Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42100 * 108.57446 * 2 1 4 4 O 1.42102 * 108.57968 * 228.98213 * 2 1 3 5 5 C 1.81396 * 101.92118 * 114.48794 * 2 1 3 6 6 H 1.09001 * 108.98523 * 66.05086 * 5 2 1 7 7 C 1.54502 * 109.05955 * 307.08824 * 5 2 1 8 8 C 1.50456 * 108.85377 * 162.26098 * 7 5 2 9 9 C 1.54297 * 113.03110 * 92.15800 * 8 7 5 10 10 C 1.54070 * 112.28725 * 318.29737 * 9 8 7 11 11 N 1.44266 * 111.98563 * 318.92210 * 10 9 8 12 12 C 1.46905 * 110.99750 * 219.30710 * 11 10 9 13 13 C 1.52995 * 109.47154 * 303.29548 * 12 11 10 14 14 C 1.53000 * 109.47445 * 182.21958 * 13 12 11 15 15 C 1.50692 * 109.47341 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00175 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99856 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00067 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99897 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47254 * 119.99752 * 19 17 15 22 22 H 1.48503 * 109.46910 * 239.99829 * 19 17 15 23 23 C 1.45866 * 109.05287 * 184.99963 * 5 2 1 24 24 H 1.08996 * 109.46902 * 305.50705 * 1 2 3 25 25 H 1.09002 * 109.46996 * 65.51332 * 1 2 3 26 26 H 1.09007 * 109.46801 * 185.50868 * 1 2 3 27 27 H 1.09001 * 109.57524 * 282.07834 * 7 5 2 28 28 H 1.08999 * 109.57360 * 42.32813 * 7 5 2 29 29 H 1.08999 * 108.77250 * 213.07055 * 8 7 5 30 30 H 1.08998 * 108.77328 * 331.35928 * 8 7 5 31 31 H 1.08996 * 108.91867 * 79.02549 * 9 8 7 32 32 H 1.09004 * 108.91730 * 197.57633 * 9 8 7 33 33 H 1.08999 * 108.97944 * 198.26743 * 10 9 8 34 34 H 1.09010 * 108.97637 * 79.56445 * 10 9 8 35 35 H 1.09002 * 109.46481 * 183.29812 * 12 11 10 36 36 H 1.09002 * 109.47166 * 63.29948 * 12 11 10 37 37 H 1.09007 * 109.47028 * 62.21642 * 13 12 11 38 38 H 1.09006 * 109.47150 * 302.22286 * 13 12 11 39 39 H 1.09001 * 109.46745 * 300.00321 * 14 13 12 40 40 H 1.08998 * 109.46807 * 59.99460 * 14 13 12 41 41 H 0.96998 * 119.99724 * 180.02562 * 18 17 15 42 42 H 1.09004 * 108.79211 * 60.98978 * 23 5 2 43 43 H 1.09002 * 108.70378 * 302.69682 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8840 -1.0163 5 6 2.1888 -0.7357 1.6152 6 1 1.8527 -1.7726 1.6191 7 6 1.4313 0.0444 2.7128 8 6 1.3805 -0.7963 3.9596 9 6 2.5555 -0.5217 4.9211 10 6 3.8950 -0.3631 4.1765 11 7 4.0366 -1.3232 3.1091 12 6 5.4139 -1.8288 3.0351 13 6 6.3793 -0.6550 2.8595 14 6 7.8083 -1.1854 2.7270 15 6 8.7593 -0.0292 2.5547 16 1 8.3822 0.9827 2.5407 17 6 10.1108 -0.2633 2.4139 18 7 10.5699 -1.4956 2.4304 19 14 11.2896 1.1699 2.1996 20 1 10.5273 2.4443 2.2146 21 1 12.2761 1.1696 3.3095 22 1 12.0023 1.0351 0.9038 23 6 3.6310 -0.7018 1.8308 24 1 -0.3633 0.5969 0.8365 25 1 -0.3633 0.4260 -0.9353 26 1 -0.3633 -1.0230 0.0987 27 1 1.9528 0.9783 2.9230 28 1 0.4180 0.2603 2.3742 29 1 0.4454 -0.5933 4.4816 30 1 1.4012 -1.8481 3.6745 31 1 2.3503 0.3925 5.4780 32 1 2.6380 -1.3507 5.6241 33 1 4.7125 -0.4974 4.8849 34 1 3.9515 0.6423 3.7589 35 1 5.5070 -2.5060 2.1860 36 1 5.6546 -2.3631 3.9542 37 1 6.3145 0.0017 3.7272 38 1 6.1139 -0.0974 1.9613 39 1 8.0737 -1.7430 3.6252 40 1 7.8731 -1.8421 1.8594 41 1 11.5207 -1.6602 2.3318 42 1 3.9628 0.3365 1.8242 43 1 4.1193 -1.2312 1.0125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444801183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = -78.193510 kcal Electronic energy + Delta-G solvation = -22140.532435 eV Core-core repulsion = 18926.741179 eV Total energy + Delta-G solvation = -3213.791256 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.55487 -37.13475 -36.16105 -35.53924 -33.26830 -32.81495 -31.05954 -29.89087 -27.53738 -25.46435 -25.09189 -23.11257 -21.31239 -20.42335 -19.09371 -18.95068 -17.36066 -16.49776 -16.29847 -16.13281 -15.66066 -15.27630 -14.65042 -14.55240 -14.21830 -14.02674 -13.61333 -13.36725 -13.27833 -13.01897 -12.59608 -12.40043 -12.22149 -12.14013 -12.10908 -11.67614 -11.37881 -11.22822 -11.12914 -10.96010 -10.86151 -10.80000 -10.68443 -10.52012 -10.37852 -10.19507 -9.66561 -9.50342 -9.15180 -8.34097 -8.02095 -5.98770 -4.01193 -0.22956 2.51984 3.32251 3.39709 3.41980 3.44371 3.73337 4.10895 4.15296 4.45994 4.47608 4.52792 4.72684 4.78260 4.90596 5.08868 5.14024 5.25708 5.32568 5.36362 5.38000 5.58579 5.62292 5.71902 5.76431 5.79057 5.91911 6.01863 6.04409 6.19909 6.21757 6.24633 6.53563 6.73755 7.02214 7.23804 7.38730 7.67222 7.80735 8.00514 8.43836 9.05866 9.63154 11.12370 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.004024 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.673904 B = 6957.207596 C = 7781.354479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.414 3.586 3 O -0.935 6.935 4 O -0.938 6.938 5 C -0.555 4.555 6 H 0.144 0.856 7 C -0.105 4.105 8 C -0.103 4.103 9 C -0.110 4.110 10 C 0.047 3.953 11 N -0.517 5.517 12 C 0.051 3.949 13 C -0.147 4.147 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.058 3.942 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.058 0.942 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.590 0.994 1.089 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.596 3.404 3 O -0.932 6.932 4 O -0.935 6.935 5 C -0.665 4.665 6 H 0.162 0.838 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.082 4.082 11 N -0.240 5.240 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.014 4.014 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.071 4.071 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.171 0.776 0.499 24.188 hybrid contribution 0.765 1.051 0.293 1.332 sum -23.406 1.827 0.792 23.490 Atomic orbital electron populations 1.30329 1.27132 1.11614 1.11622 1.08217 0.78353 0.76100 0.77715 1.93600 1.78736 1.34396 1.86438 1.93613 1.78888 1.67052 1.53906 1.29253 1.05671 1.12691 1.18844 0.83803 1.21361 0.98698 0.99322 0.94908 1.21105 0.97692 1.00625 0.94734 1.21965 0.94117 1.01231 0.97510 1.21976 0.97367 0.94311 0.94558 1.61798 1.24567 1.35497 1.02088 1.22538 0.84620 0.97816 1.02659 1.22313 0.98679 0.97261 1.00382 1.19030 0.88810 0.96385 0.97160 1.21289 0.91885 0.93193 1.49480 0.92792 1.25021 0.98469 0.95564 0.95378 1.69971 1.13847 1.19004 1.50654 0.86558 0.81052 0.82828 0.77707 1.19758 1.21017 1.20968 1.20600 0.91050 1.00182 0.95304 0.85077 0.85361 0.85244 0.89819 0.91034 0.92503 0.91038 0.92318 0.91899 0.90993 0.93820 0.90783 0.90583 0.93132 0.93320 0.96570 0.96529 0.93068 0.92343 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.34 10.01 101.05 1.01 -2.33 16 2 S 2.41 23.86 4.83 -107.50 -0.52 23.34 16 3 O -0.93 -12.80 17.96 -57.83 -1.04 -13.84 16 4 O -0.94 -12.98 18.10 -57.83 -1.05 -14.03 16 5 C -0.55 -5.22 2.37 -29.32 -0.07 -5.29 16 6 H 0.14 1.08 7.59 -51.90 -0.39 0.68 16 7 C -0.10 -0.82 4.91 -27.21 -0.13 -0.95 16 8 C -0.10 -0.85 5.42 -27.32 -0.15 -0.99 16 9 C -0.11 -1.09 6.15 -25.49 -0.16 -1.25 16 10 C 0.05 0.61 4.04 -4.67 -0.02 0.59 16 11 N -0.52 -7.20 4.45 -239.55 -1.07 -8.27 16 12 C 0.05 0.85 5.05 -3.82 -0.02 0.83 16 13 C -0.15 -3.02 4.60 -26.73 -0.12 -3.14 16 14 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 23 C 0.06 0.77 3.13 -6.70 -0.02 0.75 16 24 H 0.13 0.42 6.31 -51.93 -0.33 0.10 16 25 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.08 0.74 7.15 -51.93 -0.37 0.37 16 28 H 0.07 0.32 5.49 -51.93 -0.29 0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.62 7.38 -51.93 -0.38 0.24 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.00 6.84 -51.93 -0.36 0.64 16 34 H 0.04 0.58 6.51 -51.92 -0.34 0.24 16 35 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 36 H 0.08 1.26 8.12 -51.93 -0.42 0.83 16 37 H 0.05 1.02 6.77 -51.93 -0.35 0.67 16 38 H 0.05 1.01 7.04 -51.93 -0.37 0.64 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.06 0.84 6.74 -51.93 -0.35 0.49 16 43 H 0.08 1.16 7.65 -51.93 -0.40 0.77 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -36.03 339.25 -10.32 -46.36 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -7.25 Total: -4.15 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -0.23 Total: -25.07 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.33 Total: -34.80 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -2.08 Total: -27.87 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 23.86 SS G_CDS: -0.52 Total: 23.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.03 -10.32 -46.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444801183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.838 kcal (2) G-P(sol) polarization free energy of solvation -36.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds