Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42099 * 108.57969 * 2 1 4 4 O 1.42103 * 108.58221 * 228.97150 * 2 1 3 5 5 C 1.81408 * 101.92262 * 114.48528 * 2 1 3 6 6 H 1.09000 * 108.81221 * 301.51962 * 5 2 1 7 7 C 1.45875 * 108.83997 * 60.00147 * 5 2 1 8 8 C 1.54522 * 111.66927 * 182.21739 * 7 5 2 9 9 C 1.50546 * 108.96075 * 282.70558 * 8 7 5 10 10 C 1.54050 * 112.86231 * 91.61615 * 9 8 7 11 11 N 1.47942 * 113.41909 * 317.93237 * 10 9 8 12 12 C 1.46901 * 111.00380 * 192.12283 * 11 10 9 13 13 C 1.53005 * 109.46916 * 317.41002 * 12 11 10 14 14 C 1.52996 * 109.47049 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46806 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00652 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99775 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99788 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47080 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47262 * 119.99675 * 19 17 15 22 22 H 1.48500 * 109.46738 * 239.99819 * 19 17 15 23 23 C 1.44298 * 113.64385 * 318.07538 * 11 10 9 24 24 H 1.08998 * 109.47302 * 305.51840 * 1 2 3 25 25 H 1.09003 * 109.47430 * 65.51561 * 1 2 3 26 26 H 1.09007 * 109.47309 * 185.51374 * 1 2 3 27 27 H 1.08996 * 109.04542 * 61.64894 * 7 5 2 28 28 H 1.09007 * 108.98215 * 302.73883 * 7 5 2 29 29 H 1.09002 * 109.57419 * 42.58300 * 8 7 5 30 30 H 1.08998 * 109.57371 * 162.83368 * 8 7 5 31 31 H 1.08998 * 108.78736 * 212.70549 * 9 8 7 32 32 H 1.08998 * 108.78545 * 330.92099 * 9 8 7 33 33 H 1.08994 * 108.72166 * 196.87980 * 10 9 8 34 34 H 1.08999 * 108.61796 * 78.91370 * 10 9 8 35 35 H 1.09001 * 109.46881 * 77.40120 * 12 11 10 36 36 H 1.08996 * 109.47229 * 197.41010 * 12 11 10 37 37 H 1.09008 * 109.46649 * 299.99670 * 13 12 11 38 38 H 1.08999 * 109.47251 * 59.99458 * 13 12 11 39 39 H 1.08992 * 109.47219 * 299.99814 * 14 13 12 40 40 H 1.09002 * 109.47140 * 60.00478 * 14 13 12 41 41 H 0.97001 * 119.99548 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.70029 * 335.68683 * 23 11 10 43 43 H 1.09007 * 109.70059 * 215.10398 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.7335 -0.1239 2.3942 7 6 1.6106 -2.0739 1.6690 8 6 1.8447 -2.7418 3.0426 9 6 3.2662 -3.2327 3.1119 10 6 4.2297 -2.1929 3.7148 11 7 3.9873 -0.8162 3.2303 12 6 5.0938 0.0755 3.6024 13 6 5.5171 -0.2115 5.0445 14 6 6.6700 0.7167 5.4319 15 6 7.0865 0.4344 6.8524 16 1 6.5794 -0.3302 7.4221 17 6 8.1143 1.1532 7.4252 18 7 8.7315 2.0847 6.7316 19 14 8.6311 0.8028 9.1858 20 1 7.7861 -0.2839 9.7427 21 1 10.0557 0.3843 9.2095 22 1 8.4619 2.0299 10.0047 23 6 3.7154 -0.7402 1.8152 24 1 -0.3634 0.5970 0.8364 25 1 -0.3634 0.4259 -0.9353 26 1 -0.3634 -1.0230 0.0987 27 1 2.0650 -2.6890 0.8924 28 1 0.5384 -2.0046 1.4854 29 1 1.6700 -2.0155 3.8364 30 1 1.1617 -3.5831 3.1607 31 1 3.2959 -4.1375 3.7190 32 1 3.6026 -3.4774 2.1044 33 1 5.2519 -2.4766 3.4644 34 1 4.1217 -2.2059 4.7993 35 1 5.9384 -0.0956 2.9350 36 1 4.7686 1.1124 3.5188 37 1 4.6724 -0.0405 5.7119 38 1 5.8422 -1.2485 5.1282 39 1 7.5144 0.5454 4.7644 40 1 6.3452 1.7539 5.3482 41 1 9.4549 2.5900 7.1345 42 1 4.1494 -1.6036 1.3108 43 1 4.1420 0.1765 1.4078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444801185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -80.431545 kcal Electronic energy + Delta-G solvation = -21881.426321 eV Core-core repulsion = 18667.538017 eV Total energy + Delta-G solvation = -3213.888304 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.39999 -37.18436 -36.19061 -35.65749 -33.36115 -32.71135 -31.22136 -29.85302 -27.41982 -25.84540 -25.02017 -22.72525 -21.14802 -20.60610 -19.18397 -18.97489 -17.34194 -16.54043 -16.28400 -16.09240 -15.86005 -15.17241 -14.90945 -14.39302 -14.18127 -13.81941 -13.75984 -13.51614 -13.49412 -13.17592 -12.48129 -12.27272 -12.23026 -12.16420 -12.07643 -11.66197 -11.58005 -11.26032 -11.19424 -11.00267 -10.89668 -10.83614 -10.72982 -10.51005 -10.37384 -10.16305 -9.69177 -9.33609 -9.03877 -8.34292 -8.03891 -5.99177 -4.01448 -0.23713 2.50249 3.31215 3.37553 3.38713 3.42591 3.78074 3.99375 4.32477 4.40150 4.46811 4.47756 4.65371 4.70079 4.90834 4.95388 5.15429 5.28032 5.30603 5.36546 5.36862 5.43512 5.55152 5.62368 5.76240 5.84511 5.89560 5.94160 6.06030 6.12276 6.27000 6.28170 6.65840 6.76808 7.06527 7.33131 7.38201 7.68578 7.82992 8.00976 8.43675 9.05904 9.62566 11.12261 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027071 B = 0.003329 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.050714 B = 8407.868074 C = 9074.511912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.409 3.591 3 O -0.938 6.938 4 O -0.942 6.942 5 C -0.552 4.552 6 H 0.147 0.853 7 C -0.115 4.115 8 C -0.100 4.100 9 C -0.125 4.125 10 C 0.059 3.941 11 N -0.542 5.542 12 C 0.056 3.944 13 C -0.111 4.111 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.081 3.919 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.014 0.986 40 H 0.017 0.983 41 H 0.260 0.740 42 H 0.060 0.940 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.688 -9.151 -12.610 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.593 3.407 3 O -0.935 6.935 4 O -0.939 6.939 5 C -0.663 4.663 6 H 0.165 0.835 7 C -0.153 4.153 8 C -0.139 4.139 9 C -0.163 4.163 10 C -0.068 4.068 11 N -0.266 5.266 12 C -0.070 4.070 13 C -0.149 4.149 14 C -0.017 4.017 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.049 4.049 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.372 -8.550 -13.063 24.109 hybrid contribution 0.460 -0.557 1.194 1.396 sum -17.912 -9.107 -11.869 23.338 Atomic orbital electron populations 1.30306 1.27223 1.11504 1.11681 1.08339 0.78357 0.75874 0.78172 1.93611 1.78855 1.34461 1.86559 1.93575 1.78881 1.66948 1.54455 1.29082 1.06657 1.08692 1.21839 0.83480 1.20492 1.00096 0.93972 1.00750 1.21194 0.96279 1.00111 0.96300 1.21482 0.95301 0.98195 1.01276 1.22489 0.96912 0.86612 1.00822 1.60688 1.43812 1.09194 1.12913 1.22428 0.90028 0.96193 0.98368 1.21787 1.00034 1.00576 0.92515 1.19081 0.92022 0.94400 0.96188 1.21270 1.16885 1.19316 0.98211 0.92691 1.25036 0.96474 0.95175 0.97854 1.69977 1.23637 1.23133 1.36709 0.86548 0.78363 0.78139 0.85010 1.19766 1.21060 1.21014 1.21392 0.89736 1.02326 0.91481 0.85202 0.85459 0.85263 0.90332 0.91259 0.90200 0.91893 0.91286 0.92373 0.94493 0.90024 0.94967 0.90625 0.92548 0.93194 0.96767 0.96472 0.93068 0.92147 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.28 10.10 101.05 1.02 -2.26 16 2 S 2.41 22.02 4.75 -107.50 -0.51 21.51 16 3 O -0.94 -12.50 17.82 -57.83 -1.03 -13.53 16 4 O -0.94 -11.50 17.75 -57.83 -1.03 -12.53 16 5 C -0.55 -4.95 2.21 -29.59 -0.07 -5.01 16 6 H 0.15 1.17 8.08 -51.89 -0.42 0.75 16 7 C -0.11 -0.85 4.40 -29.30 -0.13 -0.98 16 8 C -0.10 -0.84 5.62 -27.16 -0.15 -0.99 16 9 C -0.12 -1.23 5.29 -27.41 -0.15 -1.37 16 10 C 0.06 0.76 4.16 -2.70 -0.01 0.75 16 11 N -0.54 -7.58 4.17 -234.55 -0.98 -8.55 16 12 C 0.06 0.96 4.94 -3.82 -0.02 0.95 16 13 C -0.11 -2.25 4.32 -26.73 -0.12 -2.37 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.08 0.99 4.75 -4.70 -0.02 0.97 16 24 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 26 H 0.13 0.40 6.75 -51.92 -0.35 0.05 16 27 H 0.08 0.59 7.36 -51.93 -0.38 0.21 16 28 H 0.07 0.30 6.17 -51.93 -0.32 -0.02 16 29 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.56 6.67 -51.93 -0.35 0.21 16 33 H 0.04 0.51 7.77 -51.93 -0.40 0.11 16 34 H 0.08 1.13 6.99 -51.93 -0.36 0.76 16 35 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 38 H 0.05 0.98 6.42 -51.93 -0.33 0.65 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.06 0.70 6.80 -51.93 -0.35 0.35 16 43 H 0.08 1.02 7.17 -51.93 -0.37 0.65 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -35.44 341.21 -10.27 -45.71 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -7.39 Total: -4.62 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -0.19 Total: -23.44 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.24 Total: -34.93 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -2.06 Total: -26.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 22.02 SS G_CDS: -0.51 Total: 21.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.44 -10.27 -45.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444801185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.722 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds