Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42099 * 108.57969 * 2 1 4 4 O 1.42103 * 108.58221 * 228.97150 * 2 1 3 5 5 C 1.81408 * 101.92262 * 114.48528 * 2 1 3 6 6 H 1.09000 * 108.81221 * 301.51962 * 5 2 1 7 7 C 1.45875 * 108.83997 * 60.00147 * 5 2 1 8 8 C 1.54522 * 111.66927 * 182.21739 * 7 5 2 9 9 C 1.50546 * 108.96075 * 282.70558 * 8 7 5 10 10 C 1.54050 * 112.86231 * 91.61615 * 9 8 7 11 11 N 1.47942 * 113.41909 * 317.93237 * 10 9 8 12 12 C 1.46901 * 111.00380 * 192.12283 * 11 10 9 13 13 C 1.53005 * 109.46916 * 317.41002 * 12 11 10 14 14 C 1.52996 * 109.47049 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46806 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00652 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99775 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99788 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47080 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47262 * 119.99675 * 19 17 15 22 22 H 1.48500 * 109.46738 * 239.99819 * 19 17 15 23 23 C 1.44298 * 113.64385 * 318.07538 * 11 10 9 24 24 H 1.08998 * 109.47302 * 305.51840 * 1 2 3 25 25 H 1.09003 * 109.47430 * 65.51561 * 1 2 3 26 26 H 1.09007 * 109.47309 * 185.51374 * 1 2 3 27 27 H 1.08996 * 109.04542 * 61.64894 * 7 5 2 28 28 H 1.09007 * 108.98215 * 302.73883 * 7 5 2 29 29 H 1.09002 * 109.57419 * 42.58300 * 8 7 5 30 30 H 1.08998 * 109.57371 * 162.83368 * 8 7 5 31 31 H 1.08998 * 108.78736 * 212.70549 * 9 8 7 32 32 H 1.08998 * 108.78545 * 330.92099 * 9 8 7 33 33 H 1.08994 * 108.72166 * 196.87980 * 10 9 8 34 34 H 1.08999 * 108.61796 * 78.91370 * 10 9 8 35 35 H 1.09001 * 109.46881 * 77.40120 * 12 11 10 36 36 H 1.08996 * 109.47229 * 197.41010 * 12 11 10 37 37 H 1.09008 * 109.46649 * 299.99670 * 13 12 11 38 38 H 1.08999 * 109.47251 * 59.99458 * 13 12 11 39 39 H 1.08992 * 109.47219 * 299.99814 * 14 13 12 40 40 H 1.09002 * 109.47140 * 60.00478 * 14 13 12 41 41 H 0.97001 * 119.99548 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.70029 * 335.68683 * 23 11 10 43 43 H 1.09007 * 109.70059 * 215.10398 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.7335 -0.1239 2.3942 7 6 1.6106 -2.0739 1.6690 8 6 1.8447 -2.7418 3.0426 9 6 3.2662 -3.2327 3.1119 10 6 4.2297 -2.1929 3.7148 11 7 3.9873 -0.8162 3.2303 12 6 5.0938 0.0755 3.6024 13 6 5.5171 -0.2115 5.0445 14 6 6.6700 0.7167 5.4319 15 6 7.0865 0.4344 6.8524 16 1 6.5794 -0.3302 7.4221 17 6 8.1143 1.1532 7.4252 18 7 8.7315 2.0847 6.7316 19 14 8.6311 0.8028 9.1858 20 1 7.7861 -0.2839 9.7427 21 1 10.0557 0.3843 9.2095 22 1 8.4619 2.0299 10.0047 23 6 3.7154 -0.7402 1.8152 24 1 -0.3634 0.5970 0.8364 25 1 -0.3634 0.4259 -0.9353 26 1 -0.3634 -1.0230 0.0987 27 1 2.0650 -2.6890 0.8924 28 1 0.5384 -2.0046 1.4854 29 1 1.6700 -2.0155 3.8364 30 1 1.1617 -3.5831 3.1607 31 1 3.2959 -4.1375 3.7190 32 1 3.6026 -3.4774 2.1044 33 1 5.2519 -2.4766 3.4644 34 1 4.1217 -2.2059 4.7993 35 1 5.9384 -0.0956 2.9350 36 1 4.7686 1.1124 3.5188 37 1 4.6724 -0.0405 5.7119 38 1 5.8422 -1.2485 5.1282 39 1 7.5144 0.5454 4.7644 40 1 6.3452 1.7539 5.3482 41 1 9.4549 2.5900 7.1345 42 1 4.1494 -1.6036 1.3108 43 1 4.1420 0.1765 1.4078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444801185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -106.639423 kcal Electronic energy + Delta-G solvation = -21882.562780 eV Core-core repulsion = 18667.538017 eV Total energy + Delta-G solvation = -3215.024763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.37097 -38.02999 -37.02243 -36.88789 -35.22559 -33.53459 -32.98452 -30.38221 -28.92455 -27.01363 -26.19585 -24.35729 -22.17412 -21.88169 -20.37296 -19.72360 -18.57946 -18.02294 -17.23385 -16.99246 -16.76845 -16.59117 -16.22305 -15.93519 -15.13579 -14.93093 -14.71927 -14.31832 -14.19074 -13.94218 -13.78193 -13.72488 -13.46611 -13.11495 -13.04541 -12.98244 -12.92201 -12.72436 -12.50921 -12.23636 -12.11977 -11.94932 -11.74402 -11.61794 -11.57275 -11.46791 -11.20814 -11.13358 -10.83039 -10.57090 -9.22378 -8.21114 -6.32563 -0.91750 1.39382 1.39832 1.53323 1.86448 2.39887 2.61407 3.00775 3.12126 3.12471 3.55078 3.66560 3.90263 4.07503 4.13312 4.16848 4.20291 4.22133 4.27180 4.33785 4.48258 4.59704 4.65496 4.73221 4.77069 4.83800 4.95798 5.02087 5.07902 5.15217 5.17365 5.23258 5.25736 5.37597 5.50091 5.57027 5.71364 5.83639 6.03360 6.20913 6.27284 6.84677 7.36911 8.91184 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027071 B = 0.003329 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.050714 B = 8407.868074 C = 9074.511912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.406 3.594 3 O -0.992 6.992 4 O -0.980 6.980 5 C -0.542 4.542 6 H 0.160 0.840 7 C -0.122 4.122 8 C -0.100 4.100 9 C -0.121 4.121 10 C 0.054 3.946 11 N -0.535 5.535 12 C 0.064 3.936 13 C -0.092 4.092 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.061 0.939 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.069 3.931 24 H 0.154 0.846 25 H 0.140 0.860 26 H 0.161 0.839 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.072 0.928 35 H 0.022 0.978 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.055 0.945 39 H -0.013 1.013 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.062 0.938 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.660 -10.871 -11.969 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.595 3.405 3 O -0.989 6.989 4 O -0.977 6.977 5 C -0.653 4.653 6 H 0.178 0.822 7 C -0.160 4.160 8 C -0.139 4.139 9 C -0.159 4.159 10 C -0.073 4.073 11 N -0.260 5.260 12 C -0.063 4.063 13 C -0.130 4.130 14 C -0.014 4.014 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.204 1.204 22 H -0.203 1.203 23 C -0.061 4.061 24 H 0.172 0.828 25 H 0.158 0.842 26 H 0.179 0.821 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.006 0.994 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.313 -10.283 -12.437 26.733 hybrid contribution 1.340 -0.025 0.957 1.647 sum -19.973 -10.308 -11.480 25.238 Atomic orbital electron populations 1.30080 1.20521 1.14329 1.13607 1.08095 0.80831 0.74159 0.77454 1.93546 1.81457 1.36818 1.87068 1.93523 1.81205 1.67281 1.55725 1.28977 1.03867 1.10385 1.22070 0.82226 1.20648 1.02674 0.92467 1.00219 1.21218 0.95369 1.00819 0.96449 1.21492 0.95735 0.97401 1.01282 1.22576 0.97338 0.86811 1.00546 1.60724 1.41661 1.09370 1.14211 1.22179 0.91023 0.96862 0.96280 1.21509 0.97829 0.99264 0.94412 1.18994 0.93063 0.94213 0.95173 1.21702 1.17280 1.19555 0.99308 0.92058 1.26029 0.96421 0.94780 1.02833 1.70117 1.24251 1.24199 1.38961 0.85364 0.78114 0.78406 0.78950 1.18385 1.20422 1.20331 1.21528 0.92741 1.01773 0.90083 0.82772 0.84164 0.82130 0.90388 0.86987 0.91181 0.89378 0.89985 0.92173 0.96090 0.90979 0.95950 0.91272 0.92374 0.92678 0.99444 0.99043 0.92785 0.91935 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.44 10.10 113.37 1.14 -2.30 16 2 S 2.41 41.18 4.75 -56.49 -0.27 40.91 16 3 O -0.99 -27.00 17.82 -127.37 -2.27 -29.27 16 4 O -0.98 -23.48 17.75 -127.37 -2.26 -25.74 16 5 C -0.54 -8.81 2.21 28.74 0.06 -8.74 16 6 H 0.16 2.19 8.08 -2.41 -0.02 2.17 16 7 C -0.12 -1.39 4.40 28.93 0.13 -1.26 16 8 C -0.10 -1.35 5.62 30.32 0.17 -1.18 16 9 C -0.12 -2.18 5.29 30.15 0.16 -2.02 16 10 C 0.05 1.40 4.16 86.46 0.36 1.76 16 11 N -0.54 -15.15 4.17 -895.99 -3.73 -18.88 16 12 C 0.06 2.30 4.94 86.30 0.43 2.73 16 13 C -0.09 -3.87 4.32 30.59 0.13 -3.74 16 14 C 0.02 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 18 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 19 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.07 1.70 4.75 87.12 0.41 2.11 16 24 H 0.15 0.25 8.14 -2.39 -0.02 0.24 16 25 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.16 -0.03 6.75 -2.39 -0.02 -0.04 16 27 H 0.08 0.95 7.36 -2.39 -0.02 0.93 16 28 H 0.11 0.34 6.17 -2.38 -0.01 0.33 16 29 H 0.07 1.13 7.79 -2.39 -0.02 1.11 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.06 6.67 -2.39 -0.02 1.05 16 33 H 0.02 0.60 7.77 -2.39 -0.02 0.58 16 34 H 0.07 1.98 6.99 -2.39 -0.02 1.96 16 35 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.05 2.23 6.42 -2.39 -0.02 2.22 16 39 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.06 1.49 6.80 -2.39 -0.02 1.47 16 43 H 0.06 1.78 7.17 -2.38 -0.02 1.77 16 Total: -1.00 -80.21 341.21 -1.41 -81.63 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.97 Total: 4.38 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 3.84 Total: -42.01 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -3.45 Total: -76.67 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -4.53 Total: -55.01 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 41.18 SS G_CDS: -0.27 Total: 40.91 kcal Total: -80.21 -1.41 -81.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444801185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.013 kcal (2) G-P(sol) polarization free energy of solvation -80.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds