.46 -10.64 16 3 C 0.47 17.31 5.18 71.24 0.37 17.68 16 4 O -0.53 -23.78 14.19 21.97 0.31 -23.47 16 5 C -0.02 -0.56 0.75 -52.64 -0.04 -0.60 16 6 C -0.08 -2.20 4.62 -19.86 -0.09 -2.29 16 7 C -0.13 -3.39 8.82 22.27 0.20 -3.19 16 8 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 9 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 10 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 11 C -0.11 -2.69 8.46 22.27 0.19 -2.51 16 12 C -0.09 -2.82 6.03 31.96 0.19 -2.62 16 13 C 0.03 1.20 6.36 86.65 0.55 1.76 16 14 N -0.51 -22.59 5.54 -887.55 -4.91 -27.50 16 15 C 0.19 10.36 5.30 85.56 0.45 10.81 16 16 C -0.55 -32.50 7.00 25.60 0.18 -32.32 16 17 H 0.07 3.95 5.17 -2.91 -0.02 3.93 16 18 C 0.02 0.97 5.46 84.65 0.46 1.43 16 19 N -0.92 -56.78 13.29 21.45 0.28 -56.49 16 20 Si 0.95 47.40 29.54 68.60 2.03 49.43 16 21 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 24 C 0.04 1.87 5.42 86.45 0.47 2.34 16 25 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.11 2.92 5.91 -2.91 -0.02 2.91 16 29 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 31 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.13 3.25 7.28 -2.91 -0.02 3.23 16 33 H 0.09 2.43 7.76 -2.39 -0.02 2.41 16 34 H 0.11 2.86 6.44 -2.39 -0.02 2.85 16 35 H 0.02 1.09 7.04 -2.39 -0.02 1.08 16 36 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.01 0.77 8.08 -2.39 -0.02 0.75 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 40 H 0.07 3.04 7.53 -2.39 -0.02 3.02 16 41 H 0.07 3.40 3.68 -2.38 -0.01 3.39 16 Total: -1.00 -72.25 329.02 3.08 -69.17 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.03 Total: 13.36 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.80 Total: -13.87 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -4.63 Total: -83.99 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.15 Total: -34.10 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -72.25 3.08 -69.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428781819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.398 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds