Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42100 * 108.57446 * 2 1 4 4 O 1.42102 * 108.57968 * 228.98213 * 2 1 3 5 5 C 1.81396 * 101.92118 * 114.48794 * 2 1 3 6 6 H 1.09001 * 108.98523 * 66.05086 * 5 2 1 7 7 C 1.54502 * 109.05955 * 307.08824 * 5 2 1 8 8 C 1.50456 * 108.85377 * 162.26098 * 7 5 2 9 9 C 1.54297 * 113.03110 * 92.15800 * 8 7 5 10 10 C 1.54070 * 112.28725 * 318.29737 * 9 8 7 11 11 N 1.44266 * 111.98563 * 318.92210 * 10 9 8 12 12 C 1.46905 * 110.99750 * 219.30710 * 11 10 9 13 13 C 1.52995 * 109.47154 * 303.29548 * 12 11 10 14 14 C 1.53000 * 109.47445 * 182.21958 * 13 12 11 15 15 C 1.50692 * 109.47341 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00175 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99856 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00067 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99897 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47254 * 119.99752 * 19 17 15 22 22 H 1.48503 * 109.46910 * 239.99829 * 19 17 15 23 23 C 1.45866 * 109.05287 * 184.99963 * 5 2 1 24 24 H 1.08996 * 109.46902 * 305.50705 * 1 2 3 25 25 H 1.09002 * 109.46996 * 65.51332 * 1 2 3 26 26 H 1.09007 * 109.46801 * 185.50868 * 1 2 3 27 27 H 1.09001 * 109.57524 * 282.07834 * 7 5 2 28 28 H 1.08999 * 109.57360 * 42.32813 * 7 5 2 29 29 H 1.08999 * 108.77250 * 213.07055 * 8 7 5 30 30 H 1.08998 * 108.77328 * 331.35928 * 8 7 5 31 31 H 1.08996 * 108.91867 * 79.02549 * 9 8 7 32 32 H 1.09004 * 108.91730 * 197.57633 * 9 8 7 33 33 H 1.08999 * 108.97944 * 198.26743 * 10 9 8 34 34 H 1.09010 * 108.97637 * 79.56445 * 10 9 8 35 35 H 1.09002 * 109.46481 * 183.29812 * 12 11 10 36 36 H 1.09002 * 109.47166 * 63.29948 * 12 11 10 37 37 H 1.09007 * 109.47028 * 62.21642 * 13 12 11 38 38 H 1.09006 * 109.47150 * 302.22286 * 13 12 11 39 39 H 1.09001 * 109.46745 * 300.00321 * 14 13 12 40 40 H 1.08998 * 109.46807 * 59.99460 * 14 13 12 41 41 H 0.96998 * 119.99724 * 180.02562 * 18 17 15 42 42 H 1.09004 * 108.79211 * 60.98978 * 23 5 2 43 43 H 1.09002 * 108.70378 * 302.69682 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8840 -1.0163 5 6 2.1888 -0.7357 1.6152 6 1 1.8527 -1.7726 1.6191 7 6 1.4313 0.0444 2.7128 8 6 1.3805 -0.7963 3.9596 9 6 2.5555 -0.5217 4.9211 10 6 3.8950 -0.3631 4.1765 11 7 4.0366 -1.3232 3.1091 12 6 5.4139 -1.8288 3.0351 13 6 6.3793 -0.6550 2.8595 14 6 7.8083 -1.1854 2.7270 15 6 8.7593 -0.0292 2.5547 16 1 8.3822 0.9827 2.5407 17 6 10.1108 -0.2633 2.4139 18 7 10.5699 -1.4956 2.4304 19 14 11.2896 1.1699 2.1996 20 1 10.5273 2.4443 2.2146 21 1 12.2761 1.1696 3.3095 22 1 12.0023 1.0351 0.9038 23 6 3.6310 -0.7018 1.8308 24 1 -0.3633 0.5969 0.8365 25 1 -0.3633 0.4260 -0.9353 26 1 -0.3633 -1.0230 0.0987 27 1 1.9528 0.9783 2.9230 28 1 0.4180 0.2603 2.3742 29 1 0.4454 -0.5933 4.4816 30 1 1.4012 -1.8481 3.6745 31 1 2.3503 0.3925 5.4780 32 1 2.6380 -1.3507 5.6241 33 1 4.7125 -0.4974 4.8849 34 1 3.9515 0.6423 3.7589 35 1 5.5070 -2.5060 2.1860 36 1 5.6546 -2.3631 3.9542 37 1 6.3145 0.0017 3.7272 38 1 6.1139 -0.0974 1.9613 39 1 8.0737 -1.7430 3.6252 40 1 7.8731 -1.8421 1.8594 41 1 11.5207 -1.6602 2.3318 42 1 3.9628 0.3365 1.8242 43 1 4.1193 -1.2312 1.0125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444801183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = -105.648959 kcal Electronic energy + Delta-G solvation = -22141.722992 eV Core-core repulsion = 18926.741179 eV Total energy + Delta-G solvation = -3214.981813 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60133 -38.03454 -37.05007 -36.78582 -35.17728 -33.67174 -32.82532 -30.45835 -28.94901 -26.99457 -25.95800 -24.64137 -22.87325 -21.50026 -20.21806 -19.76321 -18.60621 -18.08507 -17.35548 -17.00459 -16.64387 -16.50269 -16.39344 -15.59074 -15.34842 -15.19543 -14.68936 -14.31847 -14.11222 -13.91866 -13.82989 -13.70017 -13.39760 -13.18637 -13.06984 -13.03886 -12.83397 -12.67164 -12.54044 -12.36913 -12.17351 -11.95886 -11.75456 -11.68330 -11.52259 -11.36091 -11.28911 -11.17849 -10.93277 -10.60308 -9.32123 -8.24336 -6.36391 -0.95117 1.35151 1.36058 1.49237 1.84271 2.36630 2.63366 3.02000 3.07810 3.08207 3.45574 3.72071 3.93779 4.09369 4.11804 4.13622 4.19634 4.27074 4.30186 4.34603 4.41179 4.54440 4.57808 4.70770 4.83099 4.85485 4.93189 4.98598 5.08035 5.09998 5.15925 5.20233 5.36190 5.40644 5.44314 5.56389 5.64974 5.78952 5.98942 6.14573 6.21174 6.79738 7.33033 8.86926 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.004024 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.673904 B = 6957.207596 C = 7781.354479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.625 4.625 2 S 2.402 3.598 3 O -0.986 6.986 4 O -0.991 6.991 5 C -0.549 4.549 6 H 0.169 0.831 7 C -0.108 4.108 8 C -0.103 4.103 9 C -0.108 4.108 10 C 0.041 3.959 11 N -0.503 5.503 12 C 0.060 3.940 13 C -0.131 4.131 14 C 0.028 3.972 15 C -0.547 4.547 16 H 0.053 0.947 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.964 3.036 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.277 1.277 23 C 0.052 3.948 24 H 0.162 0.838 25 H 0.142 0.858 26 H 0.161 0.839 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.039 0.961 39 H -0.003 1.003 40 H -0.009 1.009 41 H 0.265 0.735 42 H 0.039 0.961 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.704 1.691 1.813 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.590 3.410 3 O -0.983 6.983 4 O -0.988 6.988 5 C -0.659 4.659 6 H 0.186 0.814 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.146 4.146 10 C -0.088 4.088 11 N -0.226 5.226 12 C -0.069 4.069 13 C -0.170 4.170 14 C -0.010 4.010 15 C -0.585 4.585 16 H 0.071 0.929 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.202 1.202 23 C -0.076 4.076 24 H 0.180 0.820 25 H 0.160 0.840 26 H 0.180 0.820 27 H 0.089 0.911 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.010 0.990 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.252 1.480 1.222 27.319 hybrid contribution 1.681 0.820 0.089 1.872 sum -25.571 2.300 1.310 25.707 Atomic orbital electron populations 1.30056 1.19405 1.14638 1.13825 1.08171 0.81322 0.74399 0.77099 1.93535 1.81483 1.36361 1.86923 1.93546 1.81667 1.67721 1.55868 1.29163 1.02970 1.14596 1.19159 0.81375 1.21523 1.00642 0.98283 0.94182 1.21139 0.97884 1.00565 0.94535 1.21962 0.92871 1.02045 0.97703 1.22104 0.99268 0.93474 0.93949 1.61942 1.21818 1.35981 1.02826 1.22355 0.85660 0.96224 1.02613 1.22106 0.96399 0.98548 0.99969 1.18927 0.91831 0.95285 0.94971 1.21700 0.93032 0.93825 1.49925 0.92891 1.25959 1.00381 0.98563 0.94721 1.70090 1.14571 1.21223 1.51176 0.85424 0.78534 0.79209 0.78047 1.18997 1.19853 1.20223 1.20672 0.94057 0.98628 0.94283 0.82039 0.83998 0.82030 0.91131 0.86537 0.89547 0.91130 0.90972 0.91774 0.92504 0.94736 0.91232 0.90201 0.92944 0.94196 0.98474 0.99042 0.92637 0.94231 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.34 10.01 113.37 1.13 -2.20 16 2 S 2.40 45.62 4.83 -56.49 -0.27 45.35 16 3 O -0.99 -27.60 17.96 -127.37 -2.29 -29.89 16 4 O -0.99 -28.16 18.10 -127.37 -2.31 -30.47 16 5 C -0.55 -9.51 2.37 28.92 0.07 -9.44 16 6 H 0.17 2.08 7.59 -2.40 -0.02 2.06 16 7 C -0.11 -1.33 4.91 30.28 0.15 -1.19 16 8 C -0.10 -1.30 5.42 30.21 0.16 -1.13 16 9 C -0.11 -1.91 6.15 31.40 0.19 -1.71 16 10 C 0.04 1.05 4.04 87.16 0.35 1.40 16 11 N -0.50 -14.18 4.45 -911.79 -4.06 -18.24 16 12 C 0.06 2.08 5.05 86.30 0.44 2.52 16 13 C -0.13 -5.67 4.60 30.59 0.14 -5.53 16 14 C 0.03 1.51 4.97 29.85 0.15 1.66 16 15 C -0.55 -32.63 9.11 25.60 0.23 -32.39 16 16 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 17 C 0.00 0.10 5.46 84.65 0.46 0.57 16 18 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 19 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C 0.05 1.44 3.13 83.94 0.26 1.70 16 24 H 0.16 -0.01 6.31 -2.39 -0.02 -0.02 16 25 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.16 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.07 1.10 7.15 -2.39 -0.02 1.09 16 28 H 0.12 0.38 5.49 -2.39 -0.01 0.36 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.94 7.38 -2.39 -0.02 0.93 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.61 6.84 -2.39 -0.02 1.60 16 34 H 0.03 0.94 6.51 -2.38 -0.02 0.93 16 35 H 0.07 2.48 7.91 -2.39 -0.02 2.46 16 36 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 37 H 0.05 2.21 6.77 -2.38 -0.02 2.20 16 38 H 0.04 1.76 7.04 -2.38 -0.02 1.75 16 39 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.04 1.22 6.74 -2.39 -0.02 1.20 16 43 H 0.06 1.95 7.65 -2.39 -0.02 1.93 16 Total: -1.00 -82.80 339.25 -1.89 -84.70 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 0.97 Total: 4.11 kcal Atomic # 6 Polarization: -49.49 SS G_CDS: 3.74 Total: -45.74 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -3.77 Total: -75.98 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -4.59 Total: -60.36 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 45.62 SS G_CDS: -0.27 Total: 45.35 kcal Total: -82.80 -1.89 -84.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444801183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.953 kcal (2) G-P(sol) polarization free energy of solvation -82.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds